Strain Fitness in Pantoea sp. MT58 around IAI47_03740

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03730 and IAI47_03740 are separated by 314 nucleotidesIAI47_03740 and IAI47_03745 are separated by 170 nucleotidesIAI47_03745 and IAI47_03750 are separated by 46 nucleotides IAI47_03730: IAI47_03730 - 5-formyltetrahydrofolate cyclo-ligase, at 778,878 to 779,471 _03730 IAI47_03740: IAI47_03740 - cell division protein ZapA, at 779,786 to 780,115 _03740 IAI47_03745: IAI47_03745 - YecA family protein, at 780,286 to 780,864 _03745 IAI47_03750: IAI47_03750 - Xaa-Pro aminopeptidase, at 780,911 to 782,233 _03750 Position (kb) 779 780 781Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 778.805 kb on + strandat 778.805 kb on + strandat 778.805 kb on + strandat 778.805 kb on + strandat 778.806 kb on - strandat 778.806 kb on - strandat 778.879 kb on + strandat 778.879 kb on + strandat 778.880 kb on - strandat 778.911 kb on + strandat 778.912 kb on - strandat 778.912 kb on - strandat 778.926 kb on + strandat 778.926 kb on + strandat 778.926 kb on + strandat 778.926 kb on + strandat 778.926 kb on + strandat 778.926 kb on + strandat 778.926 kb on + strandat 778.926 kb on + strandat 778.926 kb on + strandat 778.927 kb on - strandat 778.927 kb on - strandat 778.927 kb on - strandat 778.927 kb on - strandat 778.927 kb on - strandat 779.029 kb on + strand, within IAI47_03730at 779.029 kb on + strand, within IAI47_03730at 779.029 kb on + strand, within IAI47_03730at 779.030 kb on - strand, within IAI47_03730at 779.030 kb on - strand, within IAI47_03730at 779.151 kb on - strand, within IAI47_03730at 779.151 kb on - strand, within IAI47_03730at 779.151 kb on - strand, within IAI47_03730at 779.151 kb on - strand, within IAI47_03730at 779.154 kb on + strand, within IAI47_03730at 779.154 kb on + strand, within IAI47_03730at 779.154 kb on + strand, within IAI47_03730at 779.154 kb on + strand, within IAI47_03730at 779.154 kb on + strand, within IAI47_03730at 779.155 kb on - strand, within IAI47_03730at 779.155 kb on - strand, within IAI47_03730at 779.155 kb on - strand, within IAI47_03730at 779.155 kb on - strand, within IAI47_03730at 779.155 kb on - strand, within IAI47_03730at 779.160 kb on - strand, within IAI47_03730at 779.160 kb on - strand, within IAI47_03730at 779.160 kb on - strand, within IAI47_03730at 779.160 kb on - strand, within IAI47_03730at 779.165 kb on + strand, within IAI47_03730at 779.165 kb on + strand, within IAI47_03730at 779.166 kb on - strand, within IAI47_03730at 779.166 kb on - strand, within IAI47_03730at 779.166 kb on - strand, within IAI47_03730at 779.189 kb on - strand, within IAI47_03730at 779.239 kb on + strand, within IAI47_03730at 779.240 kb on - strand, within IAI47_03730at 779.240 kb on - strand, within IAI47_03730at 779.240 kb on - strand, within IAI47_03730at 779.286 kb on - strand, within IAI47_03730at 779.286 kb on - strand, within IAI47_03730at 779.336 kb on + strand, within IAI47_03730at 779.336 kb on + strand, within IAI47_03730at 779.347 kb on + strand, within IAI47_03730at 779.347 kb on + strand, within IAI47_03730at 779.347 kb on + strand, within IAI47_03730at 779.347 kb on + strand, within IAI47_03730at 779.348 kb on - strand, within IAI47_03730at 779.348 kb on - strand, within IAI47_03730at 779.351 kb on + strand, within IAI47_03730at 779.351 kb on + strand, within IAI47_03730at 779.352 kb on - strand, within IAI47_03730at 779.352 kb on - strand, within IAI47_03730at 779.352 kb on - strand, within IAI47_03730at 779.424 kb on + strandat 779.425 kb on - strandat 779.425 kb on - strandat 779.451 kb on + strandat 779.451 kb on + strandat 779.451 kb on + strandat 779.452 kb on - strandat 779.452 kb on - strandat 779.452 kb on - strandat 779.452 kb on - strandat 779.459 kb on + strandat 779.502 kb on + strandat 779.503 kb on - strandat 779.503 kb on - strandat 779.503 kb on - strandat 779.521 kb on + strandat 779.522 kb on - strandat 779.522 kb on - strandat 779.522 kb on - strandat 779.522 kb on - strandat 779.523 kb on + strandat 779.523 kb on + strandat 779.523 kb on + strandat 779.523 kb on + strandat 779.523 kb on + strandat 779.523 kb on + strandat 779.523 kb on + strandat 779.523 kb on + strandat 779.523 kb on + strandat 779.524 kb on - strandat 779.524 kb on - strandat 779.524 kb on - strandat 779.524 kb on - strandat 779.524 kb on - strandat 779.524 kb on - strandat 779.524 kb on - strandat 779.524 kb on - strandat 779.585 kb on + strandat 779.593 kb on - strandat 779.593 kb on - strandat 779.631 kb on + strandat 779.632 kb on - strandat 779.674 kb on - strandat 779.765 kb on + strandat 779.765 kb on + strandat 779.766 kb on - strandat 779.766 kb on - strandat 779.766 kb on - strandat 779.766 kb on - strandat 779.766 kb on - strandat 779.766 kb on - strandat 779.766 kb on - strandat 779.768 kb on + strandat 779.768 kb on + strandat 779.769 kb on - strandat 779.769 kb on - strandat 779.770 kb on + strandat 779.770 kb on + strandat 779.771 kb on - strandat 779.771 kb on - strandat 779.771 kb on - strandat 779.771 kb on - strandat 779.835 kb on - strand, within IAI47_03740at 779.835 kb on - strand, within IAI47_03740at 779.835 kb on - strand, within IAI47_03740at 779.835 kb on - strand, within IAI47_03740at 779.835 kb on - strand, within IAI47_03740at 779.835 kb on - strand, within IAI47_03740at 779.863 kb on + strand, within IAI47_03740at 779.864 kb on - strand, within IAI47_03740at 779.864 kb on - strand, within IAI47_03740at 779.869 kb on + strand, within IAI47_03740at 779.870 kb on - strand, within IAI47_03740at 779.881 kb on + strand, within IAI47_03740at 779.882 kb on - strand, within IAI47_03740at 779.882 kb on - strand, within IAI47_03740at 779.884 kb on + strand, within IAI47_03740at 779.884 kb on + strand, within IAI47_03740at 779.884 kb on + strand, within IAI47_03740at 779.884 kb on + strand, within IAI47_03740at 779.884 