Strain Fitness in Pantoea sp. MT58 around IAI47_12590

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,648,038	+		IAI47_12580	0.16	-0.3
2,648,045	-		IAI47_12580	0.17	-1.2
2,648,105	+		IAI47_12580	0.26	-0.6
2,648,105	+		IAI47_12580	0.26	+0.4
2,648,105	+		IAI47_12580	0.26	-0.7
2,648,106	-		IAI47_12580	0.26	+0.2
2,648,106	-		IAI47_12580	0.26	-0.1
2,648,106	-		IAI47_12580	0.26	-0.1
2,648,106	-		IAI47_12580	0.26	+0.4
2,648,106	-		IAI47_12580	0.26	+1.5
2,648,106	-		IAI47_12580	0.26	-0.9
2,648,121	+		IAI47_12580	0.29	-0.3
2,648,122	-		IAI47_12580	0.29	+0.2
2,648,122	-		IAI47_12580	0.29	+0.6
2,648,122	-		IAI47_12580	0.29	-0.0
2,648,126	+		IAI47_12580	0.29	+1.8
2,648,126	+		IAI47_12580	0.29	-1.6
2,648,126	+		IAI47_12580	0.29	-0.7
2,648,127	-		IAI47_12580	0.30	-1.1
2,648,127	-		IAI47_12580	0.30	-0.7
2,648,137	+		IAI47_12580	0.31	+0.8
2,648,138	-		IAI47_12580	0.31	-0.6
2,648,152	+		IAI47_12580	0.33	+0.8
2,648,152	+		IAI47_12580	0.33	-1.8
2,648,173	+		IAI47_12580	0.37	-1.2
2,648,173	+		IAI47_12580	0.37	+1.4
2,648,189	+		IAI47_12580	0.39	+0.4
2,648,189	+		IAI47_12580	0.39	-1.7
2,648,190	-		IAI47_12580	0.39	+0.2
2,648,203	+		IAI47_12580	0.41	+0.9
2,648,204	-		IAI47_12580	0.41	-0.4
2,648,220	+		IAI47_12580	0.44	+0.6
2,648,221	-		IAI47_12580	0.44	-2.3
2,648,294	+		IAI47_12580	0.55	-0.4
2,648,294	+		IAI47_12580	0.55	+1.4
2,648,295	-		IAI47_12580	0.55	+2.3
2,648,295	-		IAI47_12580	0.55	+0.5
2,648,317	+		IAI47_12580	0.59	+0.7
2,648,317	+		IAI47_12580	0.59	+1.2
2,648,317	+		IAI47_12580	0.59	-2.2
2,648,317	+		IAI47_12580	0.59	-0.3
2,648,317	+		IAI47_12580	0.59	+0.6
2,648,317	+		IAI47_12580	0.59	+0.7
2,648,318	-		IAI47_12580	0.59	+2.1
2,648,318	-		IAI47_12580	0.59	-0.3
2,648,318	-		IAI47_12580	0.59	+0.9
2,648,358	+		IAI47_12580	0.65	+0.3
2,648,359	-		IAI47_12580	0.65	-0.2
2,648,416	+		IAI47_12580	0.74	-0.9
2,648,417	-		IAI47_12580	0.74	+0.7
2,648,417	-		IAI47_12580	0.74	+0.7
2,648,432	-		IAI47_12580	0.76	+0.4
2,648,498	+		IAI47_12580	0.86	+1.7
2,648,498	+		IAI47_12580	0.86	-1.2
2,648,498	+		IAI47_12580	0.86	+1.6
2,648,498	+		IAI47_12580	0.86	+0.9
2,648,498	+		IAI47_12580	0.86	+1.3
2,648,498	+		IAI47_12580	0.86	+2.1
2,648,498	+		IAI47_12580	0.86	+0.2
2,648,499	-		IAI47_12580	0.86	-1.0
2,648,499	-		IAI47_12580	0.86	-0.8
2,648,499	-		IAI47_12580	0.86	+0.8
2,648,499	-		IAI47_12580	0.86	+0.5
