Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_06060 and IAI47_06065 are separated by 242 nucleotides IAI47_06065 and IAI47_06070 overlap by 1 nucleotides IAI47_06070 and IAI47_06075 are separated by 67 nucleotides IAI47_06075 and IAI47_06080 overlap by 4 nucleotides
IAI47_06060: IAI47_06060 - formate/nitrite transporter family protein, at 1,233,967 to 1,234,902
_06060
IAI47_06065: IAI47_06065 - cytochrome c biogenesis heme-transporting ATPase CcmA, at 1,235,145 to 1,235,762
_06065
IAI47_06070: IAI47_06070 - heme exporter protein CcmB, at 1,235,762 to 1,236,421
_06070
IAI47_06075: IAI47_06075 - heme ABC transporter permease, at 1,236,489 to 1,237,229
_06075
IAI47_06080: IAI47_06080 - heme exporter protein CcmD, at 1,237,226 to 1,237,459
_06080
Position (kb) 1235
1236
1237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1234.808 kb on - strand, within IAI47_06060 at 1234.861 kb on + strand at 1234.861 kb on + strand at 1234.862 kb on - strand at 1234.862 kb on - strand at 1234.862 kb on - strand at 1234.884 kb on + strand at 1234.884 kb on + strand at 1234.884 kb on + strand at 1234.918 kb on + strand at 1234.918 kb on + strand at 1234.918 kb on + strand at 1234.918 kb on + strand at 1234.918 kb on + strand at 1234.919 kb on - strand at 1234.919 kb on - strand at 1234.919 kb on - strand at 1234.919 kb on - strand at 1234.927 kb on - strand at 1234.927 kb on - strand at 1234.927 kb on - strand at 1234.933 kb on - strand at 1234.933 kb on - strand at 1234.933 kb on - strand at 1234.933 kb on - strand at 1234.933 kb on - strand at 1234.934 kb on + strand at 1234.934 kb on + strand at 1234.934 kb on + strand at 1234.934 kb on + strand at 1234.935 kb on - strand at 1234.935 kb on - strand at 1234.935 kb on - strand at 1234.935 kb on - strand at 1234.935 kb on - strand at 1234.935 kb on - strand at 1234.935 kb on - strand at 1234.935 kb on - strand at 1234.966 kb on + strand at 1234.967 kb on - strand at 1234.982 kb on + strand at 1234.982 kb on + strand at 1234.982 kb on + strand at 1234.982 kb on + strand at 1234.988 kb on + strand at 1234.988 kb on + strand at 1234.988 kb on + strand at 1234.988 kb on + strand at 1234.989 kb on - strand at 1234.989 kb on - strand at 1235.044 kb on + strand at 1235.044 kb on + strand at 1235.045 kb on - strand at 1235.052 kb on + strand at 1235.104 kb on + strand at 1235.104 kb on + strand at 1235.105 kb on - strand at 1235.107 kb on + strand at 1235.107 kb on + strand at 1235.107 kb on + strand at 1235.107 kb on + strand at 1235.108 kb on - strand at 1235.108 kb on - strand at 1235.122 kb on + strand at 1235.122 kb on + strand at 1235.122 kb on + strand at 1235.123 kb on - strand at 1235.123 kb on - strand at 1235.159 kb on + strand at 1235.159 kb on + strand at 1235.159 kb on + strand at 1235.159 kb on + strand at 1235.160 kb on - strand at 1235.160 kb on - strand at 1235.175 kb on + strand at 1235.175 kb on + strand at 1235.176 kb on - strand at 1235.176 kb on - strand at 1235.176 kb on - strand at 1235.176 kb on - strand at 1235.176 kb on - strand at 1235.317 kb on + strand, within IAI47_06065 at 1235.317 kb on + strand, within IAI47_06065 at 1235.317 kb on + strand, within IAI47_06065 at 1235.317 kb on + strand, within IAI47_06065 at 1235.318 kb on - strand, within IAI47_06065 at 1235.376 kb on + strand, within IAI47_06065 at 1235.376 kb on + strand, within IAI47_06065 at 1235.377 kb on - strand, within IAI47_06065 at 1235.377 kb on - strand, within IAI47_06065 at 1235.377 kb on - strand, within IAI47_06065 at 1235.377 kb on - strand, within IAI47_06065 at 1235.377 kb on - strand, within IAI47_06065 at 1235.377 kb on - strand, within IAI47_06065 at 1235.436 kb on + strand, within IAI47_06065 at 1235.437 kb on - strand, within IAI47_06065 at 1235.453 kb on + strand, within IAI47_06065 at 1235.454 kb on - strand, within IAI47_06065 at 1235.584 kb on + strand, within IAI47_06065 at 1235.791 kb on - strand at 1235.791 kb on - strand at 1235.869 kb on - strand, within IAI47_06070 at 1236.128 kb on - strand, within IAI47_06070 at 1236.128 kb on - strand, within IAI47_06070 at 1236.252 kb on + strand, within IAI47_06070 at 1236.252 kb on + strand, within IAI47_06070 at 1236.253 kb on - strand, within IAI47_06070 at 1236.277 kb on - strand, within IAI47_06070 at 1236.332 kb on + strand, within IAI47_06070 at 1236.332 kb on + strand, within IAI47_06070 at 1236.352 kb on + strand, within IAI47_06070 at 1236.352 kb on + strand, within IAI47_06070 at 1236.352 kb on + strand, within IAI47_06070 at 1236.352 kb on + strand, within IAI47_06070 at 1236.352 kb on + strand, within IAI47_06070 at 1236.353 kb on - strand, within IAI47_06070 at 1236.433 kb on + strand at 1236.443 kb on + strand at 1236.443 kb on + strand at 1236.443 kb on + strand at 1236.443 kb on + strand at 1236.443 kb on + strand at 1236.444 kb on - strand at 1236.444 kb on - strand at 1236.444 kb on - strand at 1236.466 kb on + strand at 1236.466 kb on + strand at 1236.472 kb on + strand at 1236.473 kb on - strand at 1236.488 kb on + strand at 1236.488 kb on + strand at 1236.488 kb on + strand at 1236.488 kb on + strand at 1236.488 kb on + strand at 1236.488 kb on + strand at 1236.489 kb on - strand at 1236.489 kb on - strand at 1236.503 kb on - strand at 1236.503 kb on - strand at 1236.503 kb on - strand at 1236.503 kb on - strand at 1236.503 kb on - strand at 1236.615 kb on + strand, within IAI47_06075 at 1236.615 kb on + strand, within IAI47_06075 at 1236.615 kb on + strand, within IAI47_06075 at 1236.615 kb on + strand, within IAI47_06075 at 1236.630 kb on + strand, within IAI47_06075 at 1236.630 kb on + strand, within IAI47_06075 at 1236.631 kb on - strand, within IAI47_06075 at 1236.660 kb on + strand, within IAI47_06075 at 1236.660 kb on + strand, within IAI47_06075 at 1236.660 kb on + strand, within IAI47_06075 at 1236.660 kb on + strand, within IAI47_06075 at 1236.660 kb on + strand, within IAI47_06075 at 