Strain Fitness in Pantoea sp. MT58 around IAI47_05535

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,163,667	+		IAI47_05530	0.48	-1.3
1,163,667	+		IAI47_05530	0.48	-0.3
1,163,668	-		IAI47_05530	0.48	-1.4
1,163,668	-		IAI47_05530	0.48	-0.4
1,163,708	+		IAI47_05530	0.51	-0.3
1,163,708	+		IAI47_05530	0.51	-1.3
1,163,708	+		IAI47_05530	0.51	+0.8
1,163,708	+		IAI47_05530	0.51	-2.2
1,163,708	+		IAI47_05530	0.51	-3.3
1,163,708	+		IAI47_05530	0.51	-0.8
1,163,708	+		IAI47_05530	0.51	+1.3
1,163,708	+		IAI47_05530	0.51	+1.0
1,163,708	+		IAI47_05530	0.51	+0.9
1,163,709	-		IAI47_05530	0.52	-0.3
1,163,709	-		IAI47_05530	0.52	-0.5
1,163,709	-		IAI47_05530	0.52	+0.5
1,163,709	-		IAI47_05530	0.52	-2.3
1,163,709	-		IAI47_05530	0.52	-0.6
1,163,709	-		IAI47_05530	0.52	+0.1
1,163,709	-		IAI47_05530	0.52	-0.4
1,163,709	-		IAI47_05530	0.52	+0.0
1,163,709	-		IAI47_05530	0.52	-1.3
1,163,730	+		IAI47_05530	0.53	+0.5
1,163,731	-		IAI47_05530	0.53	+0.3
1,163,731	-		IAI47_05530	0.53	-0.8
1,163,731	-		IAI47_05530	0.53	-0.7
1,163,731	-		IAI47_05530	0.53	+1.1
1,163,731	-		IAI47_05530	0.53	+1.0
1,163,731	-		IAI47_05530	0.53	-0.4
1,163,731	-		IAI47_05530	0.53	-1.7
1,163,731	-		IAI47_05530	0.53	-0.1
1,163,731	-		IAI47_05530	0.53	+1.5
1,163,732	+		IAI47_05530	0.53	+1.5
1,163,732	+		IAI47_05530	0.53	+2.0
1,163,732	+		IAI47_05530	0.53	-1.9
1,163,732	+		IAI47_05530	0.53	+2.2
1,163,732	+		IAI47_05530	0.53	+0.2
1,163,732	+		IAI47_05530	0.53	+0.8
1,163,732	+		IAI47_05530	0.53	-0.9
1,163,732	+		IAI47_05530	0.53	-0.9
1,163,732	+		IAI47_05530	0.53	+1.4
1,163,732	+		IAI47_05530	0.53	+0.1
1,163,732	+		IAI47_05530	0.53	+0.7
1,163,732	+		IAI47_05530	0.53	-0.6
1,163,732	+		IAI47_05530	0.53	-1.6
1,163,733	-		IAI47_05530	0.54	-0.4
1,163,733	-		IAI47_05530	0.54	+0.6
1,163,733	-		IAI47_05530	0.54	-0.4
1,163,733	-		IAI47_05530	0.54	-1.5
1,163,745	+		IAI47_05530	0.55	+0.2
1,163,745	+		IAI47_05530	0.55	-0.7
1,163,745	+		IAI47_05530	0.55	-0.3
1,163,746	-		IAI47_05530	0.55	-0.7
1,163,746	-		IAI47_05530	0.55	-1.3
1,163,746	-		IAI47_05530	0.55	-1.5
1,163,746	-		IAI47_05530	0.55	-0.8
1,163,786	+		IAI47_05530	0.58	-0.3
1,163,786	+		IAI47_05530	0.58	+0.6
1,163,786	+		IAI47_05530	0.58	+0.2
1,163,786	+		IAI47_05530	0.58	+1.6
1,163,786	+		IAI47_05530	0.58	+0.8
1,163,786	+		IAI47_05530	0.58	-0.8
1,163,786	+		IAI47_05530	0.58	+1.5
1,163,786	+		IAI47_05530	0.58	-0.1
1,163,786	+		IAI47_05530	0.58	-0.1
1,163,786	+		IAI47_05530	0.58	-1.9
1,163,786	+		IAI47_05530	0.58	-0.5
1,163,787	-		IAI47_05530	0.58	-1.1
1,163,787	-		IAI47_05530	0.58	-0.6
1,163,787	-		IAI47_05530	0.58	+1.2
1,163,818	-		IAI47_05530	0.61	-1.3
1,163,818	-		IAI47_05530	0.61	-1.4
1,163,818	-		IAI47_05530	0.61	+0.8
1,163,823	+		IAI47_05530	0.61	+0.5
