Strain Fitness in Pantoea sp. MT58 around IAI47_08975

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,896,369	+		IAI47_08970	0.56	+0.5
1,896,369	+		IAI47_08970	0.56	+1.8
1,896,370	-		IAI47_08970	0.56	-1.2
1,896,370	-		IAI47_08970	0.56	-1.6
1,896,370	-		IAI47_08970	0.56	-1.5
1,896,445	+		IAI47_08970	0.60	-1.5
1,896,446	-		IAI47_08970	0.60	+0.1
1,896,477	+		IAI47_08970	0.61	+0.4
1,896,478	-		IAI47_08970	0.61	-0.1
1,896,478	-		IAI47_08970	0.61	-0.3
1,896,478	-		IAI47_08970	0.61	-0.3
1,896,478	-		IAI47_08970	0.61	+0.3
1,896,535	+		IAI47_08970	0.65	-0.8
1,896,535	+		IAI47_08970	0.65	-1.9
1,896,535	+		IAI47_08970	0.65	+1.4
1,896,535	+		IAI47_08970	0.65	+1.2
1,896,535	+		IAI47_08970	0.65	+0.4
1,896,535	+		IAI47_08970	0.65	-0.2
1,896,535	+		IAI47_08970	0.65	+0.9
1,896,535	+		IAI47_08970	0.65	-0.1
1,896,536	-		IAI47_08970	0.65	-1.0
1,896,536	-		IAI47_08970	0.65	+1.4
1,896,536	-		IAI47_08970	0.65	+0.7
1,896,536	-		IAI47_08970	0.65	-0.1
1,896,536	-		IAI47_08970	0.65	+0.6
1,896,536	-		IAI47_08970	0.65	-0.1
1,896,536	-		IAI47_08970	0.65	-1.3
1,896,536	-		IAI47_08970	0.65	-0.2
1,896,536	-		IAI47_08970	0.65	+0.7
1,896,536	-		IAI47_08970	0.65	-1.9
1,896,557	+		IAI47_08970	0.66	+2.1
1,896,568	+		IAI47_08970	0.66	-0.3
1,896,569	-		IAI47_08970	0.66	-1.4
1,896,569	-		IAI47_08970	0.66	+0.6
1,896,570	+		IAI47_08970	0.66	-2.0
1,896,570	+		IAI47_08970	0.66	-0.3
1,896,570	+		IAI47_08970	0.66	+0.9
1,896,571	-		IAI47_08970	0.66	-0.1
1,896,571	-		IAI47_08970	0.66	+0.4
1,896,571	-		IAI47_08970	0.66	+2.0
1,896,571	-		IAI47_08970	0.66	+0.1
1,896,611	-		IAI47_08970	0.69	+1.2
1,896,627	+		IAI47_08970	0.69	-1.9
1,896,631	-		IAI47_08970	0.70	+2.1
1,896,631	-		IAI47_08970	0.70	-0.2
1,896,631	-		IAI47_08970	0.70	-1.2
1,896,685	-		IAI47_08970	0.73	+0.2
1,896,691	+		IAI47_08970	0.73	+0.7
1,896,691	+		IAI47_08970	0.73	+1.1
1,896,691	+		IAI47_08970	0.73	+2.7
1,896,699	+		IAI47_08970	0.73	-0.6
1,896,700	-		IAI47_08970	0.73	+2.2
1,896,700	-		IAI47_08970	0.73	+2.3
1,896,711	+		IAI47_08970	0.74	-0.8
1,896,711	+		IAI47_08970	0.74	+0.7
1,896,711	+		IAI47_08970	0.74	-1.1
1,896,711	+		IAI47_08970	0.74	+1.6
1,896,712	-		IAI47_08970	0.74	+2.1
1,896,712	-		IAI47_08970	0.74	+0.5
1,896,712	-		IAI47_08970	0.74	-0.6
1,896,712	-		IAI47_08970	0.74	-0.0
1,896,714	+		IAI47_08970	0.74	-1.1
1,896,714	+		IAI47_08970	0.74	+1.2
1,896,715	-		IAI47_08970	0.74	-0.4
1,896,715	-		IAI47_08970	0.74	-1.2
