Strain Fitness in Pantoea sp. MT58 around IAI47_08575

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,811,694	+		IAI47_08565	0.12	-0.6
1,811,694	+		IAI47_08565	0.12	-1.4
1,811,695	-		IAI47_08565	0.12	+0.8
1,811,695	-		IAI47_08565	0.12	-1.0
1,811,707	-		IAI47_08565	0.14	+0.8
1,811,708	+		IAI47_08565	0.14	+1.6
1,811,709	-		IAI47_08565	0.14	+0.9
1,811,709	-		IAI47_08565	0.14	+1.7
1,811,709	-		IAI47_08565	0.14	+0.5
1,811,709	-		IAI47_08565	0.14	+0.8
1,811,714	+		IAI47_08565	0.15	-1.2
1,811,739	-		IAI47_08565	0.19	+0.0
1,811,739	-		IAI47_08565	0.19	+1.8
1,811,785	-		IAI47_08565	0.27	+1.2
1,811,785	-		IAI47_08565	0.27	-0.2
1,811,785	-		IAI47_08565	0.27	+0.3
1,811,847	+		IAI47_08565	0.37	+1.4
1,811,849	+		IAI47_08565	0.37	-0.4
1,811,849	+		IAI47_08565	0.37	+2.3
1,811,849	+		IAI47_08565	0.37	-0.2
1,811,849	+		IAI47_08565	0.37	+1.0
1,811,949	-		IAI47_08565	0.54	+2.2
1,811,949	-		IAI47_08565	0.54	-0.4
1,811,949	-		IAI47_08565	0.54	+0.9
1,811,974	+		IAI47_08565	0.58	+0.5
1,811,975	-		IAI47_08565	0.58	+1.0
1,811,976	+		IAI47_08565	0.58	-0.8
1,811,977	-		IAI47_08565	0.58	-0.3
1,812,008	+		IAI47_08565	0.63	+1.4
1,812,008	+		IAI47_08565	0.63	-0.5
1,812,009	-		IAI47_08565	0.63	+0.5
1,812,009	-		IAI47_08565	0.63	-0.4
1,812,009	-		IAI47_08565	0.63	-2.2
1,812,092	+		IAI47_08565	0.77	-0.9
1,812,092	+		IAI47_08565	0.77	+0.1
1,812,130	+		IAI47_08565	0.83	+1.0
1,812,130	+		IAI47_08565	0.83	-0.3
1,812,157	-		IAI47_08565	0.88	+0.1
1,812,268	-				-0.2
1,812,313	+		IAI47_08570	0.20	+0.2
1,812,354	+		IAI47_08570	0.29	-0.6
1,812,355	-		IAI47_08570	0.29	-0.4
1,812,468	+		IAI47_08570	0.55	-1.2
1,812,468	+		IAI47_08570	0.55	+1.3
1,812,468	+		IAI47_08570	0.55	+0.6
1,812,468	+		IAI47_08570	0.55	+0.5
1,812,468	+		IAI47_08570	0.55	+0.1
1,812,468	+		IAI47_08570	0.55	-0.2
1,812,469	-		IAI47_08570	0.55	-1.1
1,812,469	-		IAI47_08570	0.55	-0.5
1,812,469	-		IAI47_08570	0.55	+1.2
1,812,469	-		IAI47_08570	0.55	-2.3
1,812,469	-		IAI47_08570	0.55	+0.7
1,812,489	+		IAI47_08570	0.59	+0.7
1,812,489	+		IAI47_08570	0.59	+0.2
1,812,490	-		IAI47_08570	0.60	+0.9
1,812,490	-		IAI47_08570	0.60	-0.5
1,812,493	+		IAI47_08570	0.60	+0.5
1,812,493	+		IAI47_08570	0.60	-0.0
1,812,493	+		IAI47_08570	0.60	-0.2
1,812,493	+		IAI47_08570	0.60	-1.9
1,812,493	+		IAI47_08570	0.60	+0.6
1,812,494	-		IAI47_08570	0.60	+0.4
1,812,494	-		IAI47_08570	0.60	-2.6
1,812,628	+				+2.4
1,812,629	-				+0.8
1,812,732	+				+0.0
1,812,732	+				+2.4
1,812,732	+				-1.5
1,812,732	+				+1.2
1,812,732	+				-0.5
1,812,732	+				-1.8
1,812,732	+				-0.5
1,812,733	-				-0.4
