Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03470 and IAI47_03475 are separated by 1 nucleotides IAI47_03475 and IAI47_03480 are separated by 1 nucleotides IAI47_03480 and IAI47_03485 are separated by 218 nucleotides
IAI47_03470: IAI47_03470 - cytochrome ubiquinol oxidase subunit I, at 725,082 to 726,494
_03470
IAI47_03475: IAI47_03475 - cytochrome d ubiquinol oxidase subunit II, at 726,496 to 727,500
_03475
IAI47_03480: IAI47_03480 - DUF2474 domain-containing protein, at 727,502 to 727,675
_03480
IAI47_03485: IAI47_03485 - helix-turn-helix domain-containing protein, at 727,894 to 728,763
_03485
Position (kb) 726
727
728 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 725.639 kb on + strand, within IAI47_03470 at 725.639 kb on + strand, within IAI47_03470 at 725.639 kb on + strand, within IAI47_03470 at 725.639 kb on + strand, within IAI47_03470 at 725.639 kb on + strand, within IAI47_03470 at 725.639 kb on + strand, within IAI47_03470 at 725.639 kb on + strand, within IAI47_03470 at 725.639 kb on + strand, within IAI47_03470 at 725.640 kb on - strand, within IAI47_03470 at 725.640 kb on - strand, within IAI47_03470 at 725.714 kb on + strand, within IAI47_03470 at 725.714 kb on + strand, within IAI47_03470 at 725.714 kb on + strand, within IAI47_03470 at 725.714 kb on + strand, within IAI47_03470 at 725.714 kb on + strand, within IAI47_03470 at 725.714 kb on + strand, within IAI47_03470 at 725.714 kb on + strand, within IAI47_03470 at 725.715 kb on - strand, within IAI47_03470 at 725.715 kb on - strand, within IAI47_03470 at 725.715 kb on - strand, within IAI47_03470 at 725.715 kb on - strand, within IAI47_03470 at 725.715 kb on - strand, within IAI47_03470 at 725.726 kb on + strand, within IAI47_03470 at 725.727 kb on - strand, within IAI47_03470 at 725.732 kb on + strand, within IAI47_03470 at 725.733 kb on - strand, within IAI47_03470 at 725.904 kb on - strand, within IAI47_03470 at 725.928 kb on - strand, within IAI47_03470 at 725.928 kb on - strand, within IAI47_03470 at 725.934 kb on + strand, within IAI47_03470 at 725.934 kb on + strand, within IAI47_03470 at 725.934 kb on + strand, within IAI47_03470 at 725.935 kb on - strand, within IAI47_03470 at 725.935 kb on - strand, within IAI47_03470 at 725.935 kb on - strand, within IAI47_03470 at 725.935 kb on - strand, within IAI47_03470 at 725.935 kb on - strand, within IAI47_03470 at 725.935 kb on - strand, within IAI47_03470 at 725.952 kb on + strand, within IAI47_03470 at 725.952 kb on + strand, within IAI47_03470 at 725.952 kb on + strand, within IAI47_03470 at 725.953 kb on - strand, within IAI47_03470 at 725.953 kb on - strand, within IAI47_03470 at 725.953 kb on - strand, within IAI47_03470 at 725.953 kb on - strand, within IAI47_03470 at 726.032 kb on + strand, within IAI47_03470 at 726.033 kb on - strand, within IAI47_03470 at 726.033 kb on - strand, within IAI47_03470 at 726.038 kb on + strand, within IAI47_03470 at 726.038 kb on + strand, within IAI47_03470 at 726.039 kb on - strand, within IAI47_03470 at 726.039 kb on - strand, within IAI47_03470 at 726.039 kb on - strand, within IAI47_03470 at 726.092 kb on + strand, within IAI47_03470 at 726.092 kb on + strand, within IAI47_03470 at 726.093 kb on - strand, within IAI47_03470 at 726.139 kb on - strand, within IAI47_03470 at 726.139 kb on - strand, within IAI47_03470 at 726.172 kb on + strand, within IAI47_03470 at 726.173 kb on - strand, within IAI47_03470 at 726.173 kb on - strand, within IAI47_03470 at 726.173 kb on - strand, within