1,896,729	+		IAI47_08970	0.75	-0.2
1,896,729	+		IAI47_08970	0.75	+0.3
1,896,729	+		IAI47_08970	0.75	-0.8
1,896,730	-		IAI47_08970	0.75	-0.3
1,896,730	-		IAI47_08970	0.75	-1.2
1,896,730	-		IAI47_08970	0.75	+0.4
1,896,730	-		IAI47_08970	0.75	+0.1
1,896,730	-		IAI47_08970	0.75	-0.2
1,896,747	+		IAI47_08970	0.76	-1.9
1,896,748	-		IAI47_08970	0.76	-1.0
1,896,795	+		IAI47_08970	0.78	-0.6
1,896,795	+		IAI47_08970	0.78	+1.5
1,896,795	+		IAI47_08970	0.78	+1.0
1,896,795	+		IAI47_08970	0.78	-0.3
1,896,795	+		IAI47_08970	0.78	+0.1
1,896,795	+		IAI47_08970	0.78	-1.2
1,896,796	-		IAI47_08970	0.79	-0.9
1,896,796	-		IAI47_08970	0.79	-1.7
1,896,833	+		IAI47_08970	0.81	-0.1
1,896,853	+		IAI47_08970	0.82	+1.5
1,896,854	-		IAI47_08970	0.82	+0.3
1,896,854	-		IAI47_08970	0.82	+0.2
1,896,985	+		IAI47_08970	0.89	+0.1
1,896,995	+		IAI47_08970	0.89	-0.5
1,897,112	-				+0.0
1,897,120	+				-0.2
1,897,121	-				+0.9
1,897,132	+				+0.4
1,897,132	+				-0.2
1,897,176	-				+1.5
1,897,207	+				+1.1
1,897,208	-				-1.2
1,897,211	+				-0.1
1,897,211	+				+0.7
1,897,211	+				-0.3
1,897,211	+				-0.4
1,897,211	+				+0.7
1,897,211	+				+1.5
1,897,211	+				+1.8
1,897,211	+				+1.4
1,897,212	-				+0.7
1,897,212	-				+1.0
1,897,212	-				+0.1
1,897,212	-				+1.7
1,897,212	-				-1.5
1,897,212	-				-0.5
1,897,215	+				+0.5
1,897,216	-				-0.8
1,897,216	-				+0.9
1,897,266	-				-1.2
1,897,281	-				+2.9
1,897,311	+				-0.5
1,897,348	+				+1.1
1,897,348	+				-0.8
1,897,348	+				+3.1
1,897,349	-				+1.2
1,897,349	-				+2.4
1,897,349	-				+0.7
1,897,385	+				-1.0
1,897,385	+				+0.1
1,897,510	-		IAI47_08975	0.26	-0.7
1,897,510	-		IAI47_08975	0.26	-0.0
1,897,517	+		IAI47_08975	0.27	+0.9
1,897,518	-		IAI47_08975	0.27	+0.1
1,897,597	-		IAI47_08975	0.41	-1.2
1,897,644	-		IAI47_08975	0.50	+0.7
1,897,668	+		IAI47_08975	0.54	+0.7
1,897,669	-		IAI47_08975	0.54	-0.4
1,897,669	-		IAI47_08975	0.54	+0.0
1,897,756	-		IAI47_08975	0.70	-2.3
1,897,793	+		IAI47_08975	0.77	-2.1
1,897,793	+		IAI47_08975	0.77	-1.3
1,897,793	+		IAI47_08975	0.77	-1.7
1,897,827	+		IAI47_08975	0.83	+1.6
1,897,828	-		IAI47_08975	0.83	-2.1
1,897,828	-		IAI47_08975	0.83	-0.9
1,897,843	+		IAI47_08975	0.86	-2.2
1,897,875	+				+0.8
1,897,875	+				-1.7
1,897,875	+				+0.6
1,897,876	-				+1.2
1,897,876	-				+0.8
1,897,912	+				+1.4
1,897,912	+				-0.1
1,897,912	+				+1.9
1,897,999	+				+0.7
1,897,999	+				+0.7