1,812,753	-		IAI47_08575	0.10	+0.3
1,812,756	+		IAI47_08575	0.10	-2.4
1,812,757	-		IAI47_08575	0.11	+0.6
1,812,836	+		IAI47_08575	0.19	+1.9
1,812,874	+		IAI47_08575	0.24	+0.4
1,812,874	+		IAI47_08575	0.24	-0.6
1,812,875	-		IAI47_08575	0.24	-2.7
1,812,951	-		IAI47_08575	0.32	+0.1
1,813,069	+		IAI47_08575	0.45	-0.5
1,813,070	-		IAI47_08575	0.45	-0.0
1,813,115	+		IAI47_08575	0.51	-1.0
1,813,116	-		IAI47_08575	0.51	-0.5
1,813,116	-		IAI47_08575	0.51	+0.6
1,813,116	-		IAI47_08575	0.51	-0.2
1,813,118	+		IAI47_08575	0.51	+0.1
1,813,118	+		IAI47_08575	0.51	+1.2
1,813,151	+		IAI47_08575	0.55	-1.1
1,813,151	+		IAI47_08575	0.55	-0.4
1,813,151	+		IAI47_08575	0.55	-3.0
1,813,151	+		IAI47_08575	0.55	+2.0
1,813,151	+		IAI47_08575	0.55	+0.2
1,813,151	+		IAI47_08575	0.55	-1.8
1,813,151	+		IAI47_08575	0.55	+2.4
1,813,151	+		IAI47_08575	0.55	-0.4
1,813,151	+		IAI47_08575	0.55	+0.2
1,813,151	+		IAI47_08575	0.55	+0.0
1,813,151	+		IAI47_08575	0.55	+1.7
1,813,152	-		IAI47_08575	0.55	-0.6
1,813,152	-		IAI47_08575	0.55	+0.5
1,813,152	-		IAI47_08575	0.55	+1.9
1,813,152	-		IAI47_08575	0.55	+0.2
1,813,152	-		IAI47_08575	0.55	-0.1
1,813,152	-		IAI47_08575	0.55	-1.7
1,813,152	-		IAI47_08575	0.55	+0.8
1,813,152	-		IAI47_08575	0.55	+1.8
1,813,153	+		IAI47_08575	0.55	-0.0
1,813,153	+		IAI47_08575	0.55	+0.9
1,813,153	+		IAI47_08575	0.55	-0.9
1,813,153	+		IAI47_08575	0.55	-1.4
1,813,154	-		IAI47_08575	0.55	-2.3
1,813,154	-		IAI47_08575	0.55	-0.7
1,813,154	-		IAI47_08575	0.55	+0.3
1,813,204	+		IAI47_08575	0.60	+0.8
1,813,205	-		IAI47_08575	0.61	-0.3
1,813,246	+		IAI47_08575	0.65	+1.6
1,813,247	-		IAI47_08575	0.65	+1.1
1,813,247	-		IAI47_08575	0.65	-0.5
1,813,250	+		IAI47_08575	0.66	-0.1
1,813,251	-		IAI47_08575	0.66	-1.8
1,813,325	-		IAI47_08575	0.74	+0.9
1,813,356	+		IAI47_08575	0.77	-0.4
1,813,440	-		IAI47_08575	0.87	-1.1
1,813,440	-		IAI47_08575	0.87	-1.6
1,813,440	-		IAI47_08575	0.87	+0.1
1,813,440	-		IAI47_08575	0.87	+1.2
1,813,440	-		IAI47_08575	0.87	+1.5
1,813,440	-		IAI47_08575	0.87	-2.3
1,813,453	+		IAI47_08575	0.88	+1.0
1,813,454	-		IAI47_08575	0.88	-1.8
1,813,496	-				+0.7
1,813,532	+				-1.5
1,813,533	-				-0.4
1,813,533	-				-0.6
1,813,564	+				-0.4
1,813,564	+				-0.4
1,813,564	+				+0.2
1,813,564	+				-0.8
1,813,564	+				+0.1
1,813,564	+				+0.4
1,813,564	+				-1.2
1,813,564	+				-0.9
1,813,565	-				+0.3
1,813,586	+				-1.5
1,813,587	-				-0.3
1,813,587	-				-0.6
1,813,590	+				+1.4
1,813,590	+				+0.5
1,813,590	+				-0.4
1,813,590	+				+3.4
1,813,590	+				+0.7
1,813,590	+				+1.2
1,813,591	-				+1.0
