Strain Fitness in Pantoea sp. MT58 around IAI47_15105

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,183,619	+		IAI47_15095	0.20	+0.6
3,183,619	+		IAI47_15095	0.20	+0.7
3,183,619	+		IAI47_15095	0.20	+0.2
3,183,619	+		IAI47_15095	0.20	-1.4
3,183,619	+		IAI47_15095	0.20	-1.0
3,183,620	-		IAI47_15095	0.20	-1.7
3,183,620	-		IAI47_15095	0.20	+0.8
3,183,620	-		IAI47_15095	0.20	-0.5
3,183,659	+		IAI47_15095	0.31	-0.1
3,183,659	+		IAI47_15095	0.31	-0.5
3,183,659	+		IAI47_15095	0.31	+0.0
3,183,659	+		IAI47_15095	0.31	+0.1
3,183,659	+		IAI47_15095	0.31	-0.1
3,183,660	-		IAI47_15095	0.32	-0.9
3,183,660	-		IAI47_15095	0.32	-0.1
3,183,828	+		IAI47_15095	0.80	-1.8
3,183,829	-		IAI47_15095	0.80	+3.9
3,183,829	-		IAI47_15095	0.80	+0.1
3,183,897	+				-0.6
3,183,897	+				-0.3
3,183,897	+				+1.4
3,183,897	+				+0.4
3,183,898	-				+0.5
3,183,898	-				+1.0
3,183,898	-				-0.5
3,183,919	+				-1.5
3,183,919	+				-1.3
3,183,919	+				+0.7
3,183,919	+				-0.7
3,183,920	-				+0.1
3,183,920	-				+0.8
3,184,013	+		IAI47_15100	0.25	+0.7
3,184,013	+		IAI47_15100	0.25	-0.7
3,184,014	-		IAI47_15100	0.26	-0.1
3,184,014	-		IAI47_15100	0.26	+0.6
3,184,014	-		IAI47_15100	0.26	+0.2
3,184,014	-		IAI47_15100	0.26	-0.6
3,184,014	-		IAI47_15100	0.26	+0.5
3,184,081	+		IAI47_15100	0.40	-0.6
3,184,081	+		IAI47_15100	0.40	-1.8
3,184,081	+		IAI47_15100	0.40	+0.6
3,184,081	+		IAI47_15100	0.40	+0.2
3,184,082	-		IAI47_15100	0.40	-1.3
3,184,082	-		IAI47_15100	0.40	-1.2
3,184,082	-		IAI47_15100	0.40	-0.0
3,184,082	-		IAI47_15100	0.40	-1.2
3,184,082	-		IAI47_15100	0.40	+0.7
3,184,082	-		IAI47_15100	0.40	+0.1
3,184,082	-		IAI47_15100	0.40	-0.8
3,184,231	+		IAI47_15100	0.72	+0.3
3,184,231	+		IAI47_15100	0.72	+0.2
3,184,235	+		IAI47_15100	0.73	-0.3
3,184,235	+		IAI47_15100	0.73	-1.5
3,184,235	+		IAI47_15100	0.73	+0.3
3,184,235	+		IAI47_15100	0.73	-1.2
3,184,266	+		IAI47_15100	0.79	+1.1
3,184,266	+		IAI47_15100	0.79	-0.5
3,184,266	+		IAI47_15100	0.79	+0.0
3,184,266	+		IAI47_15100	0.79	-0.1
3,184,267	-		IAI47_15100	0.80	+2.5
3,184,267	-		IAI47_15100	0.80	-0.6
3,184,306	+		IAI47_15100	0.88	+2.5
3,184,306	+		IAI47_15100	0.88	+0.1
3,184,306	+		IAI47_15100	0.88	+0.1
3,184,306	+		IAI47_15100	0.88	-0.9
3,184,306	+		IAI47_15100	0.88	-1.9
3,184,306	+		IAI47_15100	0.88	-0.9
3,184,307	-		IAI47_15100	0.88	-0.2
3,184,307	-		IAI47_15100	0.88	-2.3
3,184,307	-		IAI47_15100	0.88	-0.6
3,184,321	+				+0.3
3,184,321	+				+0.6
3,184,321	+				+0.5
3,184,321	+				-1.2
3,184,321	+				-1.3
3,184,322	-				-1.5
3,184,322	-				-1.5
3,184,322	-				+2.0
3,184,322	-				-2.3
3,184,322	-				-1.0
3,184,322	-				-1.2
3,184,341	+				-0.2