1,163,823	+		IAI47_05530	0.61	+2.8
1,163,824	-		IAI47_05530	0.61	+1.4
1,163,825	+		IAI47_05530	0.61	+0.3
1,163,825	+		IAI47_05530	0.61	-0.7
1,163,825	+		IAI47_05530	0.61	+1.2
1,163,825	+		IAI47_05530	0.61	-1.5
1,163,825	+		IAI47_05530	0.61	-0.0
1,163,826	-		IAI47_05530	0.61	+1.2
1,163,826	-		IAI47_05530	0.61	+0.7
1,163,855	-		IAI47_05530	0.64	-0.4
1,163,919	+		IAI47_05530	0.69	+2.7
1,163,920	-		IAI47_05530	0.69	-0.1
1,163,968	-		IAI47_05530	0.73	-0.1
1,163,985	+		IAI47_05530	0.75	-1.3
1,163,986	-		IAI47_05530	0.75	-0.2
1,163,986	-		IAI47_05530	0.75	+0.6
1,163,986	-		IAI47_05530	0.75	+0.8
1,164,004	+		IAI47_05530	0.76	+0.4
1,164,004	+		IAI47_05530	0.76	+2.1
1,164,004	+		IAI47_05530	0.76	+0.9
1,164,004	+		IAI47_05530	0.76	-0.6
1,164,004	+		IAI47_05530	0.76	-0.1
1,164,004	+		IAI47_05530	0.76	-0.2
1,164,004	+		IAI47_05530	0.76	-0.2
1,164,004	+		IAI47_05530	0.76	+0.1
1,164,005	-		IAI47_05530	0.76	+0.3
1,164,005	-		IAI47_05530	0.76	+0.7
1,164,005	-		IAI47_05530	0.76	+0.4
1,164,005	-		IAI47_05530	0.76	+1.4
1,164,005	-		IAI47_05530	0.76	-0.1
1,164,005	-		IAI47_05530	0.76	-0.5
1,164,005	-		IAI47_05530	0.76	-2.2
1,164,005	-		IAI47_05530	0.76	-0.7
1,164,033	+		IAI47_05530	0.79	-1.1
1,164,033	+		IAI47_05530	0.79	-1.5
1,164,033	+		IAI47_05530	0.79	+1.5
1,164,034	-		IAI47_05530	0.79	-0.1
1,164,077	+		IAI47_05530	0.82	-0.6
1,164,077	+		IAI47_05530	0.82	+0.3
1,164,077	+		IAI47_05530	0.82	+1.6
1,164,077	+		IAI47_05530	0.82	+0.5
1,164,077	+		IAI47_05530	0.82	-0.8
1,164,078	-		IAI47_05530	0.83	-0.9
1,164,078	-		IAI47_05530	0.83	+0.5
1,164,078	-		IAI47_05530	0.83	+0.7
1,164,078	-		IAI47_05530	0.83	-2.7
1,164,178	+				+0.3
1,164,178	+				-0.1
1,164,178	+				-0.8
1,164,178	+				+1.5
1,164,179	-				-0.1
1,164,179	-				+1.5
1,164,179	-				-0.9
1,164,179	-				-0.1
1,164,179	-				+0.1
1,164,179	-				-0.3
1,164,184	+				-2.1
1,164,184	+				-1.7
1,164,184	+				-0.4
1,164,184	+				+0.1
1,164,184	+				+0.9
1,164,184	+				+1.0
1,164,184	+				+0.3
1,164,184	+				-0.7
1,164,184	+				-0.4
1,164,184	+				-0.3
1,164,185	-				-0.5
1,164,185	-				+1.1
1,164,185	-				-0.2
1,164,185	-				-0.9
1,164,185	-				+0.4
1,164,185	-				+0.2
1,164,185	-				+0.3
1,164,185	-				-0.3
1,164,185	-				-0.5
1,164,185	-				+1.6
1,164,185	-				-0.9
1,164,186	+				+0.2
1,164,186	+				-0.7
1,164,186	+				+0.6
1,164,186	+				-1.2
1,164,186	+				+0.5
1,164,186	+				+0.9
1,164,186	+				+0.7
1,164,186	+				-0.7
1,164,186	+				+1.2
1,164,187	-				-0.0
1,164,187	-				-0.4
1,164,187	-				+1.0
1,164,187	-				+0.2
1,164,187	-				-1.9
1,164,192	-				-0.7
1,164,210	+				-1.7
1,164,277	-				-0.2
1,164,285	+				-0.4
1,164,285	+				-2.4
1,164,285	+				+0.3
1,164,285	+				-1.7
1,164,285	+				-0.1
1,164,285	+				+0.0