kb on + strand, within IAI47_03740at 779.884 kb on + strand, within IAI47_03740at 779.884 kb on + strand, within IAI47_03740at 779.885 kb on - strand, within IAI47_03740at 779.885 kb on - strand, within IAI47_03740at 779.885 kb on - strand, within IAI47_03740at 779.893 kb on - strand, within IAI47_03740at 779.968 kb on + strand, within IAI47_03740at 779.968 kb on + strand, within IAI47_03740at 779.968 kb on + strand, within IAI47_03740at 779.969 kb on - strand, within IAI47_03740at 779.980 kb on + strand, within IAI47_03740at 779.980 kb on + strand, within IAI47_03740at 779.980 kb on + strand, within IAI47_03740at 779.980 kb on + strand, within IAI47_03740at 779.980 kb on + strand, within IAI47_03740at 779.994 kb on - strand, within IAI47_03740at 780.031 kb on + strand, within IAI47_03740at 780.031 kb on + strand, within IAI47_03740at 780.031 kb on + strand, within IAI47_03740at 780.032 kb on - strand, within IAI47_03740at 780.093 kb on - strandat 780.098 kb on + strandat 780.134 kb on + strandat 780.134 kb on + strandat 780.154 kb on + strandat 780.154 kb on + strandat 780.154 kb on + strandat 780.155 kb on - strandat 780.184 kb on + strandat 780.184 kb on + strandat 780.184 kb on + strandat 780.184 kb on + strandat 780.184 kb on + strandat 780.184 kb on + strandat 780.184 kb on + strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.185 kb on - strandat 780.186 kb on + strandat 780.186 kb on + strandat 780.186 kb on + strandat 780.186 kb on + strandat 780.186 kb on + strandat 780.187 kb on - strandat 780.187 kb on - strandat 780.187 kb on - strandat 780.187 kb on - strandat 780.188 kb on + strandat 780.188 kb on + strandat 780.188 kb on + strandat 780.188 kb on + strandat 780.188 kb on + strandat 780.189 kb on - strandat 780.189 kb on - strandat 780.189 kb on - strandat 780.189 kb on - strandat 780.189 kb on - strandat 780.189 kb on - strandat 780.189 kb on - strandat 780.189 kb on - strandat 780.201 kb on + strandat 780.201 kb on + strandat 780.202 kb on - strandat 780.202 kb on - strandat 780.202 kb on - strandat 780.206 kb on + strandat 780.206 kb on + strandat 780.207 kb on - strandat 780.207 kb on - strandat 780.207 kb on - strandat 780.238 kb on + strandat 780.239 kb on - strandat 780.239 kb on - strandat 780.244 kb on + strandat 780.244 kb on + strandat 780.245 kb on - strandat 780.249 kb on + strandat 780.249 kb on + strandat 780.249 kb on + strandat 780.250 kb on - strandat 780.260 kb on + strandat 780.260 kb on + strandat 780.261 kb on - strandat 780.285 kb on + strandat 780.285 kb on + strandat 780.285 kb on + strandat 780.285 kb on + strandat 780.286 kb on - strandat 780.286 kb on - strandat 780.293 kb on + strandat 780.293 kb on + strandat 780.293 kb on + strandat 780.294 kb on - strandat 780.294 kb on - strandat 780.294 kb on - strandat 780.313 kb on + strandat 780.313 kb on + strandat 780.354 kb on + strand, within IAI47_03745at 780.354 kb on + strand, within