Strain Fitness in Pantoea sp. MT58 around IAI47_20025

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20020 and IAI47_20025 are separated by 80 nucleotidesIAI47_20025 and IAI47_20030 are separated by 10 nucleotidesIAI47_20030 and IAI47_20035 are separated by 10 nucleotides IAI47_20020: IAI47_20020 - amidohydrolase, at 236,357 to 237,508 _20020 IAI47_20025: IAI47_20025 - LLM class flavin-dependent oxidoreductase, at 237,589 to 238,902 _20025 IAI47_20030: IAI47_20030 - ABC transporter substrate-binding protein, at 238,913 to 239,854 _20030 IAI47_20035: IAI47_20035 - GNAT family N-acetyltransferase, at 239,865 to 240,377 _20035 Position (kb) 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2 3at 236.700 kb on + strand, within IAI47_20020at 236.700 kb on + strand, within IAI47_20020at 236.701 kb on - strand, within IAI47_20020at 236.701 kb on - strand, within IAI47_20020at 236.712 kb on + strand, within IAI47_20020at 236.716 kb on + strand, within IAI47_20020at 236.716 kb on + strand, within IAI47_20020at 236.716 kb on + strand, within IAI47_20020at 236.716 kb on + strand, within IAI47_20020at 236.716 kb on + strand, within IAI47_20020at 236.717 kb on - strand, within IAI47_20020at 236.717 kb on - strand, within IAI47_20020at 236.717 kb on - strand, within IAI47_20020at 236.717 kb on - strand, within IAI47_20020at 236.717 kb on - strand, within IAI47_20020at 236.764 kb on + strand, within IAI47_20020at 236.764 kb on + strand, within IAI47_20020at 236.765 kb on - strand, within IAI47_20020at 236.778 kb on + strand, within IAI47_20020at 236.779 kb on - strand, within IAI47_20020at 236.779 kb on - strand, within IAI47_20020at 236.790 kb on + strand, within IAI47_20020at 236.790 kb on + strand, within IAI47_20020at 236.790 kb on + strand, within IAI47_20020at 236.790 kb on + strand, within IAI47_20020at 236.791 kb on - strand, within IAI47_20020at 236.791 kb on - strand, within IAI47_20020at 236.864 kb on + strand, within IAI47_20020at 236.872 kb on + strand, within IAI47_20020at 236.872 kb on + strand, within IAI47_20020at 236.884 kb on + strand, within IAI47_20020at 236.884 kb on + strand, within IAI47_20020at 236.888 kb on - strand, within IAI47_20020at 237.028 kb on + strand, within IAI47_20020at 237.028 kb on + strand, within IAI47_20020at 237.029 kb on - strand, within IAI47_20020at 237.031 kb on + strand, within IAI47_20020at 237.032 kb on - strand, within IAI47_20020at 237.032 kb on - strand, within IAI47_20020at 237.032 kb on - strand, within IAI47_20020at 237.032 kb on - strand, within IAI47_20020at 237.032 kb on - strand, within IAI47_20020at 237.066 kb on + strand, within IAI47_20020at 237.111 kb on + strand, within IAI47_20020at 237.112 kb on - strand, within IAI47_20020at 237.112 kb on - strand, within IAI47_20020at 237.326 kb on + strand, within IAI47_20020at 237.326 kb on + strand, within IAI47_20020at 237.438 kb on - strandat 237.438 kb on - strandat 237.438 kb on - strandat 237.475 kb on + strandat 237.476 kb on - strandat 237.565 kb on + strandat 237.565 kb on + strandat 237.565 kb on + strandat 237.566 kb on - strandat 237.618 kb on + strandat 237.619 kb on - strandat 237.717 kb on + strandat 237.768 kb on + strand, within IAI47_20025at 237.768 kb on + strand, within IAI47_20025at 237.768 kb on + strand, within