Strain Fitness in Pantoea sp. MT58 around IAI47_17335

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,670,763	+		IAI47_17325	0.55	+0.6
3,670,763	+		IAI47_17325	0.55	+0.9
3,670,763	+		IAI47_17325	0.55	+0.4
3,670,763	+		IAI47_17325	0.55	-0.3
3,670,764	-		IAI47_17325	0.55	+0.4
3,670,764	-		IAI47_17325	0.55	-0.8
3,670,764	-		IAI47_17325	0.55	-0.3
3,670,840	+		IAI47_17325	0.61	+0.7
3,670,915	+		IAI47_17325	0.67	-0.2
3,670,916	-		IAI47_17325	0.67	-0.7
3,670,944	+		IAI47_17325	0.69	-1.0
3,670,945	-		IAI47_17325	0.69	-0.2
3,670,969	+		IAI47_17325	0.71	-0.7
3,670,969	+		IAI47_17325	0.71	-0.5
3,670,970	-		IAI47_17325	0.71	+0.2
3,670,970	-		IAI47_17325	0.71	+0.2
3,670,970	-		IAI47_17325	0.71	-0.3
3,670,970	-		IAI47_17325	0.71	-1.1
3,670,970	-		IAI47_17325	0.71	-1.1
3,670,977	+		IAI47_17325	0.72	+0.2
3,670,978	-		IAI47_17325	0.72	-1.0
3,670,978	-		IAI47_17325	0.72	+0.0
3,671,017	+		IAI47_17325	0.75	-0.7
3,671,017	+		IAI47_17325	0.75	-0.7
3,671,018	-		IAI47_17325	0.75	-0.2
3,671,018	-		IAI47_17325	0.75	-0.4
3,671,023	-		IAI47_17325	0.75	-0.8
3,671,078	+		IAI47_17325	0.79	-0.7
3,671,078	+		IAI47_17325	0.79	-0.2
3,671,079	-		IAI47_17325	0.79	+0.2
3,671,195	+		IAI47_17325	0.88	+0.1
3,671,195	+		IAI47_17325	0.88	-1.9
3,671,263	+				+0.3
3,671,275	+				+0.7
3,671,275	+				+0.7
3,671,276	-				-0.4
3,671,289	+				+1.0
3,671,289	+				+0.9
3,671,290	-				-0.7
3,671,290	-				+0.2
3,671,343	+				+0.6
3,671,343	+				-1.0
3,671,343	+				+0.6
3,671,343	+				+0.0
3,671,343	+				+1.5
3,671,344	-				+1.1
3,671,345	+				+0.3
3,671,346	-				-1.2
3,671,346	-				-0.3
3,671,362	+				-1.0
3,671,363	-				-2.4
3,671,378	+				-1.5
3,671,379	-				+0.7
3,671,379	-				+0.0
3,671,379	-				-0.5
3,671,396	-				-0.2
3,671,396	-				+1.0
3,671,535	+		IAI47_17330	0.39	-2.0
3,671,535	+		IAI47_17330	0.39	+1.4
3,671,536	-		IAI47_17330	0.39	+0.7
3,671,536	-		IAI47_17330	0.39	-0.4
3,671,536	-		IAI47_17330	0.39	-1.2
3,671,537	+		IAI47_17330	0.40	-0.1
3,671,628	-		IAI47_17330	0.69	-0.6
3,671,643	+		IAI47_17330	0.73	-0.6
3,671,643	+		IAI47_17330	0.73	+2.1
3,671,643	+		IAI47_17330	0.73	+1.1
3,671,643	+		IAI47_17330	0.73	-0.7
3,671,643	+		IAI47_17330	0.73	+0.7
3,671,643	+		IAI47_17330	0.73	+1.0
3,671,644	-		IAI47_17330	0.74	+1.8
3,671,644	-		IAI47_17330	0.74	-0.8
3,671,644	-		IAI47_17330	0.74	-0.9
3,671,644	-		IAI47_17330	0.74	+1.0
3,671,644	-		IAI47_17330	0.74	-0.2
3,671,644	-		IAI47_17330	0.74	+0.4
3,671,684	-		IAI47_17330	0.86	+0.8
3,671,688	-		IAI47_17330	0.88	+1.0
3,671,688	-		IAI47_17330	0.88	-0.2
3,671,688	-		IAI47_17330	0.88	-0.8
3,671,694	+		IAI47_17330	0.90	+0.4
3,671,694	+		IAI47_17330	0.90	-1.0
3,671,694	+		IAI47_17330	0.90	-0.5
3,671,694	+		IAI47_17330	0.90	-0.3
3,671,694	+		IAI47_17330	0.90	+0.6