IAI47_03745at 780.354 kb on + strand, within IAI47_03745at 780.354 kb on + strand, within IAI47_03745at 780.355 kb on - strand, within IAI47_03745at 780.383 kb on + strand, within IAI47_03745at 780.434 kb on + strand, within IAI47_03745at 780.434 kb on + strand, within IAI47_03745at 780.516 kb on + strand, within IAI47_03745at 780.516 kb on + strand, within IAI47_03745at 780.578 kb on + strand, within IAI47_03745at 780.578 kb on + strand, within IAI47_03745at 780.578 kb on + strand, within IAI47_03745at 780.578 kb on + strand, within IAI47_03745at 780.579 kb on - strand, within IAI47_03745at 780.639 kb on - strand, within IAI47_03745at 780.639 kb on - strand, within IAI47_03745at 780.648 kb on + strand, within IAI47_03745at 780.648 kb on + strand, within IAI47_03745at 780.649 kb on - strand, within IAI47_03745at 780.649 kb on - strand, within IAI47_03745at 780.657 kb on + strand, within IAI47_03745at 780.775 kb on + strand, within IAI47_03745at 780.775 kb on + strand, within IAI47_03745at 780.775 kb on + strand, within IAI47_03745at 780.775 kb on + strand, within IAI47_03745at 780.775 kb on + strand, within IAI47_03745at 780.776 kb on - strand, within IAI47_03745at 780.776 kb on - strand, within IAI47_03745at 780.776 kb on - strand, within IAI47_03745at 780.776 kb on - strand, within IAI47_03745at 780.776 kb on - strand, within IAI47_03745at 780.807 kb on + strandat 780.807 kb on + strandat 780.807 kb on + strandat 780.807 kb on + strandat 780.858 kb on - strandat 780.858 kb on - strandat 780.858 kb on - strandat 780.858 kb on - strandat 780.858 kb on - strandat 780.862 kb on + strandat 780.862 kb on + strandat 780.862 kb on + strandat 780.862 kb on + strandat 780.863 kb on - strandat 780.863 kb on - strandat 780.895 kb on + strandat 780.929 kb on + strandat 780.929 kb on + strandat 781.028 kb on + strandat 781.072 kb on + strand, within IAI47_03750

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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778,805 + +0.7
778,805 + +1.0
778,805 + -0.1
778,805 + -1.1
778,806 - +0.7
778,806 - +0.1
778,879 + -0.6
778,879 + -1.4
778,880 - -0.8
778,911 + +0.6
778,912 - +0.5
778,912 - +1.3
778,926 + -1.2
778,926 + +0.5
778,926 + +1.0
778,926 + +2.2
778,926 + -1.5
778,926 + -1.0
778,926 + -0.6
778,926 + +0.1
778,926 + +1.4
778,927 - +0.3
778,927 - +0.3
778,927 - +1.2
778,927 - -0.2
778,927 - -1.7
779,029 + IAI47_03730 0.25 -0.6
779,029 + IAI47_03730 0.25 -1.8
779,029 + IAI47_03730 0.25 -0.7
779,030 - IAI47_03730 0.26 -0.2
779,030 - IAI47_03730 0.26 +0.3
779,151 - IAI47_03730 0.46 +1.8
779,151 - IAI47_03730 0.46 +1.4
779,151 - IAI47_03730 0.46 -0.3
779,151 - IAI47_03730 0.46 -0.1
779,154 + IAI47_03730 0.46 -0.0
779,154 + IAI47_03730 0.46 -0.2
779,154 + IAI47_03730 0.46 -1.1
779,154 + IAI47_03730 0.46 -0.7
779,154 + IAI47_03730 0.46 +3.1
779,155 - IAI47_03730 0.47 +0.7
779,155 - IAI47_03730 0.47 +1.6
779,155 - IAI47_03730 0.47 +1.6
