Strain Fitness in Pantoea sp. MT58 around IAI47_01655

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01650 and IAI47_01655 are separated by 140 nucleotidesIAI47_01655 and IAI47_01660 are separated by 2 nucleotides IAI47_01650: IAI47_01650 - gluconate operon transcriptional repressor GntR, at 358,379 to 359,374 _01650 IAI47_01655: IAI47_01655 - gluconokinase, at 359,515 to 360,051 _01655 IAI47_01660: IAI47_01660 - gluconate transporter, at 360,054 to 361,394 _01660 Position (kb) 359 360 361Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 358.523 kb on + strand, within IAI47_01650at 358.523 kb on + strand, within IAI47_01650at 358.523 kb on + strand, within IAI47_01650at 358.523 kb on + strand, within IAI47_01650at 358.523 kb on + strand, within IAI47_01650at 358.523 kb on + strand, within IAI47_01650at 358.523 kb on + strand, within IAI47_01650at 358.523 kb on + strand, within IAI47_01650at 358.523 kb on + strand, within IAI47_01650at 358.524 kb on - strand, within IAI47_01650at 358.524 kb on - strand, within IAI47_01650at 358.524 kb on - strand, within IAI47_01650at 358.524 kb on - strand, within IAI47_01650at 358.524 kb on - strand, within IAI47_01650at 358.525 kb on + strand, within IAI47_01650at 358.525 kb on + strand, within IAI47_01650at 358.525 kb on + strand, within IAI47_01650at 358.525 kb on + strand, within IAI47_01650at 358.526 kb on - strand, within IAI47_01650at 358.555 kb on + strand, within IAI47_01650at 358.556 kb on - strand, within IAI47_01650at 358.556 kb on - strand, within IAI47_01650at 358.620 kb on + strand, within IAI47_01650at 358.620 kb on + strand, within IAI47_01650at 358.621 kb on - strand, within IAI47_01650at 358.658 kb on + strand, within IAI47_01650at 358.658 kb on + strand, within IAI47_01650at 358.658 kb on + strand, within IAI47_01650at 358.659 kb on - strand, within IAI47_01650at 358.659 kb on - strand, within IAI47_01650at 358.685 kb on + strand, within IAI47_01650at 358.685 kb on + strand, within IAI47_01650at 358.686 kb on - strand, within IAI47_01650at 358.686 kb on - strand, within IAI47_01650at 358.762 kb on + strand, within IAI47_01650at 358.762 kb on + strand, within IAI47_01650at 358.762 kb on + strand, within IAI47_01650at 358.762 kb on + strand, within IAI47_01650at 358.762 kb on + strand, within IAI47_01650at 358.762 kb on + strand, within IAI47_01650at 358.762 kb on + strand, within IAI47_01650at 358.763 kb on - strand, within IAI47_01650at 358.763 kb on - strand, within IAI47_01650at 358.768 kb on + strand, within IAI47_01650at 358.769 kb on - strand, within IAI47_01650at 358.815 kb on + strand, within IAI47_01650at 358.815 kb on + strand, within IAI47_01650at 358.815 kb on + strand, within IAI47_01650at 358.815 kb on + strand, within IAI47_01650at 358.815 kb on + strand, within IAI47_01650at 358.816 kb on - strand, within IAI47_01650at 358.816 kb on - strand, within IAI47_01650at 358.816 kb on - strand, within IAI47_01650at 358.816 kb on - strand, within IAI47_01650at 358.867 kb on + strand, within IAI47_01650at 358.868 kb on - strand, within IAI47_01650at 358.868 kb on - strand, within IAI47_01650at 358.901 kb on - strand, within IAI47_01650at 358.910 kb on - strand, within IAI47_01650at 358.931 kb on + strand, within IAI47_01650at 358.931 kb