IAI47_03470 at 726.173 kb on - strand, within IAI47_03470 at 726.173 kb on - strand, within IAI47_03470 at 726.215 kb on + strand, within IAI47_03470 at 726.216 kb on - strand, within IAI47_03470 at 726.249 kb on + strand, within IAI47_03470 at 726.250 kb on - strand, within IAI47_03470 at 726.250 kb on - strand, within IAI47_03470 at 726.250 kb on - strand, within IAI47_03470 at 726.250 kb on - strand, within IAI47_03470 at 726.250 kb on - strand, within IAI47_03470 at 726.250 kb on - strand, within IAI47_03470 at 726.294 kb on - strand, within IAI47_03470 at 726.294 kb on - strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.299 kb on + strand, within IAI47_03470 at 726.300 kb on - strand, within IAI47_03470 at 726.300 kb on - strand, within IAI47_03470 at 726.300 kb on - strand at 726.300 kb on - strand, within IAI47_03470 at 726.300 kb on - strand, within IAI47_03470 at 726.300 kb on - strand, within IAI47_03470 at 726.300 kb on - strand, within IAI47_03470 at 726.300 kb on - strand, within IAI47_03470 at 726.300 kb on - strand, within IAI47_03470 at 726.300 kb on - strand, within IAI47_03470 at 726.323 kb on + strand, within IAI47_03470 at 726.323 kb on + strand, within IAI47_03470 at 726.324 kb on - strand, within IAI47_03470 at 726.324 kb on - strand, within IAI47_03470 at 726.324 kb on - strand, within IAI47_03470 at 726.333 kb on + strand, within IAI47_03470 at 726.333 kb on + strand, within IAI47_03470 at 726.333 kb on + strand, within IAI47_03470 at 726.333 kb on + strand, within IAI47_03470 at 726.333 kb on + strand, within IAI47_03470 at 726.334 kb on - strand, within IAI47_03470 at 726.334 kb on - strand, within IAI47_03470 at 726.358 kb on - strand at 726.363 kb on + strand at 726.363 kb on + strand at 726.363 kb on + strand at 726.364 kb on - strand at 726.364 kb on - strand at 726.364 kb on - strand at 726.364 kb on - strand at 726.364 kb on - strand at 726.364 kb on - strand at 726.364 kb on - strand at 726.364 kb on - strand at 726.364 kb on - strand at 726.364 kb on - strand at 726.364 kb on - strand at 726.364 kb on - strand at 726.364 kb on - strand at 726.380 kb on + strand at 726.380 kb on + strand at 726.380 kb on + strand at 726.380 kb on + strand at 726.410 kb on + strand at 726.410 kb on + strand at 726.410 kb on + strand at 726.410 kb on + strand at 726.410 kb on + strand at 726.411 kb on - strand at 726.411 kb on - strand at 726.411 kb on - strand at 726.476 kb on + strand at 726.477 kb on - strand at 726.492 kb on + strand at 726.492 kb on + strand at 726.492 kb on + strand at 726.492 kb on + strand at 726.493 kb on - strand at 726.493 kb on - strand at 726.493 kb on - strand at 726.505 kb on + strand at 726.506 kb on - strand at 726.513 kb on + strand at 726.513 kb on + strand at 726.550 kb on + strand at 726.550 kb on + strand at 726.550 kb on + strand at 726.550 kb on + strand at 726.550 kb on + strand at 726.550 kb on + strand at 726.550 kb on + strand at 726.550 kb on + strand at 726.550 kb on + strand at 726.550 kb on + strand at 726.550 kb on + strand at 726.550 kb on + strand at 726.550 kb on + strand at 726.550 kb on + strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.551 kb on - strand at 726.553 kb on - strand at 726.580 kb on - strand at 726.603 kb on + strand, within IAI47_03475 at 726.603 kb on + strand, within IAI47_03475 at 726.604 kb on - strand, within IAI47_03475 at 726.604 kb on - strand, within IAI47_03475 at 726.660 kb on + strand, within IAI47_03475 at 726.661 kb on - strand, within IAI47_03475 