2,648,499	-		IAI47_12580	0.86	+2.2
2,648,499	-		IAI47_12580	0.86	+0.8
2,648,499	-		IAI47_12580	0.86	+0.4
2,648,522	+				-1.2
2,648,522	+				-2.1
2,648,522	+				-0.9
2,648,522	+				-0.3
2,648,522	+				-0.0
2,648,522	+				-1.1
2,648,523	-				-0.8
2,648,523	-				-0.3
2,648,523	-				+1.4
2,648,534	+				+0.7
2,648,534	+				+0.1
2,648,534	+				-0.6
2,648,535	-				-0.9
2,648,535	-				-1.9
2,648,535	-				-2.5
2,648,535	-				-1.1
2,648,558	-				-0.4
2,648,585	+				+0.8
2,648,609	+				-1.0
2,648,609	+				+3.6
2,648,609	+				+0.1
2,648,610	-				+0.5
2,648,640	+				-0.6
2,648,640	+				+0.2
2,648,659	+				+1.0
2,648,677	-				+0.2
2,649,079	+		IAI47_12590	0.21	-0.0
2,649,079	+		IAI47_12590	0.21	-0.0
2,649,080	-		IAI47_12590	0.22	+0.2
2,649,112	+		IAI47_12590	0.33	+2.5
2,649,113	-		IAI47_12590	0.33	+0.4
2,649,113	-		IAI47_12590	0.33	-1.4
2,649,195	+		IAI47_12590	0.63	-0.8
2,649,232	+		IAI47_12590	0.76	-0.1
2,649,232	+		IAI47_12590	0.76	+0.4
2,649,232	+		IAI47_12590	0.76	+0.1
2,649,232	+		IAI47_12590	0.76	+1.1
2,649,232	+		IAI47_12590	0.76	-0.8
2,649,233	-		IAI47_12590	0.76	+0.9
2,649,233	-		IAI47_12590	0.76	+0.2
2,649,233	-		IAI47_12590	0.76	-1.2
2,649,233	-		IAI47_12590	0.76	-0.0
2,649,237	+		IAI47_12590	0.78	+1.6
2,649,238	-		IAI47_12590	0.78	-1.2
2,649,280	+				-0.6
2,649,299	+				-0.2
2,649,299	+				+0.9
2,649,299	+				+0.7
2,649,299	+				-0.3
2,649,299	+				-0.3
2,649,299	+				+1.2
2,649,299	+				+0.1
2,649,299	+				-0.8
2,649,300	-				-0.7
2,649,369	+				-2.4
2,649,369	+				-0.1
2,649,369	+				-0.1
2,649,369	+				-0.8
2,649,369	+				+0.9
2,649,370	-				-0.1
2,649,370	-				-2.8
2,649,375	+				-1.8
2,649,375	+				+1.1
2,649,375	+				-1.0
2,649,375	+				-1.2
2,649,375	+				-1.6
2,649,376	-				+0.2
2,649,376	-				-0.0
2,649,376	-				+0.9
2,649,383	+				+0.6
2,649,383	+				+1.0
2,649,383	+				+0.9
2,649,383	+				+0.3
2,649,383	+				+0.5
2,649,383	+				+0.5
2,649,384	-				-0.5
2,649,384	-				-0.3
2,649,384	-				-0.4
2,649,384	-				-1.2
2,649,384	-				+0.5
2,649,384	-				+0.8
2,649,384	-				+1.5
2,649,479	+				+1.6
2,649,480	-				+1.6
2,649,546	+		IAI47_12595	0.14	+1.7
2,649,546	+		IAI47_12595	0.14	-1.2
2,649,547	-		IAI47_12595	0.14	+0.3
2,649,547	-		IAI47_12595	0.14	-0.8
2,649,547	-		IAI47_12595	0.14	-0.1
2,649,608	+		IAI47_12595	0.19	+0.1
2,649,653	+		IAI47_12595	0.23	+3.0
2,649,653	+		IAI47_12595	0.23	-0.2