3,671,694	+		IAI47_17330	0.90	+1.1
3,671,694	+		IAI47_17330	0.90	+0.9
3,671,694	+		IAI47_17330	0.90	-0.6
3,671,694	+		IAI47_17330	0.90	-1.6
3,671,694	+		IAI47_17330	0.90	-0.5
3,671,695	-				+1.5
3,671,695	-				+1.9
3,671,695	-				-0.0
3,671,695	-				+0.1
3,671,695	-				+1.4
3,671,695	-				+0.8
3,671,695	-				-0.3
3,671,695	-				-1.0
3,671,695	-				-1.7
3,671,724	+				-0.5
3,671,724	+				+0.2
3,671,725	-				-0.7
3,671,728	+				-2.3
3,671,728	+				-0.9
3,671,729	-				+0.7
3,671,729	-				+0.3
3,671,749	+				+0.9
3,671,750	-				-0.5
3,671,750	-				+1.6
3,671,750	-				+0.3
3,671,750	-				-2.0
3,671,782	+				+0.5
3,671,824	+				-0.4
3,671,857	+				-1.1
3,671,857	+				-0.0
3,671,858	-				-0.4
3,671,858	-				+0.2
3,671,886	-		IAI47_17335	0.11	-1.2
3,671,888	+		IAI47_17335	0.11	-1.1
3,671,888	+		IAI47_17335	0.11	-0.6
3,671,888	+		IAI47_17335	0.11	+1.7
3,671,888	+		IAI47_17335	0.11	+0.6
3,671,888	+		IAI47_17335	0.11	-0.1
3,671,888	+		IAI47_17335	0.11	-2.4
3,671,888	+		IAI47_17335	0.11	+0.3
3,671,888	+		IAI47_17335	0.11	+2.1
3,671,888	+		IAI47_17335	0.11	-0.4
3,671,888	+		IAI47_17335	0.11	-0.9
3,671,888	+		IAI47_17335	0.11	+1.8
3,671,889	-		IAI47_17335	0.11	+1.0
3,671,889	-		IAI47_17335	0.11	+3.3
3,671,889	-		IAI47_17335	0.11	-1.4
3,671,889	-		IAI47_17335	0.11	+1.1
3,671,889	-		IAI47_17335	0.11	-0.5
3,671,889	-		IAI47_17335	0.11	+0.3
3,671,889	-		IAI47_17335	0.11	-0.1
3,671,889	-		IAI47_17335	0.11	-0.5
3,671,889	-		IAI47_17335	0.11	+0.6
3,671,889	-		IAI47_17335	0.11	+1.2
3,671,889	-		IAI47_17335	0.11	+2.3
3,671,889	-		IAI47_17335	0.11	-0.2
3,671,999	+		IAI47_17335	0.17	+1.5
3,671,999	+		IAI47_17335	0.17	+0.9
3,672,027	+		IAI47_17335	0.19	+1.6
3,672,027	+		IAI47_17335	0.19	-2.0
3,672,028	-		IAI47_17335	0.19	+2.5
3,672,068	+		IAI47_17335	0.22	-1.9
3,672,068	+		IAI47_17335	0.22	-1.3
3,672,068	+		IAI47_17335	0.22	-1.3
3,672,068	+		IAI47_17335	0.22	+0.3
3,672,068	+		IAI47_17335	0.22	+0.5
3,672,068	+		IAI47_17335	0.22	-0.2
3,672,068	+		IAI47_17335	0.22	+0.3
3,672,068	+		IAI47_17335	0.22	-2.3
3,672,068	+		IAI47_17335	0.22	-1.0
3,672,068	+		IAI47_17335	0.22	-0.4
3,672,068	+		IAI47_17335	0.22	+0.5
3,672,068	+		IAI47_17335	0.22	+0.3
3,672,069	-		IAI47_17335	0.22	+0.6
3,672,069	-		IAI47_17335	0.22	-2.0
3,672,069	-		IAI47_17335	0.22	+1.6
3,672,069	-		IAI47_17335	0.22	+0.9
3,672,069	-		IAI47_17335	0.22	+0.9
3,672,069	-		IAI47_17335	0.22	+0.5
3,672,135	+		IAI47_17335	0.25	-1.7
3,672,241	+		IAI47_17335	0.32	-0.0
3,672,241	+		IAI47_17335	0.32	+2.2
3,672,241	+		IAI47_17335	0.32	+0.6
3,672,241	+		IAI47_17335	0.32	+0.9
3,672,242	-		IAI47_17335	0.32	+0.7
3,672,242	-		IAI47_17335	0.32	+1.7
3,672,263	+		IAI47_17335	0.33	+0.9
3,672,263	+		IAI47_17335	0.33	-1.5
3,672,264	-		IAI47_17335	0.33	-1.1