at 726.718 kb on + strand, within IAI47_03475 at 726.718 kb on + strand, within IAI47_03475 at 726.729 kb on + strand, within IAI47_03475 at 726.849 kb on + strand, within IAI47_03475 at 726.849 kb on + strand, within IAI47_03475 at 726.850 kb on - strand, within IAI47_03475 at 726.850 kb on - strand, within IAI47_03475 at 727.003 kb on + strand, within IAI47_03475 at 727.004 kb on - strand, within IAI47_03475 at 727.029 kb on + strand, within IAI47_03475 at 727.029 kb on + strand, within IAI47_03475 at 727.029 kb on + strand, within IAI47_03475 at 727.030 kb on - strand, within IAI47_03475 at 727.030 kb on - strand, within IAI47_03475 at 727.030 kb on - strand, within IAI47_03475 at 727.030 kb on - strand, within IAI47_03475 at 727.030 kb on - strand, within IAI47_03475 at 727.032 kb on + strand, within IAI47_03475 at 727.032 kb on + strand, within IAI47_03475 at 727.032 kb on + strand, within IAI47_03475 at 727.032 kb on + strand, within IAI47_03475 at 727.032 kb on + strand, within IAI47_03475 at 727.032 kb on + strand, within IAI47_03475 at 727.033 kb on - strand, within IAI47_03475 at 727.059 kb on + strand, within IAI47_03475 at 727.059 kb on + strand, within IAI47_03475 at 727.059 kb on + strand, within IAI47_03475 at 727.059 kb on + strand, within IAI47_03475 at 727.059 kb on + strand, within IAI47_03475 at 727.059 kb on + strand, within IAI47_03475 at 727.060 kb on - strand, within IAI47_03475 at 727.060 kb on - strand, within IAI47_03475 at 727.101 kb on - strand, within IAI47_03475 at 727.101 kb on - strand, within IAI47_03475 at 727.101 kb on - strand, within IAI47_03475 at 727.107 kb on + strand, within IAI47_03475 at 727.108 kb on - strand, within IAI47_03475 at 727.108 kb on - strand, within IAI47_03475 at 727.108 kb on - strand, within IAI47_03475 at 727.113 kb on + strand, within IAI47_03475 at 727.113 kb on + strand, within IAI47_03475 at 727.137 kb on + strand, within IAI47_03475 at 727.137 kb on + strand, within IAI47_03475 at 727.138 kb on - strand, within IAI47_03475 at 727.138 kb on - strand, within IAI47_03475 at 727.245 kb on + strand, within IAI47_03475 at 727.245 kb on + strand, within IAI47_03475 at 727.246 kb on - strand, within IAI47_03475 at 727.246 kb on - strand, within IAI47_03475 at 727.262 kb on - strand, within IAI47_03475 at 727.262 kb on - strand, within IAI47_03475 at 727.262 kb on - strand, within IAI47_03475 at 727.262 kb on - strand, within IAI47_03475 at 727.262 kb on - strand, within IAI47_03475 at 727.338 kb on + strand, within IAI47_03475 at 727.338 kb on + strand, within IAI47_03475 at 727.352 kb on + strand, within IAI47_03475 at 727.395 kb on + strand, within IAI47_03475 at 727.396 kb on - strand, within IAI47_03475 at 727.396 kb on - strand, within IAI47_03475 at 727.408 kb on - strand at 727.420 kb on - strand at 727.438 kb on + strand at 727.438 kb on + strand at 727.439 kb on - strand at 727.453 kb on + strand at 727.454 kb on - strand at 727.454 kb on - strand at 727.454 kb on - strand at 727.454 kb on - strand at 727.456 kb on + strand at 727.456 kb on + strand at 727.456 kb on + strand at 727.456 kb on + strand at 727.456 kb on + strand at 727.456 kb on + strand at 727.456 kb on + strand at 727.457 kb on - strand at 727.457 kb on - strand at 727.457 kb on - strand at 727.457 kb on - strand at 727.457 kb on - strand at 727.492 kb on + strand at 727.493 kb on - strand at 727.493 kb on - strand at 727.493 kb on - strand at 727.493 kb on - strand at 727.493 kb on - strand at 727.498 kb on - strand at 727.501 