1236.660 kb on + strand, within IAI47_06075 at 1236.660 kb on + strand, within IAI47_06075 at 1236.661 kb on - strand, within IAI47_06075 at 1236.661 kb on - strand, within IAI47_06075 at 1236.661 kb on - strand, within IAI47_06075 at 1236.661 kb on - strand, within IAI47_06075 at 1236.661 kb on - strand, within IAI47_06075 at 1236.661 kb on - strand, within IAI47_06075 at 1236.661 kb on - strand, within IAI47_06075 at 1236.661 kb on - strand, within IAI47_06075 at 1236.661 kb on - strand, within IAI47_06075 at 1236.699 kb on + strand, within IAI47_06075 at 1236.700 kb on - strand, within IAI47_06075 at 1236.700 kb on - strand, within IAI47_06075 at 1236.700 kb on - strand, within IAI47_06075 at 1236.700 kb on - strand, within IAI47_06075 at 1236.803 kb on + strand, within IAI47_06075 at 1236.803 kb on + strand, within IAI47_06075 at 1236.803 kb on + strand, within IAI47_06075 at 1236.803 kb on + strand, within IAI47_06075 at 1236.803 kb on + strand, within IAI47_06075 at 1236.804 kb on - strand, within IAI47_06075 at 1236.889 kb on + strand, within IAI47_06075 at 1236.889 kb on + strand, within IAI47_06075 at 1236.889 kb on + strand, within IAI47_06075 at 1236.890 kb on - strand, within IAI47_06075 at 1236.890 kb on - strand, within IAI47_06075 at 1236.890 kb on - strand, within IAI47_06075 at 1236.903 kb on + strand, within IAI47_06075 at 1236.903 kb on + strand, within IAI47_06075 at 1236.903 kb on + strand, within IAI47_06075 at 1236.903 kb on + strand, within IAI47_06075 at 1236.903 kb on + strand, within IAI47_06075 at 1236.903 kb on + strand, within IAI47_06075 at 1236.903 kb on + strand, within IAI47_06075 at 1236.903 kb on + strand, within IAI47_06075 at 1236.904 kb on - strand, within IAI47_06075 at 1236.904 kb on - strand, within IAI47_06075 at 1236.904 kb on - strand, within IAI47_06075 at 1236.904 kb on - strand, within IAI47_06075 at 1236.904 kb on - strand, within IAI47_06075 at 1236.904 kb on - strand, within IAI47_06075 at 1236.904 kb on - strand, within IAI47_06075 at 1236.904 kb on - strand, within IAI47_06075 at 1236.904 kb on - strand, within IAI47_06075 at 1236.905 kb on + strand, within IAI47_06075 at 1236.905 kb on + strand, within IAI47_06075 at 1236.905 kb on + strand, within IAI47_06075 at 1236.924 kb on + strand, within IAI47_06075 at 1236.924 kb on + strand, within IAI47_06075 at 1237.117 kb on - strand, within IAI47_06075 at 1237.131 kb on - strand, within IAI47_06075 at 1237.131 kb on - strand, within IAI47_06075 at 1237.131 kb on - strand, within IAI47_06075 at 1237.131 kb on - strand, within IAI47_06075 at 1237.157 kb on + strand at 1237.274 kb on + strand, within IAI47_06080 at 1237.283 kb on + strand, within IAI47_06080 at 1237.283 kb on + strand, within IAI47_06080 at 1237.283 kb on + strand, within IAI47_06080 at 1237.283 kb on + strand, within IAI47_06080 at 1237.284 kb on - strand, within IAI47_06080 at 1237.284 kb on - strand, within IAI47_06080 at 1237.339 kb on + strand, within IAI47_06080 at 1237.339 kb on + strand, within IAI47_06080 at 1237.339 kb on + strand, within IAI47_06080 at 1237.348 kb on - strand, within IAI47_06080