779,155 - IAI47_03730 0.47 -0.5
779,155 - IAI47_03730 0.47 -0.3
779,160 - IAI47_03730 0.47 +0.1
779,160 - IAI47_03730 0.47 -0.5
779,160 - IAI47_03730 0.47 -1.2
779,160 - IAI47_03730 0.47 -0.8
779,165 + IAI47_03730 0.48 -0.0
779,165 + IAI47_03730 0.48 +1.6
779,166 - IAI47_03730 0.48 -0.7
779,166 - IAI47_03730 0.48 -0.8
779,166 - IAI47_03730 0.48 +0.1
779,189 - IAI47_03730 0.52 -0.8
779,239 + IAI47_03730 0.61 +1.3
779,240 - IAI47_03730 0.61 +0.6
779,240 - IAI47_03730 0.61 -0.7
779,240 - IAI47_03730 0.61 -0.6
779,286 - IAI47_03730 0.69 -0.4
779,286 - IAI47_03730 0.69 -0.2
779,336 + IAI47_03730 0.77 -0.7
779,336 + IAI47_03730 0.77 +0.4
779,347 + IAI47_03730 0.79 +1.2
779,347 + IAI47_03730 0.79 +0.6
779,347 + IAI47_03730 0.79 +1.0
779,347 + IAI47_03730 0.79 +0.1
779,348 - IAI47_03730 0.79 +0.1
779,348 - IAI47_03730 0.79 +1.2
779,351 + IAI47_03730 0.80 -0.0
779,351 + IAI47_03730 0.80 +0.4
779,352 - IAI47_03730 0.80 +1.3
779,352 - IAI47_03730 0.80 -0.2
779,352 - IAI47_03730 0.80 +1.5
779,424 + +1.3
779,425 - -1.0
779,425 - -0.1
779,451 + +0.0
779,451 + +1.0
779,451 + -0.6
779,452 - +2.3
779,452 - +1.0
779,452 - +0.6
779,452 - -0.5
779,459 + +0.3
779,502 + +1.0
779,503 - +1.5
779,503 - +1.5
779,503 - +0.7
779,521 + +2.6
779,522 - -1.2
779,522 - +0.3
779,522 - +2.8
779,522 - -0.3
779,523 + +0.6
779,523 + -0.0
779,523 + +0.6
779,523 + +0.4
779,523 + -0.5
779,523 + +1.7
779,523 + +1.2
779,523 + +0.9
779,523 + +0.6
779,524 - +1.3
779,524 - +1.3
779,524 - -0.8
779,524 - +0.2
779,524 - -0.9
779,524 - +1.1
779,524 - +0.5
779,524 - -0.6
779,585 + -1.4
779,593 - -0.2
779,593 - +0.2
779,631 + +0.5
779,632 - -0.2
779,674 - -0.1
779,765 + +1.3
779,765 + -0.1
779,766 - -1.6
779,766 - +1.0
779,766 - +0.4
779,766 - -0.8
779,766 - -0.2
779,766 - -0.3
779,766 - +0.8
779,768 + -0.2
779,768 + +1.6
779,769 - +2.0
779,769 - +1.4
779,770 + -1.3
779,770 + +0.6
779,771 - -0.1
779,771 - +0.6
779,771 - +0.3
779,771 - -0.3
779,835 - IAI47_03740 0.15 +2.0
779,835 - IAI47_03740 0.15 -0.2
779,835 - IAI47_03740 0.15 -0.9
779,835 - IAI47_03740 0.15 -1.3
779,835 - IAI47_03740 0.15 +0.3
779,835 - IAI47_03740 0.15 +0.1
779,863 + IAI47_03740 0.23 -1.2
779,864 - IAI47_03740 0.24 +0.5
779,864 - IAI47_03740 0.24 +0.1
779,869 + IAI47_03740 0.25 -0.2
779,870 - IAI47_03740 0.25 +0.1
779,881 + IAI47_03740 0.29 -2.0
779,882 - IAI47_03740 0.29 +1.3
779,882 - IAI47_03740 0.29 -0.5
779,884 + IAI47_03740 0.30 +0.4
779,884 + IAI47_03740 0.30 +1.3
779,884 + IAI47_03740 0.30 -1.2
779,884 + IAI47_03740 0.30 +0.2
779,884 + IAI47_03740 0.30 +0.0
779,884 + IAI47_03740 0.30 +0.8
779,884 + IAI47_03740 0.30 +0.3
779,885 - IAI47_03740 0.30 +0.5
779,885 - IAI47_03740 0.30 -1.4
779,885 - IAI47_03740 0.30 -0.1
779,893 - IAI47_03740 0.32 -1.6
779,968 + IAI47_03740 0.55 -0.8
779,968 + IAI47_03740 0.55 +0.3
779,968 + IAI47_03740 0.55 -1.9
779,969 - IAI47_03740 0.55 -2.1
779,980 + IAI47_03740 0.59 -0.5
779,980 + IAI47_03740 0.59 -1.3
779,980 + IAI47_03740 0.59 +0.3