IAI47_20025at 237.769 kb on - strand, within IAI47_20025at 237.769 kb on - strand, within IAI47_20025at 237.771 kb on + strand, within IAI47_20025at 237.772 kb on - strand, within IAI47_20025at 237.883 kb on + strand, within IAI47_20025at 237.883 kb on + strand, within IAI47_20025at 237.884 kb on - strand, within IAI47_20025at 237.884 kb on - strand, within IAI47_20025at 237.884 kb on - strand, within IAI47_20025at 237.884 kb on - strand, within IAI47_20025at 238.048 kb on + strand, within IAI47_20025at 238.048 kb on + strand, within IAI47_20025at 238.048 kb on + strand, within IAI47_20025at 238.049 kb on - strand, within IAI47_20025at 238.049 kb on - strand, within IAI47_20025at 238.049 kb on - strand, within IAI47_20025at 238.049 kb on - strand, within IAI47_20025at 238.142 kb on + strand, within IAI47_20025at 238.142 kb on + strand, within IAI47_20025at 238.143 kb on - strand, within IAI47_20025at 238.143 kb on - strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.147 kb on - strand, within IAI47_20025at 238.147 kb on - strand, within IAI47_20025at 238.147 kb on - strand, within IAI47_20025at 238.147 kb on - strand, within IAI47_20025at 238.225 kb on - strand, within IAI47_20025at 238.225 kb on - strand, within IAI47_20025at 238.463 kb on + strand, within IAI47_20025at 238.464 kb on - strand, within IAI47_20025at 238.464 kb on - strand, within IAI47_20025at 238.486 kb on + strand, within IAI47_20025at 238.486 kb on + strand, within IAI47_20025at 238.486 kb on + strand, within IAI47_20025at 238.486 kb on + strand, within IAI47_20025at 238.487 kb on - strand, within IAI47_20025at 238.534 kb on + strand, within IAI47_20025at 238.534 kb on + strand, within IAI47_20025at 238.535 kb on - strand, within IAI47_20025at 238.562 kb on + strand, within IAI47_20025at 238.562 kb on + strand, within IAI47_20025at 238.562 kb on + strand, within IAI47_20025at 238.562 kb on + strand, within IAI47_20025at 238.562 kb on + strand, within IAI47_20025at 238.562 kb on + strand, within IAI47_20025at 238.562 kb on + strand, within IAI47_20025at 238.563 kb on - strand, within IAI47_20025at 238.563 kb on - strand, within IAI47_20025at 238.563 kb on - strand, within IAI47_20025at 238.563 kb on - strand, within IAI47_20025at 238.563 kb on - strand, within IAI47_20025at 238.759 kb on - strand, within IAI47_20025at 238.901 kb on - strandat 238.901 kb on - strandat 238.901 kb on - strandat 238.945 kb on + strandat 238.945 kb on + strandat 238.945 kb on + strandat 238.945 kb on + strandat 238.946 kb on - strandat 238.946 kb on - strandat 238.981 kb on + strandat 238.982 kb on - strandat 238.982 kb on - strandat 238.994 kb on + strandat 238.994 kb on + strandat 238.994 kb on + strandat 238.995 kb on - strandat 239.041 kb on + strand, within IAI47_20030at 239.042 kb on - strand, within IAI47_20030at 239.110 kb on + strand, within IAI47_20030at 239.288 kb on + strand, within IAI47_20030at 239.288 kb on + strand, within IAI47_20030at 239.288 kb on + strand, within IAI47_20030at 239.289 kb on - strand, within IAI47_20030at 239.289 kb on - strand, within IAI47_20030at 239.289 kb on - strand, within IAI47_20030at 239.289 kb on - strand, within IAI47_20030at 239.289 kb on - strand, within IAI47_20030at 239.308 kb on + strand, within IAI47_20030at 239.350 