1,164,285	+				-0.4
1,164,286	-				-1.1
1,164,286	-				+0.1
1,164,286	-				-0.9
1,164,286	-				+0.8
1,164,286	-				+1.3
1,164,286	-				+0.7
1,164,286	-				+0.5
1,164,286	-				+1.3
1,164,286	-				-0.1
1,164,286	-				+1.3
1,164,286	-				-0.7
1,164,286	-				-0.9
1,164,286	-				+0.6
1,164,312	+				+0.8
1,164,324	+				+2.3
1,164,329	+				-1.1
1,164,330	-				-0.7
1,164,330	-				-0.2
1,164,333	+				-0.9
1,164,334	-				-1.8
1,164,345	+				-0.2
1,164,368	+				+0.6
1,164,369	-				+0.4
1,164,369	-				-0.1
1,164,370	+				-0.5
1,164,370	+				-0.2
1,164,370	+				+0.4
1,164,370	+				+0.2
1,164,370	+				-0.6
1,164,370	+				-0.1
1,164,371	-				+0.6
1,164,371	-				+0.5
1,164,371	-				-1.7
1,164,389	+				-0.2
1,164,390	-				-0.1
1,164,453	+				-0.2
1,164,453	+				+0.2
1,164,453	+				-1.1
1,164,453	+				+0.0
1,164,454	-				-0.7
1,164,457	+				+1.2
1,164,457	+				+0.9
1,164,458	-				+0.9
1,164,471	+				-3.1
1,164,482	+				-0.8
1,164,483	-				+0.3
1,164,508	+				+1.3
1,164,525	-				+1.3
1,164,525	-				+0.4
1,164,525	-				-2.1
1,164,529	+				+1.1
1,164,529	+				+0.5
1,164,530	-				-1.1
1,164,530	-				-0.7
1,164,530	-				-2.4
1,164,534	+				-0.4
1,164,535	-				+0.7
1,164,535	-				+0.5
1,164,565	+				+0.8
1,164,565	+				+2.1
1,164,565	+				-1.0
1,164,565	+				+1.0
1,164,565	+				-0.3
1,164,566	-				+0.6
1,164,566	-				+0.7
1,164,566	-				-0.2
1,164,566	-				-1.5
1,164,566	-				+0.4
1,164,569	-				-1.3
1,164,569	-				+1.9
1,164,582	+				-2.2
1,164,582	+				+1.1
1,164,582	+				-0.5
1,164,606	+				+0.3
1,164,607	-				+0.1
1,164,607	-				-1.1
1,164,613	+				+0.5
1,164,614	-				+1.1
1,164,748	+				+1.5
1,164,748	+				-1.9
1,164,748	+				-1.6
1,164,748	+				-0.7
1,164,749	-				-0.1
1,164,751	-				-0.7
1,164,796	+		IAI47_05535	0.11	-1.5
1,164,797	-		IAI47_05535	0.11	-1.5
1,164,802	+		IAI47_05535	0.12	-0.5
1,164,803	-		IAI47_05535	0.12	-0.8
1,164,834	+		IAI47_05535	0.14	+0.6
1,164,834	+		IAI47_05535	0.14	-0.1
1,164,835	-		IAI47_05535	0.14	+1.1
1,164,963	+		IAI47_05535	0.25	+1.3
1,164,994	-		IAI47_05535	0.27	-1.9
1,165,079	+		IAI47_05535	0.34	-1.1
1,165,079	+		IAI47_05535	0.34	-0.7
1,165,079	+		IAI47_05535	0.34	-1.3
1,165,080	-		IAI47_05535	0.34	-0.2
1,165,080	-		IAI47_05535	0.34	-0.3
1,165,088	+		IAI47_05535	0.35	-2.3
1,165,088	+		IAI47_05535	0.35	-0.3
1,165,156	+		IAI47_05535	0.40	-1.9
1,165,156	+		IAI47_05535	0.40	-1.1
1,165,156	+		IAI47_05535	0.40	-1.1
1,165,156	+		IAI47_05535	0.40	+1.1
1,165,156	+		IAI47_05535	0.40	-0.7
1,165,156	+		IAI47_05535	0.40	-0.1
1,165,157	-		IAI47_05535	0.40	+0.4
1,165,157	-		IAI47_05535	0.40	-0.4
1,165,157	-		IAI47_05535	0.40	-0.9
1,165,157	-		IAI47_05535	0.40	-1.7
1,165,158	+		IAI47_05535	0.40	-0.2
1,165,158	+		IAI47_05535	0.40	+0.1