on + strand, within IAI47_01650at 358.932 kb on - strand, within IAI47_01650at 358.932 kb on - strand, within IAI47_01650at 358.932 kb on - strand, within IAI47_01650at 358.957 kb on + strand, within IAI47_01650at 358.958 kb on - strand, within IAI47_01650at 358.958 kb on - strand, within IAI47_01650at 358.958 kb on - strand, within IAI47_01650at 358.958 kb on - strand, within IAI47_01650at 358.958 kb on - strand, within IAI47_01650at 358.958 kb on - strand, within IAI47_01650at 358.958 kb on - strand, within IAI47_01650at 358.979 kb on + strand, within IAI47_01650at 358.980 kb on - strand, within IAI47_01650at 359.088 kb on - strand, within IAI47_01650at 359.088 kb on - strand, within IAI47_01650at 359.113 kb on + strand, within IAI47_01650at 359.113 kb on + strand, within IAI47_01650at 359.114 kb on - strand, within IAI47_01650at 359.114 kb on - strand, within IAI47_01650at 359.166 kb on + strand, within IAI47_01650at 359.166 kb on + strand, within IAI47_01650at 359.166 kb on + strand, within IAI47_01650at 359.166 kb on + strand, within IAI47_01650at 359.167 kb on - strand, within IAI47_01650at 359.167 kb on - strand, within IAI47_01650at 359.167 kb on - strand, within IAI47_01650at 359.167 kb on - strand, within IAI47_01650at 359.167 kb on - strand, within IAI47_01650at 359.293 kb on - strandat 359.323 kb on + strandat 359.324 kb on - strandat 359.387 kb on + strandat 359.388 kb on - strandat 359.711 kb on + strand, within IAI47_01655at 359.763 kb on + strand, within IAI47_01655at 359.763 kb on + strand, within IAI47_01655at 359.764 kb on - strand, within IAI47_01655at 359.764 kb on - strand, within IAI47_01655at 359.764 kb on - strand, within IAI47_01655at 359.764 kb on - strand, within IAI47_01655at 359.764 kb on - strand, within IAI47_01655at 359.764 kb on - strand, within IAI47_01655at 359.764 kb on - strand, within IAI47_01655at 359.764 kb on - strand, within IAI47_01655at 359.794 kb on + strand, within IAI47_01655at 359.839 kb on + strand, within IAI47_01655at 359.839 kb on + strand, within IAI47_01655at 359.840 kb on - strand, within IAI47_01655at 359.863 kb on - strand, within IAI47_01655at 359.863 kb on - strand, within IAI47_01655at 359.886 kb on + strand, within IAI47_01655at 359.887 kb on - strand, within IAI47_01655at 359.887 kb on - strand, within IAI47_01655at 359.919 kb on - strand, within IAI47_01655at 359.966 kb on + strand, within IAI47_01655at 359.966 kb on + strand, within IAI47_01655at 359.966 kb on + strand, within IAI47_01655at 359.967 kb on - strand, within IAI47_01655at 359.967 kb on - strand, within IAI47_01655at 359.967 kb on - strand, within IAI47_01655at 359.967 kb on - strand, within IAI47_01655at 359.967 kb on - strand, within IAI47_01655at 360.012 kb on + strandat 360.012 kb on + strandat 360.012 kb on + strandat 360.013 kb on - strandat 360.013 kb on - strandat 360.036 kb on + strandat 360.036 kb on + strandat 360.037 kb on - strandat 360.037 kb on - strandat 360.050 kb on - strandat 360.050 kb on - strandat 360.059 kb on + strandat 360.060 kb on - strandat 360.154 kb on + strandat 360.154 kb on + strandat 360.154 kb on + strandat 360.154 kb on + strandat 360.155 kb on - strandat 360.155 kb on - strandat 360.155 kb on - strandat 360.155 kb on - strandat 360.155 kb on - strandat 360.155 kb on - strandat 360.320 kb on + strand, within IAI47_01660at 360.320 kb on + strand, within IAI47_01660at 360.321 kb on - strand, within IAI47_01660at 360.321 kb on - strand, within IAI47_01660at 360.360 kb on + strand, within IAI47_01660at 360.360 kb on + strand, within IAI47_01660at 360.360 kb on + strand, within IAI47_01660at 360.361 kb on - strand, within IAI47_01660at 360.361 kb on - strand, within IAI47_01660at 360.822 kb on + strand, within IAI47_01660at 360.823 kb on - strand, within IAI47_01660at 360.823 kb on - strand, within IAI47_01660at 360.823 kb on - strand, within IAI47_01660at 360.823 kb on - strand, within IAI47_01660at 360.823 kb on - strand, within IAI47_01660at 360.823 kb on - strand, within IAI47_01660at 360.888 kb on + strand, within IAI47_01660at 360.888 kb on + strand, within IAI47_01660at 360.889 kb on - strand, within IAI47_01660at 360.889 kb on - strand, within IAI47_01660at 360.900 kb on + strand, within IAI47_01660at 360.901 kb on - strand, within IAI47_01660at 360.917 kb on + strand, within IAI47_01660at 360.968 kb on + strand, within IAI47_01660at 360.968 kb on + strand, within IAI47_01660at 361.009 kb on + strand, within IAI47_01660at 361.009 kb on + strand, within IAI47_01660at 361.010 kb on - strand, within IAI47_01660

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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358,523 + IAI47_01650 0.14 +0.4
358,523 + IAI47_01650 0.14 -0.8
358,523 + IAI47_01650 0.14 -2.5
358,523 + IAI47_01650 0.14 -0.1
358,523 + IAI47_01650 0.14 -0.6
358,523 + IAI47_01650 0.14 -2.2
358,523 + IAI47_01650 0.14 -1.1
358,523 + IAI47_01650 0.14 -1.9
358,523 + IAI47_01650 0.14 -1.2
358,524 - IAI47_01650 0.15 -1.1
358,524 - IAI47_01650 0.15 +0.5
358,524 - IAI47_01650 0.15 +0.4
358,524 - IAI47_01650 0.15 -2.7
358,524 - IAI47_01650 0.15 -2.2
358,525 + IAI47_01650 0.15 -3.4
358,525 + IAI47_01650 0.15 -1.6
358,525 + IAI47_01650 0.15 -4.0
358,525 + IAI47_01650 0.15 -1.1
358,526 - IAI47_01650 0.15 -0.8
358,555 + IAI47_01650 0.18 -3.0
358,556 - IAI47_01650 0.18 +0.4
358,556 - IAI47_01650 0.18 -3.0
358,620 + IAI47_01650 0.24 -1.8
358,620 + IAI47_01650 0.24 -1.0
358,621 - IAI47_01650 0.24 -2.4
358,658 + IAI47_01650 0.28 -2.2
358,658 + IAI47_01650 0.28 -1.1
358,658 + IAI47_01650 0.28 -1.2
358,659 - IAI47_01650 0.28 -2.3
358,659 - IAI47_01650 0.28 -1.0
358,685 + IAI47_01650 0.31 -2.9
358,685 + IAI47_01650 0.31 +0.0
358,686 - IAI47_01650 0.31 -1.9
358,686 - IAI47_01650 0.31 -2.6
358,762 + IAI47_01650 0.38 -1.4
358,762 + IAI47_01650 0.38 -1.2
358,762 + IAI47_01650 0.38 +1.1
358,762 + IAI47_01650 0.38 -1.7
358,762 + IAI47_01650 0.38 -2.0
358,762 + IAI47_01650 0.38 -2.2
358,762 + IAI47_01650 0.38 -2.7
358,763 - IAI47_01650 0.39 -1.1
358,763 - IAI47_01650 0.39 -2.0
358,768 + IAI47_01650 0.39 -0.6
358,769 - IAI47_01650 0.39 -1.0
358,815 + IAI47_01650 0.44 -1.4
358,815 + IAI47_01650 0.44 -2.7
358,815 + IAI47_01650 0.44 -0.8
358,815 + IAI47_01650 0.44 -3.3
358,815 + IAI47_01650 0.44 -0.3
358,816 - IAI47_01650 0.44 -1.7
358,816 - IAI47_01650 0.44 -1.7
358,816 - IAI47_01650 0.44 -1.4
358,816 - IAI47_01650 0.44 -0.4
358,867 + IAI47_01650 0.49 -1.2
358,868 - IAI47_01650 0.49 -1.8
358,868 - IAI47_01650 0.49 -2.1
358,901 - IAI47_01650 0.52 -2.1