1,813,591	-				+1.7
1,813,591	-				-1.1
1,813,680	+		IAI47_08580	0.30	-0.3
1,813,681	-		IAI47_08580	0.31	-1.2
1,813,681	-		IAI47_08580	0.31	-0.5
1,813,681	-		IAI47_08580	0.31	-1.6
1,813,681	-		IAI47_08580	0.31	+0.5
1,813,688	-		IAI47_08580	0.33	-1.1
1,813,728	+		IAI47_08580	0.46	-0.6
1,813,729	-		IAI47_08580	0.47	+0.1
1,813,739	+		IAI47_08580	0.50	-0.1
1,813,739	+		IAI47_08580	0.50	+1.7
1,813,740	-		IAI47_08580	0.50	+0.3
1,813,740	-		IAI47_08580	0.50	+2.4
1,813,746	+		IAI47_08580	0.52	-0.2
1,813,747	-		IAI47_08580	0.53	-0.8
1,813,747	-		IAI47_08580	0.53	+0.8
1,813,806	+		IAI47_08580	0.72	+0.5
1,813,807	-		IAI47_08580	0.73	+0.1
1,813,814	+		IAI47_08580	0.75	-0.7
1,813,815	-		IAI47_08580	0.75	-1.0
1,813,815	-		IAI47_08580	0.75	+0.5
1,813,815	-		IAI47_08580	0.75	+0.3
1,813,819	+		IAI47_08580	0.77	-1.1
1,813,837	+		IAI47_08580	0.83	-1.1
1,813,837	+		IAI47_08580	0.83	+0.4
1,813,838	-		IAI47_08580	0.83	+0.4
1,813,839	+		IAI47_08580	0.83	+1.1
1,813,840	-		IAI47_08580	0.84	-0.4
1,813,859	+				+0.4
1,813,860	-				-2.0
1,813,860	-				+0.3
1,813,860	-				-1.2
1,813,871	+				+0.5
1,813,871	+				-0.6
1,813,871	+				+2.6
1,813,871	+				+1.0
1,813,871	+				+0.8
1,813,871	+				-0.4
1,813,872	-				+0.4
1,813,872	-				+1.2
1,813,872	-				-0.4
1,813,872	-				+0.6
1,813,872	-				-1.5
1,813,872	-				-1.5
1,813,872	-				+0.7
1,813,872	-				+0.4
1,813,872	-				-1.1
1,813,872	-				+0.1
1,813,872	-				-0.9
1,813,872	-				-0.3
1,813,872	-				-0.4
1,813,883	+				+1.2
1,813,883	+				+1.8
1,813,884	-				+0.6
1,813,884	-				-1.3
1,813,884	-				-0.9
1,813,884	-				-1.3
1,813,888	+				-0.8
1,813,888	+				+0.6
1,813,888	+				+0.2
1,813,889	-				+2.4
1,813,889	-				-0.7
1,813,903	-				+1.7
1,813,903	-				+0.9
1,813,903	-				-0.6
1,813,911	+				-0.3
1,813,911	+				+0.7
1,813,911	+				-0.4
1,813,912	-				+0.8
1,813,912	-				-2.7
1,813,912	-				-0.5
1,813,912	-				+0.5
1,813,912	-				-0.1
1,813,912	-				-0.3
1,813,912	-				+0.8
1,813,919	+				+1.0
1,813,920	-				-0.2
1,813,926	-				+0.1
1,813,942	+		IAI47_08585	0.13	+1.4
1,813,943	-		IAI47_08585	0.13	-0.3
1,813,943	-		IAI47_08585	0.13	-0.4
1,813,943	-		IAI47_08585	0.13	+0.8
1,813,966	-		IAI47_08585	0.18	+1.2
1,813,969	+		IAI47_08585	0.19	+0.6
1,813,969	+		IAI47_08585	0.19	+0.0
1,813,969	+		IAI47_08585	0.19	-1.1
1,813,978	+		IAI47_08585	0.21	+1.8
1,814,008	-		IAI47_08585	0.27	+3.6
1,814,008	-		IAI47_08585	0.27	-0.3
1,814,017	-		IAI47_08585	0.29	-0.8
1,814,017	-		IAI47_08585	0.29	+1.4
1,814,053	-		IAI47_08585	0.37	+1.2
1,814,062	+		IAI47_08585	0.39	-0.2
1,814,063	-		IAI47_08585	0.39	-1.4