kb on + strand at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.588 kb on + strand, within IAI47_03480 at 727.589 kb on - strand, within IAI47_03480 at 727.589 kb on - strand, within IAI47_03480 at 727.589 kb on - strand, within IAI47_03480 at 727.589 kb on - strand, within IAI47_03480 at 727.592 kb on + strand, within IAI47_03480 at 727.592 kb on + strand, within IAI47_03480 at 727.592 kb on + strand, within IAI47_03480 at 727.593 kb on - strand, within IAI47_03480 at 727.661 kb on - strand at 727.666 kb on + strand at 727.667 kb on - strand at 727.667 kb on - strand at 727.667 kb on - strand at 727.673 kb on + strand at 727.673 kb on + strand at 727.673 kb on + strand at 727.673 kb on + strand at 727.673 kb on + strand at 727.674 kb on - strand at 727.674 kb on - strand at 727.674 kb on - strand at 727.674 kb on - strand at 727.674 kb on - strand at 727.674 kb on - strand at 727.754 kb on + strand at 727.761 kb on + strand at 727.810 kb on - strand at 727.810 kb on - strand at 727.820 kb on + strand at 727.821 kb on - strand at 727.821 kb on - strand at 727.835 kb on + strand at 727.835 kb on + strand at 727.835 kb on + strand at 727.836 kb on - strand at 727.842 kb on + strand at 727.852 kb on + strand at 727.856 kb on + strand at 727.856 kb on + strand at 727.871 kb on - strand at 727.883 kb on - strand at 727.883 kb on - strand at 727.911 kb on + strand at 727.969 kb on - strand at 727.969 kb on - strand at 727.969 kb on - strand at 727.971 kb on - strand at 727.975 kb on - strand at 727.975 kb on - strand at 728.002 kb on + strand, within IAI47_03485 at 728.062 kb on + strand, within IAI47_03485 at 728.062 kb on + strand, within IAI47_03485 at 728.062 kb on + strand, within IAI47_03485 at 728.062 kb on + strand, within IAI47_03485 at 728.063 kb on - strand, within IAI47_03485 at 728.063 kb on - strand, within IAI47_03485 at 728.063 kb on - strand, within IAI47_03485 at 728.129 kb on - strand, within IAI47_03485 at 728.154 kb on + strand, within IAI47_03485 at 728.154 kb on + strand, within IAI47_03485 at 728.220 kb on + strand, within IAI47_03485 at 728.221 kb on - strand, within IAI47_03485 at 728.221 kb on - strand, within IAI47_03485 at 728.346 kb on + strand, within IAI47_03485 at 728.346 kb on + strand, within IAI47_03485 at 728.347 kb on - strand, within IAI47_03485 at 728.347 kb on - strand, within IAI47_03485 at 728.359 kb on + strand, within IAI47_03485 at 728.359 kb on + strand, within IAI47_03485 at 728.359 kb on + strand, within IAI47_03485 at 728.360 kb on - strand, within IAI47_03485 at 728.360 kb on - strand, within IAI47_03485 at 728.444 kb on + strand, within IAI47_03485 at 728.445 kb on - strand, within IAI47_03485 at 728.445 kb on - strand, within IAI47_03485 at 728.456 kb on - strand, within IAI47_03485
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 725,639 + IAI47_03470 0.39 -1.8 725,639 + IAI47_03470 0.39 -0.5 725,639 + IAI47_03470 0.39 -1.1 725,639 + IAI47_03470 0.39 -1.0 725,639 + IAI47_03470 0.39 +0.3 725,639 + IAI47_03470 0.39 -2.0 725,639 + IAI47_03470 0.39 -2.2 725,639 + IAI47_03470 0.39 -1.5 725,640 - IAI47_03470 0.39 -1.7 725,640 - IAI47_03470 0.39 -0.2 725,714 + IAI47_03470 0.45 -2.3 725,714 + IAI47_03470 0.45 -1.3 725,714 + IAI47_03470 0.45 -0.7 725,714 + IAI47_03470 0.45 -0.4 725,714 + IAI47_03470 0.45 +0.0 725,714 + IAI47_03470 0.45 -1.5 725,714 + IAI47_03470 0.45 -0.6 725,715 - IAI47_03470 0.45 -0.7 725,715 - IAI47_03470 0.45 -1.5 725,715 - IAI47_03470 0.45 -0.5 725,715 - IAI47_03470 0.45 -2.3 725,715 - IAI47_03470 0.45 -0.4 725,726 + IAI47_03470 0.46 -1.5 725,727 - IAI47_03470 0.46 -1.5 725,732 + IAI47_03470 0.46 +0.3 725,733 - IAI47_03470 0.46 +1.9 725,904 - IAI47_03470 0.58 -0.5 725,928 - IAI47_03470 0.60 +0.1 725,928 - IAI47_03470 0.60 +0.5 725,934 + IAI47_03470 0.60 +1.7 725,934 + IAI47_03470 0.60 +0.0 725,934 + IAI47_03470 0.60 -0.1 725,935 - IAI47_03470 0.60 -0.1 725,935 - IAI47_03470 0.60 +0.9 725,935 - IAI47_03470 0.60 -0.4 725,935 - IAI47_03470 0.60 -1.7 725,935 - IAI47_03470 0.60 -1.7 725,935 - IAI47_03470 0.60 -0.9 725,952 + IAI47_03470 0.62 -1.4 725,952 + IAI47_03470 0.62 -1.7 725,952 + IAI47_03470 0.62 +2.2 725,953 - IAI47_03470 0.62 +0.3 725,953 - IAI47_03470 0.62 +0.4 725,953 - IAI47_03470 0.62 -0.8 725,953 - IAI47_03470 0.62 -1.2 726,032 + IAI47_03470 0.67 +0.0 726,033 - IAI47_03470 0.67 -1.8 726,033 - IAI47_03470 0.67 -0.0 726,038 + IAI47_03470 0.68 -0.5 726,038 + IAI47_03470 0.68 +0.4 726,039 - IAI47_03470 0.68 -0.9 726,039 - IAI47_03470 0.68 +0.6 726,039 - IAI47_03470 0.68 +0.0 726,092 + IAI47_03470 0.71 -0.2 726,092 + IAI47_03470 0.71 -0.6 726,093 - IAI47_03470 0.72 +0.8 726,139 - IAI47_03470 0.75 +0.3 726,139 - IAI47_03470 0.75 -0.8 726,172 + IAI47_03470 0.77 +0.9 726,173 - IAI47_03470 0.77 -1.3 726,173 - IAI47_03470 0.77 +0.8 726,173 - IAI47_03470 0.77 +2.0 726,173 - IAI47_03470 0.77 -1.5 726,173 - IAI47_03470 0.77 +0.2 726,215 + IAI47_03470 0.80 -0.1 726,216 - IAI47_03470 0.80 -0.8 726,249 + IAI47_03470 0.83 -0.7 726,250 - IAI47_03470 0.83 -0.8 726,250 - IAI47_03470 0.83 +1.0 726,250 - IAI47_03470 0.83 -0.4 726,250 - IAI47_03470 0.83 -1.3 726,250 - IAI47_03470 0.83 -0.5 726,250 - IAI47_03470 0.83 -1.4 726,294 - IAI47_03470 0.86 +1.6 726,294 - IAI47_03470 0.86 -0.0 726,299 + IAI47_03470 0.86 -0.8 726,299 + IAI47_03470 0.86 -1.2 726,299 + IAI47_03470 0.86 -0.5 726,299 + IAI47_03470 0.86 -2.9 726,299 + IAI47_03470 0.86 -2.0 726,299 + IAI47_03470 0.86 -1.5 726,299 + IAI47_03470 0.86 -2.6 726,299 + IAI47_03470 0.86 +0.2 726,299 + IAI47_03470 0.86 -2.4 726,299 + IAI47_03470 0.86 -1.4 726,299 + IAI47_03470 0.86 +1.2 726,299 + IAI47_03470 0.86 +0.3 726,299 + IAI47_03470 0.86 -1.6 726,299 + IAI47_03470 0.86 -0.4 726,299 + IAI47_03470 0.86 -0.0 726,300 - IAI47_03470 0.86 -0.7 726,300 - IAI47_03470 0.86 -1.5 726,300 - +0.3 726,300 - IAI47_03470 0.86 -0.3 726,300 - IAI47_03470 0.86 +0.7 726,300 - IAI47_03470 0.86 -0.2 726,300 - IAI47_03470 0.86 -2.0 726,300 - IAI47_03470 0.86 +0.3 726,300 - IAI47_03470 0.86 -2.5 726,300 - IAI47_03470 0.86 -2.1 726,323 + IAI47_03470 0.88 -1.3 726,323 + IAI47_03470 0.88 +0.4 726,324 - IAI47_03470 0.88 -0.0 726,324 - IAI47_03470 0.88 +1.8 726,324 - IAI47_03470 0.88 -2.0 726,333 + IAI47_03470 0.89 -2.3 726,333 + IAI47_03470 0.89 -1.2 726,333 + IAI47_03470 0.89 -1.9 726,333 + IAI47_03470 0.89 -0.7 726,333 + IAI47_03470 0.89 -0.4 726,334 - IAI47_03470 0.89 -1.7 726,334 - IAI47_03470 0.89 +0.6 726,358 - -0.5 726,363 + -1.5 726,363 + -0.8 726,363 + -0.2 726,364 - -2.3 726,364 - -1.4 726,364 - +0.7 726,364 - +2.4 726,364 - +0.0 726,364 - +0.2 726,364 - -0.7 726,364 - -0.3 726,364 - -0.0 726,364 - +1.3 726,364 - +0.6 726,364 - -2.0 726,364 - -2.3 726,380 + +1.6 726,380 + +0.1 726,380 + +0.7 726,380 + -0.4 726,410 + -2.1 726,410 + -0.7 726,410 + +0.4 726,410 + +1.8 726,410 + -2.6 726,411 - 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IAI47_03485 0.54 +1.1 728,444 + IAI47_03485 0.63 +1.4 728,445 - IAI47_03485 0.63 -0.9 728,445 - IAI47_03485 0.63 +1.0 728,456 - IAI47_03485 0.65 +0.8
Or see this region's nucleotide sequence