1,897,999	+				+0.2
1,897,999	+				-0.1
1,898,008	+				-0.9
1,898,009	-				+0.5
1,898,030	+				+0.9
1,898,031	-				+0.3
1,898,031	-				+1.1
1,898,031	-				+0.4
1,898,035	+				+0.5
1,898,035	+				-1.1
1,898,035	+				+2.0
1,898,036	-				-0.3
1,898,036	-				+0.2
1,898,036	-				+1.1
1,898,073	-				+1.2
1,898,095	-				-1.8
1,898,095	-				-0.3
1,898,101	+				-0.1
1,898,102	-				-2.4
1,898,102	-				+0.5
1,898,123	+				+0.5
1,898,153	+				+0.9
1,898,167	+				+1.5
1,898,236	+				+0.5
1,898,271	+				+0.8
1,898,271	+				+1.4
1,898,271	+				-1.7
1,898,271	+				+1.0
1,898,272	-				-0.2
1,898,272	-				-1.3
1,898,272	-				+0.3
1,898,272	-				-2.5
1,898,272	-				-1.9
1,898,272	-				+1.4
1,898,336	+		IAI47_08980	0.12	-0.3
1,898,336	+		IAI47_08980	0.12	-0.3
1,898,337	-		IAI47_08980	0.12	+1.4
1,898,337	-		IAI47_08980	0.12	+3.0
1,898,489	+		IAI47_08980	0.20	+0.4
1,898,625	+		IAI47_08980	0.27	+0.3
1,898,625	+		IAI47_08980	0.27	+0.1
1,898,625	+		IAI47_08980	0.27	-0.3
1,898,626	-		IAI47_08980	0.27	-1.1
1,898,633	+		IAI47_08980	0.27	+0.7
1,898,634	-		IAI47_08980	0.27	+2.5
1,898,634	-		IAI47_08980	0.27	+0.7
1,898,667	-		IAI47_08980	0.29	-1.9
1,898,667	-		IAI47_08980	0.29	-0.1
1,898,677	-		IAI47_08980	0.29	-1.3
1,898,677	-		IAI47_08980	0.29	-1.8
1,898,704	+		IAI47_08980	0.31	+0.6
1,898,772	+		IAI47_08980	0.34	-0.7
1,898,773	-		IAI47_08980	0.34	+1.2
1,898,792	+		IAI47_08980	0.35	-0.2
1,898,792	+		IAI47_08980	0.35	+1.1
1,898,792	+		IAI47_08980	0.35	+0.9
1,898,793	-		IAI47_08980	0.36	-0.2
1,898,795	+		IAI47_08980	0.36	+0.9
1,898,795	+		IAI47_08980	0.36	+0.7
1,898,795	+		IAI47_08980	0.36	+0.1
1,898,795	+		IAI47_08980	0.36	-0.8
1,898,795	+		IAI47_08980	0.36	-0.9
1,898,795	+		IAI47_08980	0.36	+1.1
1,898,795	+		IAI47_08980	0.36	+0.1
1,898,795	+		IAI47_08980	0.36	+1.2
1,898,796	-		IAI47_08980	0.36	+1.3
1,898,796	-		IAI47_08980	0.36	+2.2
1,898,796	-		IAI47_08980	0.36	+1.2
1,898,796	-		IAI47_08980	0.36	-0.8
1,898,796	-		IAI47_08980	0.36	-0.3
1,898,796	-		IAI47_08980	0.36	-0.9
1,898,796	-		IAI47_08980	0.36	-0.9
1,898,796	-		IAI47_08980	0.36	+0.7
1,898,796	-		IAI47_08980	0.36	+2.0
1,898,796	-		IAI47_08980	0.36	-0.1
1,898,796	-		IAI47_08980	0.36	+1.4
1,898,796	-		IAI47_08980	0.36	+0.1
1,898,797	+		IAI47_08980	0.36	+1.8
1,898,798	-		IAI47_08980	0.36	-1.6
1,898,820	-		IAI47_08980	0.37	-2.7
1,898,820	-		IAI47_08980	0.37	-0.9
1,898,918	+		IAI47_08980	0.42	-1.9