779,980 + IAI47_03740 0.59 -0.0
779,980 + IAI47_03740 0.59 -0.2
779,994 - IAI47_03740 0.63 -0.0
780,031 + IAI47_03740 0.74 -0.4
780,031 + IAI47_03740 0.74 +1.0
780,031 + IAI47_03740 0.74 -1.4
780,032 - IAI47_03740 0.75 -0.1
780,093 - +0.8
780,098 + +0.6
780,134 + -1.2
780,134 + +2.3
780,154 + -0.8
780,154 + -0.5
780,154 + +0.8
780,155 - -1.3
780,184 + -0.1
780,184 + +1.6
780,184 + -1.7
780,184 + -1.5
780,184 + -2.4
780,184 + -0.5
780,184 + +1.0
780,185 - +1.4
780,185 - -1.2
780,185 - +0.0
780,185 - +1.7
780,185 - -1.0
780,185 - +0.6
780,185 - +0.7
780,185 - +1.3
780,185 - -1.1
780,185 - -0.7
780,185 - +1.1
780,185 - -2.0
780,185 - -1.4
780,185 - +0.1
780,185 - +1.1
780,186 + +0.1
780,186 + -1.6
780,186 + -0.4
780,186 + +4.4
780,186 + -1.4
780,187 - -0.5
780,187 - -1.0
780,187 - +0.3
780,187 - +0.4
780,188 + +1.5
780,188 + -2.6
780,188 + -0.0
780,188 + +0.6
780,188 + -1.1
780,189 - +0.6
780,189 - -0.0
780,189 - +0.4
780,189 - +0.3
780,189 - -0.3
780,189 - +0.6
780,189 - +1.3
780,189 - -0.4
780,201 + +0.0
780,201 + -2.1
780,202 - -0.8
780,202 - -0.6
780,202 - +2.2
780,206 + +0.3
780,206 + +0.5
780,207 - +1.5
780,207 - +1.1
780,207 - -2.1
780,238 + -2.0
780,239 - -0.8
780,239 - +0.2
780,244 + +0.3
780,244 + +0.6
780,245 - +0.3
780,249 + -0.5
780,249 + -0.5
780,249 + -0.5
780,250 - -0.5
780,260 + +1.3
780,260 + +0.3
780,261 - +0.5
780,285 + +0.6
780,285 + +0.3
780,285 + +1.0
780,285 + -0.8
780,286 - +0.8
780,286 - -0.6
780,293 + +1.1
780,293 + +2.6
780,293 + -0.2
780,294 - +1.3
780,294 - -0.1
780,294 - -0.3
780,313 + -0.5
780,313 + +1.4
780,354 + IAI47_03745 0.12 -1.8
780,354 + IAI47_03745 0.12 -2.0
780,354 + IAI47_03745 0.12 -0.9
780,354 + IAI47_03745 0.12 +0.3
780,355 - IAI47_03745 0.12 -0.2
780,383 + IAI47_03745 0.17 +0.9
780,434 + IAI47_03745 0.26 -0.2
780,434 + IAI47_03745 0.26 -0.4
780,516 + IAI47_03745 0.40 +0.3
780,516 + IAI47_03745 0.40 -2.6
780,578 + IAI47_03745 0.50 -1.7
780,578 + IAI47_03745 0.50 +1.1
780,578 + IAI47_03745 0.50 -2.0
780,578 + IAI47_03745 0.50 -1.7
780,579 - IAI47_03745 0.51 +1.9
780,639 - IAI47_03745 0.61 +1.3
780,639 - IAI47_03745 0.61 +0.1
780,648 + IAI47_03745 0.63 +0.2
780,648 + IAI47_03745 0.63 -0.1
780,649 - IAI47_03745 0.63 -1.7
780,649 - IAI47_03745 0.63 +4.0
780,657 + IAI47_03745 0.64 +0.2
780,775 + IAI47_03745 0.84 -0.5
780,775 + IAI47_03745 0.84 +0.6
780,775 + IAI47_03745 0.84 +0.3
780,775 + IAI47_03745 0.84 +0.8
780,775 + IAI47_03745 0.84 -0.7
780,776 - IAI47_03745 0.85 +1.3
780,776 - IAI47_03745 0.85 +2.2
780,776 - IAI47_03745 0.85 +3.6
780,776 - IAI47_03745 0.85 +0.4
780,776 - IAI47_03745 0.85 -0.6
780,807 + +0.5
780,807 + +2.3
780,807 + +0.9
780,807 + -1.2
780,858 - -0.7
780,858 - -0.9
780,858 - +1.7
780,858 - -0.1
780,858 - -0.5
780,862 + -0.0
780,862 + -0.7
780,862 + +1.6
780,862 + +0.6
780,863 - +1.8
780,863 - +0.8
780,895 + -0.2
780,929 + +0.2
780,929 + -0.5
781,028 + +1.1
781,072 + IAI47_03750 0.12 +0.7

Or see this region's nucleotide sequence