358,910 - IAI47_01650 0.53 -1.3
358,931 + IAI47_01650 0.55 -2.7
358,931 + IAI47_01650 0.55 -0.3
358,932 - IAI47_01650 0.56 -0.3
358,932 - IAI47_01650 0.56 +0.3
358,932 - IAI47_01650 0.56 -0.8
358,957 + IAI47_01650 0.58 -1.2
358,958 - IAI47_01650 0.58 -2.2
358,958 - IAI47_01650 0.58 -3.3
358,958 - IAI47_01650 0.58 -0.5
358,958 - IAI47_01650 0.58 -1.6
358,958 - IAI47_01650 0.58 -1.1
358,958 - IAI47_01650 0.58 -0.9
358,958 - IAI47_01650 0.58 -2.4
358,979 + IAI47_01650 0.60 -1.4
358,980 - IAI47_01650 0.60 -3.5
359,088 - IAI47_01650 0.71 -3.0
359,088 - IAI47_01650 0.71 -2.6
359,113 + IAI47_01650 0.74 -1.3
359,113 + IAI47_01650 0.74 -0.7
359,114 - IAI47_01650 0.74 -2.2
359,114 - IAI47_01650 0.74 -1.8
359,166 + IAI47_01650 0.79 -2.0
359,166 + IAI47_01650 0.79 -3.0
359,166 + IAI47_01650 0.79 -1.6
359,166 + IAI47_01650 0.79 -1.6
359,167 - IAI47_01650 0.79 -0.6
359,167 - IAI47_01650 0.79 -1.9
359,167 - IAI47_01650 0.79 -1.5
359,167 - IAI47_01650 0.79 -2.0
359,167 - IAI47_01650 0.79 -3.9
359,293 - -2.3
359,323 + -0.7
359,324 - -0.9
359,387 + -1.5
359,388 - +0.9
359,711 + IAI47_01655 0.36 -0.1
359,763 + IAI47_01655 0.46 +1.5
359,763 + IAI47_01655 0.46 -1.2
359,764 - IAI47_01655 0.46 -1.0
359,764 - IAI47_01655 0.46 -0.4
359,764 - IAI47_01655 0.46 -0.2
359,764 - IAI47_01655 0.46 +1.0
359,764 - IAI47_01655 0.46 +0.4
359,764 - IAI47_01655 0.46 +0.8
359,764 - IAI47_01655 0.46 -1.3
359,764 - IAI47_01655 0.46 +0.3
359,794 + IAI47_01655 0.52 -1.3
359,839 + IAI47_01655 0.60 +0.4
359,839 + IAI47_01655 0.60 -3.2
359,840 - IAI47_01655 0.61 -1.1
359,863 - IAI47_01655 0.65 -0.9
359,863 - IAI47_01655 0.65 -0.7
359,886 + IAI47_01655 0.69 +0.2
359,887 - IAI47_01655 0.69 -1.4
359,887 - IAI47_01655 0.69 -0.0
359,919 - IAI47_01655 0.75 -0.3
359,966 + IAI47_01655 0.84 +2.9
359,966 + IAI47_01655 0.84 -0.9
359,966 + IAI47_01655 0.84 -0.3
359,967 - IAI47_01655 0.84 +1.3
359,967 - IAI47_01655 0.84 -0.5
359,967 - IAI47_01655 0.84 +0.2
359,967 - IAI47_01655 0.84 -0.2
359,967 - IAI47_01655 0.84 +0.7
360,012 + -0.6
360,012 + +0.7
360,012 + -0.0
360,013 - +0.8
360,013 - -1.2
360,036 + -0.2
360,036 + +1.0
360,037 - +1.2
360,037 - +1.6
360,050 - -2.4
360,050 - +2.2
360,059 + +0.1
360,060 - -0.3
360,154 + +0.7
360,154 + +1.1
360,154 + +2.1
360,154 + +2.9
360,155 - -1.4
360,155 - +0.9
360,155 - -1.0
360,155 - +1.0
360,155 - -0.0
360,155 - -0.9
360,320 + IAI47_01660 0.20 -1.5
360,320 + IAI47_01660 0.20 +0.8
360,321 - IAI47_01660 0.20 +1.7
360,321 - IAI47_01660 0.20 +0.8
360,360 + IAI47_01660 0.23 -0.1
360,360 + IAI47_01660 0.23 +2.0
360,360 + IAI47_01660 0.23 +1.1
360,361 - IAI47_01660 0.23 -0.1
360,361 - IAI47_01660 0.23 -2.3
360,822 + IAI47_01660 0.57 +0.5
360,823 - IAI47_01660 0.57 +0.1
360,823 - IAI47_01660 0.57 -0.2
360,823 - IAI47_01660 0.57 -0.8
360,823 - IAI47_01660 0.57 +0.0
360,823 - IAI47_01660 0.57 +1.5
360,823 - IAI47_01660 0.57 +2.4
360,888 + IAI47_01660 0.62 +1.5
360,888 + IAI47_01660 0.62 +1.9
360,889 - IAI47_01660 0.62 +0.6
360,889 - IAI47_01660 0.62 +0.2
360,900 + IAI47_01660 0.63 -0.8
360,901 - IAI47_01660 0.63 +1.1
360,917 + IAI47_01660 0.64 -0.9
360,968 + IAI47_01660 0.68 +0.9
360,968 + IAI47_01660 0.68 +0.8
361,009 + IAI47_01660 0.71 -1.6
361,009 + IAI47_01660 0.71 +1.7
361,010 - IAI47_01660 0.71 -1.9

Or see this region's nucleotide sequence