kb on + strand, within IAI47_20030at 239.351 kb on - strand, within IAI47_20030at 239.351 kb on - strand, within IAI47_20030at 239.354 kb on + strand, within IAI47_20030at 239.355 kb on - strand, within IAI47_20030at 239.413 kb on + strand, within IAI47_20030at 239.515 kb on - strand, within IAI47_20030at 239.515 kb on - strand, within IAI47_20030at 239.515 kb on - strand, within IAI47_20030at 239.515 kb on - strand, within IAI47_20030at 239.524 kb on + strand, within IAI47_20030at 239.524 kb on + strand, within IAI47_20030at 239.534 kb on + strand, within IAI47_20030at 239.535 kb on - strand, within IAI47_20030at 239.591 kb on + strand, within IAI47_20030at 239.591 kb on + strand, within IAI47_20030at 239.591 kb on + strand, within IAI47_20030at 239.591 kb on + strand, within IAI47_20030at 239.591 kb on + strand, within IAI47_20030at 239.591 kb on + strand, within IAI47_20030at 239.591 kb on + strand, within IAI47_20030at 239.591 kb on + strand, within IAI47_20030at 239.591 kb on + strand, within IAI47_20030at 239.592 kb on - strand, within IAI47_20030at 239.592 kb on - strand, within IAI47_20030at 239.639 kb on - strand, within IAI47_20030at 239.772 kb on - strandat 239.772 kb on - strandat 239.852 kb on + strandat 239.852 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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236,700 + IAI47_20020 0.30 +0.7
236,700 + IAI47_20020 0.30 +0.3
236,701 - IAI47_20020 0.30 +1.3
236,701 - IAI47_20020 0.30 -1.5
236,712 + IAI47_20020 0.31 +0.4
236,716 + IAI47_20020 0.31 -0.1
236,716 + IAI47_20020 0.31 +1.8
236,716 + IAI47_20020 0.31 -0.7
236,716 + IAI47_20020 0.31 -0.2
236,716 + IAI47_20020 0.31 -0.6
236,717 - IAI47_20020 0.31 -0.7
236,717 - IAI47_20020 0.31 +0.2
236,717 - IAI47_20020 0.31 -1.0
236,717 - IAI47_20020 0.31 -0.5
236,717 - IAI47_20020 0.31 +0.2
236,764 + IAI47_20020 0.35 +1.0
236,764 + IAI47_20020 0.35 +0.2
236,765 - IAI47_20020 0.35 -1.1
236,778 + IAI47_20020 0.37 +0.3
236,779 - IAI47_20020 0.37 +0.9
236,779 - IAI47_20020 0.37 -0.0
236,790 + IAI47_20020 0.38 +0.6
236,790 + IAI47_20020 0.38 +0.1
236,790 + IAI47_20020 0.38 +2.3
236,790 + IAI47_20020 0.38 +0.5
236,791 - IAI47_20020 0.38 +0.2
236,791 - IAI47_20020 0.38 +0.2
236,864 + IAI47_20020 0.44 +0.9
236,872 + IAI47_20020 0.45 -1.6
236,872 + IAI47_20020 0.45 +0.2
236,884 + IAI47_20020 0.46 +1.5
236,884 + IAI47_20020 0.46 +0.4
236,888 - IAI47_20020 0.46 -0.1
237,028 + IAI47_20020 0.58 +1.7
237,028 + IAI47_20020 0.58 +0.7
237,029 - IAI47_20020 0.58 +0.2
237,031 + IAI47_20020 0.59 +1.0
237,032 - IAI47_20020 0.59 +0.5
237,032 - IAI47_20020 0.59 +2.9
237,032 - IAI47_20020 0.59 +1.9
237,032 - IAI47_20020 0.59 +1.4
237,032 - IAI47_20020 0.59 +0.5
237,066 + IAI47_20020 0.62 -0.7
237,111 + IAI47_20020 0.65 +2.2
237,112 - IAI47_20020 0.66 +0.2
237,112 - IAI47_20020 0.66 +1.0
237,326 + IAI47_20020 0.84 -1.4
237,326 + IAI47_20020 0.84 +0.5
237,438 - +0.2
237,438 - +0.6
237,438 - -0.4
237,475 + -0.0
237,476 - +1.6
237,565 + -0.2
237,565 + +0.6
237,565 + +1.3
237,566 - +0.2
237,618 + -0.2
237,619 - +0.4
237,717 + +0.1
237,768 + IAI47_20025 0.14 -0.1
237,768 + IAI47_20025 0.14 +0.3
237,768 + IAI47_20025 0.14 +2.0
237,769 - IAI47_20025 0.14 -0.0
237,769 - IAI47_20025 0.14 +1.3
237,771 + IAI47_20025 0.14 +0.5
237,772 - IAI47_20025 0.14 -0.2