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 1,234,808 - IAI47_06060 0.90 -0.2 1,234,861 + -3.0 1,234,861 + +0.8 1,234,862 - +0.5 1,234,862 - -1.2 1,234,862 - -0.3 1,234,884 + -1.5 1,234,884 + +0.1 1,234,884 + -0.8 1,234,918 + +0.1 1,234,918 + +0.5 1,234,918 + -1.8 1,234,918 + -1.9 1,234,918 + -1.2 1,234,919 - -0.1 1,234,919 - +1.0 1,234,919 - +1.2 1,234,919 - -0.6 1,234,927 - +1.4 1,234,927 - +1.0 1,234,927 - -0.2 1,234,933 - +2.5 1,234,933 - +0.6 1,234,933 - -1.2 1,234,933 - +0.5 1,234,933 - +1.2 1,234,934 + -0.2 1,234,934 + -0.2 1,234,934 + +0.3 1,234,934 + -0.7 1,234,935 - +0.1 1,234,935 - +1.5 1,234,935 - -0.4 1,234,935 - -0.3 1,234,935 - -0.5 1,234,935 - -0.7 1,234,935 - +0.6 1,234,935 - -0.9 1,234,966 + +1.1 1,234,967 - -0.7 1,234,982 + -0.0 1,234,982 + +1.0 1,234,982 + -2.1 1,234,982 + +0.4 1,234,988 + +0.1 1,234,988 + +0.1 1,234,988 + -0.3 1,234,988 + -0.7 1,234,989 - -1.0 1,234,989 - +0.2 1,235,044 + -0.7 1,235,044 + -0.0 1,235,045 - +0.3 1,235,052 + +0.7 1,235,104 + -1.1 1,235,104 + +1.2 1,235,105 - -0.8 1,235,107 + +2.3 1,235,107 + +2.1 1,235,107 + -0.1 1,235,107 + +0.7 1,235,108 - -0.1 1,235,108 - +0.2 1,235,122 + +1.1 1,235,122 + +1.7 1,235,122 + +0.5 1,235,123 - -0.2 1,235,123 - +1.0 1,235,159 + -0.6 1,235,159 + +1.2 1,235,159 + +2.1 1,235,159 + +1.5 1,235,160 - +0.4 1,235,160 - -0.1 1,235,175 + +1.1 1,235,175 + +0.6 1,235,176 - +0.4 1,235,176 - +1.5 1,235,176 - -0.0 1,235,176 - -0.1 1,235,176 - +0.2 1,235,317 + IAI47_06065 0.28 +2.4 1,235,317 + IAI47_06065 0.28 -1.3 1,235,317 + IAI47_06065 0.28 +0.2 1,235,317 + IAI47_06065 0.28 +0.1 1,235,318 - IAI47_06065 0.28 -0.1 1,235,376 + IAI47_06065 0.37 +1.3 1,235,376 + IAI47_06065 0.37 -0.1 1,235,377 - IAI47_06065 0.38 -0.2 1,235,377 - IAI47_06065 0.38 -0.7 1,235,377 - IAI47_06065 0.38 +0.4 1,235,377 - IAI47_06065 0.38 +0.5 1,235,377 - IAI47_06065 0.38 +0.2 1,235,377 - IAI47_06065 0.38 -1.0 1,235,436 + IAI47_06065 0.47 -0.3 1,235,437 - IAI47_06065 0.47 -0.6 1,235,453 + IAI47_06065 0.50 +1.4 1,235,454 - IAI47_06065 0.50 +0.1 1,235,584 + IAI47_06065 0.71 +0.2 1,235,791 - +1.0 1,235,791 - +0.4 1,235,869 - IAI47_06070 0.16 -0.2 1,236,128 - IAI47_06070 0.55 +0.1 1,236,128 - IAI47_06070 0.55 +1.5 1,236,252 + IAI47_06070 0.74 +1.7 1,236,252 + IAI47_06070 0.74 +1.7 1,236,253 - IAI47_06070 0.74 +1.0 1,236,277 - IAI47_06070 0.78 +0.8 1,236,332 + IAI47_06070 0.86 +0.5 1,236,332 + IAI47_06070 0.86 -0.8 1,236,352 + IAI47_06070 0.89 +1.7 1,236,352 + IAI47_06070 0.89 +4.0 1,236,352 + IAI47_06070 0.89 -0.1 1,236,352 + IAI47_06070 0.89 -0.9 1,236,352 + IAI47_06070 0.89 -0.4 1,236,353 - IAI47_06070 0.90 +0.4 1,236,433 + -0.1 1,236,443 + +0.6 1,236,443 + -0.4 1,236,443 + -1.1 1,236,443 + -2.6 1,236,443 + -0.6 1,236,444 - -0.6 1,236,444 - +1.0 1,236,444 - -0.1 1,236,466 + -1.5 1,236,466 + -1.1 