3,672,264	-		IAI47_17335	0.33	-0.7
3,672,283	+		IAI47_17335	0.34	+0.6
3,672,283	+		IAI47_17335	0.34	+0.4
3,672,306	-		IAI47_17335	0.36	+0.5
3,672,321	+		IAI47_17335	0.36	-1.0
3,672,322	-		IAI47_17335	0.36	+1.0
3,672,322	-		IAI47_17335	0.36	+0.8
3,672,341	+		IAI47_17335	0.38	+1.9
3,672,341	+		IAI47_17335	0.38	+0.5
3,672,341	+		IAI47_17335	0.38	-0.3
3,672,341	+		IAI47_17335	0.38	+1.5
3,672,341	+		IAI47_17335	0.38	-0.3
3,672,341	+		IAI47_17335	0.38	-0.9
3,672,342	-		IAI47_17335	0.38	+0.1
3,672,342	-		IAI47_17335	0.38	-1.5
3,672,342	-		IAI47_17335	0.38	+0.3
3,672,365	+		IAI47_17335	0.39	+2.8
3,672,365	+		IAI47_17335	0.39	+0.3
3,672,365	+		IAI47_17335	0.39	-1.9
3,672,365	+		IAI47_17335	0.39	-2.1
3,672,365	+		IAI47_17335	0.39	-1.8
3,672,365	+		IAI47_17335	0.39	-0.0
3,672,366	-		IAI47_17335	0.39	-1.0
3,672,366	-		IAI47_17335	0.39	-1.5
3,672,366	-		IAI47_17335	0.39	-1.1
3,672,367	+		IAI47_17335	0.39	+0.4
3,672,367	+		IAI47_17335	0.39	+1.4
3,672,367	+		IAI47_17335	0.39	+0.7
3,672,367	+		IAI47_17335	0.39	-2.2
3,672,431	+		IAI47_17335	0.43	+0.7
3,672,431	+		IAI47_17335	0.43	+1.1
3,672,431	+		IAI47_17335	0.43	-0.9
3,672,431	+		IAI47_17335	0.43	+0.9
3,672,431	+		IAI47_17335	0.43	+0.5
3,672,431	+		IAI47_17335	0.43	+1.8
3,672,431	+		IAI47_17335	0.43	-0.1
3,672,431	+		IAI47_17335	0.43	+0.2
3,672,431	+		IAI47_17335	0.43	+1.0
3,672,431	+		IAI47_17335	0.43	-0.5
3,672,431	+		IAI47_17335	0.43	-2.2
3,672,431	+		IAI47_17335	0.43	+1.7
3,672,431	+		IAI47_17335	0.43	+0.2
3,672,431	+		IAI47_17335	0.43	+0.7
3,672,431	+		IAI47_17335	0.43	-0.1
3,672,432	-		IAI47_17335	0.43	+1.0
3,672,432	-		IAI47_17335	0.43	+0.9
3,672,432	-		IAI47_17335	0.43	+0.3
3,672,432	-		IAI47_17335	0.43	-0.5
3,672,432	-		IAI47_17335	0.43	-2.1
3,672,432	-		IAI47_17335	0.43	+0.1
3,672,432	-		IAI47_17335	0.43	-0.6
3,672,432	-		IAI47_17335	0.43	-0.0
3,672,432	-		IAI47_17335	0.43	+0.6
3,672,432	-		IAI47_17335	0.43	-0.1
3,672,432	-		IAI47_17335	0.43	+1.8
3,672,460	+		IAI47_17335	0.45	-1.3
3,672,461	-		IAI47_17335	0.45	+0.1
3,672,494	-		IAI47_17335	0.47	+0.1
3,672,632	-		IAI47_17335	0.55	+2.1
3,672,632	-		IAI47_17335	0.55	+0.1
3,672,637	+		IAI47_17335	0.55	-0.3
3,672,637	+		IAI47_17335	0.55	+1.4
3,672,637	+		IAI47_17335	0.55	+1.6
3,672,638	-		IAI47_17335	0.55	+0.2
3,672,647	+		IAI47_17335	0.56	+0.6
3,672,648	-		IAI47_17335	0.56	+1.0
3,672,648	-		IAI47_17335	0.56	-0.2
3,672,648	-		IAI47_17335	0.56	+0.7
3,672,648	-		IAI47_17335	0.56	+2.6
3,672,648	-		IAI47_17335	0.56	+0.3
3,672,649	+		IAI47_17335	0.56	+0.4
3,672,649	+		IAI47_17335	0.56	+0.5
3,672,699	-		IAI47_17335	0.59	+0.0
3,672,699	-		IAI47_17335	0.59	-0.5
3,672,718	-		IAI47_17335	0.60	+2.4
3,672,718	-		IAI47_17335	0.60	+0.5
3,672,732	+		IAI47_17335	0.61	-0.4
3,672,733	-		IAI47_17335	0.61	+0.1