1,814,070	+		IAI47_08585	0.41	+0.9
1,814,118	-		IAI47_08585	0.51	-0.5
1,814,118	-		IAI47_08585	0.51	-0.4
1,814,118	-		IAI47_08585	0.51	-0.7
1,814,129	+		IAI47_08585	0.54	+0.6
1,814,129	+		IAI47_08585	0.54	-0.7
1,814,129	+		IAI47_08585	0.54	-0.1
1,814,129	+		IAI47_08585	0.54	+0.4
1,814,129	+		IAI47_08585	0.54	+0.0
1,814,137	-		IAI47_08585	0.56	-0.3
1,814,156	-		IAI47_08585	0.60	+0.9
1,814,156	-		IAI47_08585	0.60	-0.1
1,814,178	+		IAI47_08585	0.64	-0.4
1,814,178	+		IAI47_08585	0.64	+2.4
1,814,178	+		IAI47_08585	0.64	+0.4
1,814,178	+		IAI47_08585	0.64	+0.3
1,814,179	-		IAI47_08585	0.65	-1.2
1,814,179	-		IAI47_08585	0.65	-0.0
1,814,179	-		IAI47_08585	0.65	+1.8
1,814,203	+		IAI47_08585	0.70	+1.5
1,814,203	+		IAI47_08585	0.70	-1.2
1,814,204	-		IAI47_08585	0.70	-0.8
1,814,204	-		IAI47_08585	0.70	-1.9
1,814,204	-		IAI47_08585	0.70	-0.9
1,814,204	-		IAI47_08585	0.70	-0.9
1,814,204	-		IAI47_08585	0.70	-0.2
1,814,209	+		IAI47_08585	0.71	+0.0
1,814,209	+		IAI47_08585	0.71	-1.9
1,814,209	+		IAI47_08585	0.71	+0.3
1,814,209	+		IAI47_08585	0.71	+0.4
1,814,209	+		IAI47_08585	0.71	-0.4
1,814,209	+		IAI47_08585	0.71	+0.3
1,814,209	+		IAI47_08585	0.71	-0.3
1,814,209	+		IAI47_08585	0.71	-1.2
1,814,210	-		IAI47_08585	0.71	-0.5
1,814,210	-		IAI47_08585	0.71	-0.0
1,814,210	-		IAI47_08585	0.71	+0.9
1,814,214	+		IAI47_08585	0.72	-0.3
1,814,215	-		IAI47_08585	0.73	+0.3
1,814,215	-		IAI47_08585	0.73	-1.2
1,814,230	-		IAI47_08585	0.76	-0.2
1,814,230	-		IAI47_08585	0.76	+1.4
1,814,256	+		IAI47_08585	0.81	-0.6
1,814,268	-		IAI47_08585	0.84	-0.2
1,814,303	+				-0.2
1,814,303	+				+1.2
1,814,304	-				+0.5
1,814,304	-				-0.9
1,814,304	-				+0.9
1,814,304	-				-0.5
1,814,304	-				+0.1
1,814,310	-				+0.4
1,814,310	-				-0.0
1,814,310	-				+1.1
1,814,334	+				-1.2
1,814,334	+				+0.0
1,814,334	+				+0.5
1,814,334	+				-1.2
1,814,334	+				-1.7
1,814,334	+				+1.1
1,814,334	+				+0.9
1,814,335	-				+0.3
1,814,335	-				+1.3
1,814,335	-				+1.7
1,814,335	-				-0.5
1,814,340	+				-0.0
1,814,341	-				+0.1
1,814,341	-				-0.9
1,814,343	+				+0.7
1,814,343	+				-1.4
1,814,344	-				+2.7
1,814,344	-				+1.8
1,814,344	-				-0.9
1,814,351	+				+0.1
1,814,351	+				-1.1
1,814,351	+				+0.9
1,814,352	-				+0.2
1,814,352	-				-0.3
1,814,380	+				-0.1
1,814,385	+				-1.4
1,814,385	+				-0.7
1,814,386	-				-0.8
1,814,406	+				-0.2
1,814,406	+				-0.3
1,814,406	+				+0.7
1,814,407	-				+0.0
1,814,407	-				+0.4
1,814,526	+				-0.6
1,814,527	-				-0.8
1,814,545	+				-1.7
1,814,546	-				+0.3
1,814,546	-				-0.4
1,814,546	-				-0.7