1,236,472 + -1.9 1,236,473 - -0.0 1,236,488 + +2.5 1,236,488 + +0.0 1,236,488 + +1.2 1,236,488 + -0.7 1,236,488 + +1.1 1,236,488 + +0.4 1,236,489 - -0.3 1,236,489 - +0.2 1,236,503 - -1.1 1,236,503 - +0.3 1,236,503 - -1.0 1,236,503 - +0.9 1,236,503 - -0.2 1,236,615 + IAI47_06075 0.17 +0.2 1,236,615 + IAI47_06075 0.17 -0.2 1,236,615 + IAI47_06075 0.17 -1.0 1,236,615 + IAI47_06075 0.17 -0.5 1,236,630 + IAI47_06075 0.19 -0.6 1,236,630 + IAI47_06075 0.19 +0.4 1,236,631 - IAI47_06075 0.19 -0.4 1,236,660 + IAI47_06075 0.23 +0.4 1,236,660 + IAI47_06075 0.23 -0.6 1,236,660 + IAI47_06075 0.23 -0.2 1,236,660 + IAI47_06075 0.23 -1.4 1,236,660 + IAI47_06075 0.23 +0.1 1,236,660 + IAI47_06075 0.23 +1.8 1,236,660 + IAI47_06075 0.23 +2.3 1,236,661 - IAI47_06075 0.23 -0.6 1,236,661 - IAI47_06075 0.23 -0.8 1,236,661 - IAI47_06075 0.23 -1.4 1,236,661 - IAI47_06075 0.23 +1.1 1,236,661 - IAI47_06075 0.23 +1.1 1,236,661 - IAI47_06075 0.23 +1.1 1,236,661 - IAI47_06075 0.23 +1.5 1,236,661 - IAI47_06075 0.23 +0.5 1,236,661 - IAI47_06075 0.23 +1.2 1,236,699 + IAI47_06075 0.28 -0.7 1,236,700 - IAI47_06075 0.28 +2.9 1,236,700 - IAI47_06075 0.28 +1.0 1,236,700 - IAI47_06075 0.28 -1.2 1,236,700 - IAI47_06075 0.28 -0.2 1,236,803 + IAI47_06075 0.42 +0.4 1,236,803 + IAI47_06075 0.42 +0.6 1,236,803 + IAI47_06075 0.42 +0.1 1,236,803 + IAI47_06075 0.42 +2.2 1,236,803 + IAI47_06075 0.42 -0.5 1,236,804 - IAI47_06075 0.43 +1.2 1,236,889 + IAI47_06075 0.54 +1.0 1,236,889 + IAI47_06075 0.54 -0.6 1,236,889 + IAI47_06075 0.54 -0.3 1,236,890 - IAI47_06075 0.54 +1.1 1,236,890 - IAI47_06075 0.54 +1.5 1,236,890 - IAI47_06075 0.54 +0.4 1,236,903 + IAI47_06075 0.56 +1.5 1,236,903 + IAI47_06075 0.56 +1.5 1,236,903 + IAI47_06075 0.56 +0.8 1,236,903 + IAI47_06075 0.56 +1.7 1,236,903 + IAI47_06075 0.56 -0.8 1,236,903 + IAI47_06075 0.56 +1.0 1,236,903 + IAI47_06075 0.56 -0.5 1,236,903 + IAI47_06075 0.56 -1.0 1,236,904 - IAI47_06075 0.56 -1.0 1,236,904 - IAI47_06075 0.56 -0.3 1,236,904 - IAI47_06075 0.56 +1.2 1,236,904 - IAI47_06075 0.56 +1.4 1,236,904 - IAI47_06075 0.56 -0.1 1,236,904 - IAI47_06075 0.56 +1.7 1,236,904 - IAI47_06075 0.56 +0.7 1,236,904 - IAI47_06075 0.56 +0.2 1,236,904 - IAI47_06075 0.56 +2.0 1,236,905 + IAI47_06075 0.56 +0.7 1,236,905 + IAI47_06075 0.56 -1.8 1,236,905 + IAI47_06075 0.56 +0.2 1,236,924 + IAI47_06075 0.59 +0.8 1,236,924 + IAI47_06075 0.59 +1.7 1,237,117 - IAI47_06075 0.85 -0.9 1,237,131 - IAI47_06075 0.87 +2.3 1,237,131 - IAI47_06075 0.87 +0.3 1,237,131 - IAI47_06075 0.87 -0.4 1,237,131 - IAI47_06075 0.87 +1.9 1,237,157 + +0.7 1,237,274 + IAI47_06080 0.21 -0.1 1,237,283 + IAI47_06080 0.24 +1.7 1,237,283 + IAI47_06080 0.24 -0.8 1,237,283 + IAI47_06080 0.24 +0.8 1,237,283 + IAI47_06080 0.24 +0.4 1,237,284 - IAI47_06080 0.25 -0.9 1,237,284 - IAI47_06080 0.25 +1.7 1,237,339 + IAI47_06080 0.48 +0.4 1,237,339 + IAI47_06080 0.48 -0.9 1,237,339 + IAI47_06080 0.48 -0.2 1,237,348 - IAI47_06080 0.52 -0.7
Or see this region's nucleotide sequence