3,184,341	+				+0.1
3,184,361	+				+0.4
3,184,361	+				-0.1
3,184,383	+				-0.0
3,184,383	+				+0.5
3,184,383	+				+0.5
3,184,384	-				-1.5
3,184,384	-				-0.7
3,184,384	-				+0.9
3,184,407	-				+0.7
3,184,410	+				+0.3
3,184,411	-				-0.9
3,184,411	-				-2.8
3,184,411	-				-0.7
3,184,411	-				+0.1
3,184,411	-				-0.2
3,184,411	-				-1.8
3,184,414	+				-1.5
3,184,414	+				+0.1
3,184,415	-				+0.1
3,184,415	-				-1.1
3,184,431	+				+1.2
3,184,431	+				+3.3
3,184,432	-				-0.7
3,184,432	-				-1.2
3,184,432	-				-0.8
3,184,432	-				-0.4
3,184,479	-				+0.4
3,184,486	-				-0.4
3,184,486	-				-0.3
3,184,520	+				-0.8
3,184,521	-				-0.9
3,184,521	-				+0.6
3,184,578	+				-1.8
3,184,579	-				-1.9
3,184,795	+		IAI47_15105	0.82	-0.3
3,184,795	+		IAI47_15105	0.82	+1.1
3,184,795	+		IAI47_15105	0.82	+1.6
3,184,796	-		IAI47_15105	0.83	-0.6
3,184,796	-		IAI47_15105	0.83	+1.2
3,184,796	-		IAI47_15105	0.83	-1.4
3,184,827	+				+0.1
3,184,828	-				-0.5
3,184,843	+				+1.2
3,184,843	+				+0.2
3,184,844	-				+1.4
3,184,844	-				-0.3
3,184,863	+				-0.9
3,184,863	+				+3.2
3,184,863	+				-1.4
3,184,864	-				-0.8
3,184,864	-				-0.7
3,184,922	+				+0.2
3,184,922	+				-2.1
3,184,922	+				-0.2
3,184,922	+				-1.3
3,184,922	+				-1.5
3,184,923	-				-0.8
3,184,923	-				-0.3
3,184,924	+				+1.1
3,184,924	+				+0.7
3,184,925	-				-0.4
3,184,957	-				+0.4
3,184,975	+				-0.0
3,184,976	-				-0.1
3,184,976	-				-1.4
3,184,989	+				-1.5
3,184,990	-				-0.7
3,185,057	+				+0.1
3,185,057	+				-0.6
3,185,057	+				-1.7
3,185,057	+				-1.2
3,185,057	+				+0.9
3,185,090	+				-0.1
3,185,090	+				+1.0
3,185,091	-				-0.9
3,185,141	+				-0.6
3,185,141	+				+1.0
3,185,155	+				-0.8
3,185,155	+				+1.1
3,185,156	-				-1.5
3,185,163	-				-0.5
3,185,282	+				+0.4
3,185,282	+				-0.4
3,185,301	+				-1.5
3,185,301	+				-0.6
3,185,448	+		IAI47_15110	0.25	-0.1
3,185,448	+		IAI47_15110	0.25	-1.4
3,185,449	-		IAI47_15110	0.25	-0.4
3,185,449	-		IAI47_15110	0.25	+1.0
3,185,454	+		IAI47_15110	0.26	+0.6
3,185,454	+		IAI47_15110	0.26	-0.6
3,185,454	+		IAI47_15110	0.26	-1.9
3,185,454	+		IAI47_15110	0.26	+0.6
3,185,455	-		IAI47_15110	0.26	+4.8
3,185,526	+		IAI47_15110	0.36	-0.9
3,185,526	+		IAI47_15110	0.36	-1.4
3,185,526	+		IAI47_15110	0.36	-0.3
3,185,541	+		IAI47_15110	0.38	-0.4
3,185,606	+		IAI47_15110	0.46	-1.0
3,185,606	+		IAI47_15110	0.46	-0.3
3,185,607	-		IAI47_15110	0.47	-2.7
3,185,607	-		IAI47_15110	0.47	-0.8
3,185,622	+		IAI47_15110	0.49	-1.8
3,185,686	-		IAI47_15110	0.57	+0.7
3,185,691	+		IAI47_15110	0.58	-0.8
3,185,721	+		IAI47_15110	0.62	+0.6
3,185,721	+		IAI47_15110	0.62	+1.7
3,185,722	-		IAI47_15110	0.62	-1.4