1,165,158	+		IAI47_05535	0.40	-2.0
1,165,158	+		IAI47_05535	0.40	-0.7
1,165,158	+		IAI47_05535	0.40	+0.7
1,165,159	-		IAI47_05535	0.41	-1.2
1,165,159	-		IAI47_05535	0.41	-1.5
1,165,159	-		IAI47_05535	0.41	-1.2
1,165,159	-		IAI47_05535	0.41	-0.3
1,165,159	-		IAI47_05535	0.41	-1.0
1,165,189	-		IAI47_05535	0.43	+2.1
1,165,189	-		IAI47_05535	0.43	-0.8
1,165,191	+		IAI47_05535	0.43	+1.2
1,165,192	-		IAI47_05535	0.43	-1.1
1,165,289	+		IAI47_05535	0.51	+2.4
1,165,290	-		IAI47_05535	0.51	-2.1
1,165,335	+		IAI47_05535	0.55	-0.9
1,165,335	+		IAI47_05535	0.55	-1.3
1,165,335	+		IAI47_05535	0.55	+0.0
1,165,335	+		IAI47_05535	0.55	-2.0
1,165,335	+		IAI47_05535	0.55	-0.4
1,165,335	+		IAI47_05535	0.55	+0.8
1,165,335	+		IAI47_05535	0.55	+0.1
1,165,336	-		IAI47_05535	0.55	+0.2
1,165,336	-		IAI47_05535	0.55	-0.5
1,165,348	+		IAI47_05535	0.56	+0.1
1,165,348	+		IAI47_05535	0.56	-2.0
1,165,348	+		IAI47_05535	0.56	-1.3
1,165,349	-		IAI47_05535	0.56	-0.7
1,165,359	+		IAI47_05535	0.57	-2.4
1,165,360	-		IAI47_05535	0.57	-3.0
1,165,400	+		IAI47_05535	0.60	-0.6
1,165,456	-		IAI47_05535	0.64	-1.1
1,165,480	+		IAI47_05535	0.66	-1.7
1,165,480	+		IAI47_05535	0.66	-0.4
1,165,480	+		IAI47_05535	0.66	+0.8
1,165,480	+		IAI47_05535	0.66	+0.9
1,165,481	-		IAI47_05535	0.67	-1.4
1,165,481	-		IAI47_05535	0.67	-1.5
1,165,481	-		IAI47_05535	0.67	-1.3
1,165,481	-		IAI47_05535	0.67	+1.1
1,165,502	+		IAI47_05535	0.68	-1.5
1,165,502	+		IAI47_05535	0.68	-2.4
1,165,502	+		IAI47_05535	0.68	+0.3
1,165,502	+		IAI47_05535	0.68	-1.3
1,165,503	-		IAI47_05535	0.68	-1.1
1,165,523	+		IAI47_05535	0.70	-2.4
1,165,523	+		IAI47_05535	0.70	-0.6
1,165,524	-		IAI47_05535	0.70	-1.1
1,165,524	-		IAI47_05535	0.70	+1.7
1,165,524	-		IAI47_05535	0.70	-0.8
1,165,592	+		IAI47_05535	0.75	+0.0
1,165,592	+		IAI47_05535	0.75	+0.6
1,165,592	+		IAI47_05535	0.75	+0.3
1,165,592	+		IAI47_05535	0.75	+0.3
1,165,592	+		IAI47_05535	0.75	+0.5
1,165,662	+		IAI47_05535	0.81	-0.3
1,165,662	+		IAI47_05535	0.81	-0.5
1,165,663	-		IAI47_05535	0.81	-0.9
1,165,794	+				+0.0
1,165,794	+				-0.9
1,165,794	+				+1.5
1,165,794	+				-0.1
1,165,794	+				-1.7
1,165,795	-				+0.7
1,165,795	-				-2.3
1,165,795	-				-1.1
1,165,864	+				+0.0
1,165,894	+				-1.2
1,165,895	-				-0.7
1,165,927	-				-0.2
1,165,944	+				-1.1
1,166,166	+		IAI47_05540	0.53	+1.3
1,166,166	+		IAI47_05540	0.53	+0.4
1,166,166	+		IAI47_05540	0.53	+0.9
1,166,166	+		IAI47_05540	0.53	-0.1
1,166,166	+		IAI47_05540	0.53	-1.3
1,166,167	-		IAI47_05540	0.53	+1.4
1,166,167	-		IAI47_05540	0.53	+1.7
1,166,167	-		IAI47_05540	0.53	-2.0
1,166,167	-		IAI47_05540	0.53	-1.2
1,166,170	+		IAI47_05540	0.54	-0.6
1,166,170	+		IAI47_05540	0.54	+0.0
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