3,672,733	-		IAI47_17335	0.61	+0.6
3,672,843	+		IAI47_17335	0.67	+0.4
3,672,844	-		IAI47_17335	0.67	+0.8
3,672,937	+		IAI47_17335	0.73	+1.3
3,672,938	-		IAI47_17335	0.73	-0.1
3,672,996	+		IAI47_17335	0.76	+0.5
3,673,026	+		IAI47_17335	0.78	+1.0
3,673,085	-		IAI47_17335	0.81	+3.4
3,673,117	+		IAI47_17335	0.83	+1.8
3,673,117	+		IAI47_17335	0.83	+0.6
3,673,117	+		IAI47_17335	0.83	-0.5
3,673,117	+		IAI47_17335	0.83	+1.1
3,673,117	+		IAI47_17335	0.83	+0.9
3,673,118	-		IAI47_17335	0.83	+0.3
3,673,118	-		IAI47_17335	0.83	-0.4
3,673,118	-		IAI47_17335	0.83	-0.9
3,673,118	-		IAI47_17335	0.83	+0.9
3,673,130	+		IAI47_17335	0.84	-1.2
3,673,169	+		IAI47_17335	0.86	-0.1
3,673,170	-		IAI47_17335	0.86	+1.7
3,673,172	-		IAI47_17335	0.86	-1.2
3,673,172	-		IAI47_17335	0.86	-1.1
3,673,172	-		IAI47_17335	0.86	+0.7
3,673,177	+		IAI47_17335	0.87	+4.1
3,673,177	+		IAI47_17335	0.87	+1.4
3,673,178	-		IAI47_17335	0.87	+1.0
3,673,178	-		IAI47_17335	0.87	+0.0
3,673,178	-		IAI47_17335	0.87	+0.7
3,673,178	-		IAI47_17335	0.87	-1.9
3,673,178	-		IAI47_17335	0.87	+2.8
3,673,212	+		IAI47_17335	0.89	-2.2
3,673,212	+		IAI47_17335	0.89	+0.4
3,673,212	+		IAI47_17335	0.89	-0.3
3,673,212	+		IAI47_17335	0.89	+3.3
3,673,212	+		IAI47_17335	0.89	+0.3
3,673,213	-		IAI47_17335	0.89	-0.5
3,673,213	-		IAI47_17335	0.89	-1.6
3,673,213	-		IAI47_17335	0.89	+1.2
3,673,218	+		IAI47_17335	0.89	+0.2
3,673,218	+		IAI47_17335	0.89	+0.5
3,673,218	+		IAI47_17335	0.89	+0.3
3,673,218	+		IAI47_17335	0.89	+1.6
3,673,218	+		IAI47_17335	0.89	+1.8
3,673,218	+		IAI47_17335	0.89	-0.0
3,673,218	+		IAI47_17335	0.89	-1.0
3,673,218	+		IAI47_17335	0.89	+1.2
3,673,218	+		IAI47_17335	0.89	+0.6
3,673,218	+		IAI47_17335	0.89	+0.0
3,673,219	-		IAI47_17335	0.89	-0.0
3,673,219	-		IAI47_17335	0.89	+1.1
3,673,219	-		IAI47_17335	0.89	+0.9
3,673,219	-		IAI47_17335	0.89	+0.2
3,673,219	-		IAI47_17335	0.89	+0.6
3,673,219	-		IAI47_17335	0.89	+0.6
3,673,219	-		IAI47_17335	0.89	+1.0
3,673,219	-		IAI47_17335	0.89	-0.6
3,673,219	-		IAI47_17335	0.89	-0.5
3,673,221	+		IAI47_17335	0.89	-0.5
3,673,221	+				+0.2
3,673,221	+		IAI47_17335	0.89	+0.4
3,673,221	+		IAI47_17335	0.89	-1.0
3,673,221	+		IAI47_17335	0.89	+2.0
3,673,222	-		IAI47_17335	0.89	-0.1
3,673,222	-		IAI47_17335	0.89	-0.4
3,673,228	+		IAI47_17335	0.90	+2.8
3,673,276	+				-0.0
3,673,276	+				+1.1
3,673,276	+				-0.4
3,673,276	+				-1.0
3,673,276	+				-0.2
3,673,276	+				+0.1
3,673,277	-				-1.0
3,673,277	-				+0.4
3,673,394	-				+4.3
3,673,394	-				-0.4
3,673,400	+				-0.3
3,673,400	+				-0.5
3,673,400	+				-0.2
3,673,400	+				-0.7
3,673,400	+				-0.4
3,673,448	+				+1.0
3,673,449	-				+0.1
3,673,481	+				-0.6
3,673,481	+				+0.7
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