237,883 + IAI47_20025 0.22 -2.0
237,883 + IAI47_20025 0.22 +1.5
237,884 - IAI47_20025 0.22 -2.5
237,884 - IAI47_20025 0.22 +0.8
237,884 - IAI47_20025 0.22 -0.9
237,884 - IAI47_20025 0.22 +0.1
238,048 + IAI47_20025 0.35 -1.7
238,048 + IAI47_20025 0.35 +0.9
238,048 + IAI47_20025 0.35 +0.9
238,049 - IAI47_20025 0.35 -0.2
238,049 - IAI47_20025 0.35 +2.0
238,049 - IAI47_20025 0.35 +0.4
238,049 - IAI47_20025 0.35 -0.0
238,142 + IAI47_20025 0.42 +0.0
238,142 + IAI47_20025 0.42 -0.7
238,143 - IAI47_20025 0.42 -0.0
238,143 - IAI47_20025 0.42 +3.3
238,146 + IAI47_20025 0.42 -1.8
238,146 + IAI47_20025 0.42 -0.2
238,146 + IAI47_20025 0.42 +0.6
238,146 + IAI47_20025 0.42 -1.2
238,146 + IAI47_20025 0.42 +1.1
238,146 + IAI47_20025 0.42 -0.2
238,146 + IAI47_20025 0.42 +1.0
238,147 - IAI47_20025 0.42 -0.5
238,147 - IAI47_20025 0.42 +1.0
238,147 - IAI47_20025 0.42 -0.7
238,147 - IAI47_20025 0.42 +1.9
238,225 - IAI47_20025 0.48 -0.1
238,225 - IAI47_20025 0.48 +0.5
238,463 + IAI47_20025 0.67 -0.2
238,464 - IAI47_20025 0.67 +0.3
238,464 - IAI47_20025 0.67 +2.1
238,486 + IAI47_20025 0.68 +0.0
238,486 + IAI47_20025 0.68 +0.8
238,486 + IAI47_20025 0.68 -0.2
238,486 + IAI47_20025 0.68 +0.4
238,487 - IAI47_20025 0.68 -0.0
238,534 + IAI47_20025 0.72 +0.9
238,534 + IAI47_20025 0.72 -0.3
238,535 - IAI47_20025 0.72 -1.4
238,562 + IAI47_20025 0.74 +1.1
238,562 + IAI47_20025 0.74 -1.4
238,562 + IAI47_20025 0.74 -1.4
238,562 + IAI47_20025 0.74 -2.1
238,562 + IAI47_20025 0.74 +0.2
238,562 + IAI47_20025 0.74 -0.2
238,562 + IAI47_20025 0.74 +0.2
238,563 - IAI47_20025 0.74 -0.1
238,563 - IAI47_20025 0.74 -0.3
238,563 - IAI47_20025 0.74 -1.0
238,563 - IAI47_20025 0.74 +0.3
238,563 - IAI47_20025 0.74 +0.0
238,759 - IAI47_20025 0.89 -0.6
238,901 - -1.6
238,901 - +1.6
238,901 - -0.7
238,945 + -0.5
238,945 + -0.4
238,945 + -1.7
238,945 + +0.7
238,946 - -1.8
238,946 - +0.2
238,981 + -0.7
238,982 - -0.1
238,982 - +1.5
238,994 + +1.4
238,994 + +1.0
238,994 + -0.4
238,995 - -0.4
239,041 + IAI47_20030 0.14 +2.3
239,042 - IAI47_20030 0.14 +1.0
239,110 + IAI47_20030 0.21 -0.1
239,288 + IAI47_20030 0.40 +1.1
239,288 + IAI47_20030 0.40 +0.7
239,288 + IAI47_20030 0.40 -0.2
239,289 - IAI47_20030 0.40 -2.2
239,289 - IAI47_20030 0.40 -0.2
239,289 - IAI47_20030 0.40 +1.8
239,289 - IAI47_20030 0.40 +1.5
239,289 - IAI47_20030 0.40 +0.2
239,308 + IAI47_20030 0.42 -0.7
239,350 + IAI47_20030 0.46 -1.2
239,351 - IAI47_20030 0.46 +1.0
239,351 - IAI47_20030 0.46 +1.0
239,354 + IAI47_20030 0.47 +1.7
239,355 - IAI47_20030 0.47 +0.2
239,413 + IAI47_20030 0.53 +0.6
239,515 - IAI47_20030 0.64 +0.4
239,515 - IAI47_20030 0.64 +2.2
239,515 - IAI47_20030 0.64 +0.3
239,515 - IAI47_20030 0.64 +0.9
239,524 + IAI47_20030 0.65 +1.5
239,524 + IAI47_20030 0.65 +0.4
239,534 + IAI47_20030 0.66 +1.2
239,535 - IAI47_20030 0.66 -0.8
239,591 + IAI47_20030 0.72 -0.1
239,591 + IAI47_20030 0.72 -1.4
239,591 + IAI47_20030 0.72 +1.3
239,591 + IAI47_20030 0.72 +0.2
239,591 + IAI47_20030 0.72 -0.0
239,591 + IAI47_20030 0.72 -0.2
239,591 + IAI47_20030 0.72 -1.5
239,591 + IAI47_20030 0.72 +1.0
239,591 + IAI47_20030 0.72 -1.3
239,592 - IAI47_20030 0.72 +0.3
239,592 - IAI47_20030 0.72 +0.4
239,639 - IAI47_20030 0.77 -0.3
239,772 - +1.4
239,772 - -0.0
239,852 + -0.1
239,852 + +0.3

Or see this region's nucleotide sequence