2,649,653	+		IAI47_12595	0.23	+0.3
2,649,653	+		IAI47_12595	0.23	-1.3
2,649,654	-		IAI47_12595	0.23	-0.1
2,649,654	-		IAI47_12595	0.23	+0.5
2,649,654	-		IAI47_12595	0.23	+1.2
2,649,654	-		IAI47_12595	0.23	+0.7
2,649,687	+		IAI47_12595	0.25	+0.7
2,649,714	-		IAI47_12595	0.28	-3.0
2,649,731	+		IAI47_12595	0.29	-1.6
2,649,731	+		IAI47_12595	0.29	-0.4
2,649,731	+		IAI47_12595	0.29	+1.7
2,649,732	-		IAI47_12595	0.29	-0.9
2,649,732	-		IAI47_12595	0.29	+2.0
2,649,754	+		IAI47_12595	0.31	-0.1
2,649,757	+		IAI47_12595	0.31	+0.2
2,649,757	+		IAI47_12595	0.31	+0.8
2,649,757	+		IAI47_12595	0.31	-0.5
2,649,757	+		IAI47_12595	0.31	+1.5
2,649,758	-		IAI47_12595	0.31	+0.2
2,649,758	-		IAI47_12595	0.31	-0.2
2,649,804	-		IAI47_12595	0.35	+0.3
2,649,804	-		IAI47_12595	0.35	+0.5
2,649,843	+		IAI47_12595	0.39	-0.6
2,649,843	+		IAI47_12595	0.39	+0.6
2,649,843	+		IAI47_12595	0.39	+0.6
2,649,843	+		IAI47_12595	0.39	-1.0
2,649,843	+		IAI47_12595	0.39	+1.1
2,649,843	+		IAI47_12595	0.39	+1.3
2,649,843	+		IAI47_12595	0.39	-1.7
2,649,844	-		IAI47_12595	0.39	+0.1
2,649,844	-		IAI47_12595	0.39	-0.6
2,649,844	-		IAI47_12595	0.39	+3.1
2,649,983	+		IAI47_12595	0.50	-1.0
2,649,984	-		IAI47_12595	0.50	-1.1
2,649,993	+		IAI47_12595	0.51	-0.1
2,649,994	-		IAI47_12595	0.51	-1.1
2,649,996	+		IAI47_12595	0.51	+0.3
2,649,997	-		IAI47_12595	0.51	+0.2
2,649,997	-		IAI47_12595	0.51	+0.8
2,649,997	-		IAI47_12595	0.51	-0.3
2,649,997	-		IAI47_12595	0.51	+0.9
2,649,997	-		IAI47_12595	0.51	-1.8
2,649,997	-		IAI47_12595	0.51	+0.0
2,649,997	-		IAI47_12595	0.51	-0.5
2,650,025	+		IAI47_12595	0.54	-0.9
2,650,025	+		IAI47_12595	0.54	+1.1
2,650,035	+		IAI47_12595	0.55	+0.2
2,650,036	-		IAI47_12595	0.55	+0.6
2,650,055	-		IAI47_12595	0.56	+0.3
2,650,071	+		IAI47_12595	0.58	+2.8
2,650,072	-		IAI47_12595	0.58	+2.2
2,650,072	-		IAI47_12595	0.58	-0.0
2,650,072	-		IAI47_12595	0.58	+1.1
2,650,112	+		IAI47_12595	0.61	+0.3
2,650,112	+		IAI47_12595	0.61	+1.1
2,650,113	-		IAI47_12595	0.61	+1.9
2,650,113	-		IAI47_12595	0.61	-0.0
2,650,113	-		IAI47_12595	0.61	-1.3
2,650,118	-		IAI47_12595	0.62	-0.4
2,650,133	+		IAI47_12595	0.63	+0.5
2,650,133	+		IAI47_12595	0.63	-0.5
2,650,133	+		IAI47_12595	0.63	+0.0
2,650,156	+		IAI47_12595	0.65	+0.9
2,650,157	-		IAI47_12595	0.65	+0.4
2,650,277	+		IAI47_12595	0.75	+0.5
2,650,278	-		IAI47_12595	0.75	-2.4