Strain Fitness in Pantoea sp. MT58 around IAI47_06330

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_06325 and IAI47_06330 are separated by 337 nucleotidesIAI47_06330 and IAI47_06335 are separated by 145 nucleotidesIAI47_06335 and IAI47_06340 are separated by 13 nucleotides IAI47_06325: IAI47_06325 - acetate kinase, at 1,286,101 to 1,287,303 _06325 IAI47_06330: IAI47_06330 - DUF412 domain-containing protein, at 1,287,641 to 1,288,093 _06330 IAI47_06335: IAI47_06335 - YfbU family protein, at 1,288,239 to 1,288,733 _06335 IAI47_06340: IAI47_06340 - sugar phosphatase, at 1,288,747 to 1,289,406 _06340 Position (kb) 1287 1288 1289Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1286.741 kb on + strand, within IAI47_06325at 1286.741 kb on + strand, within IAI47_06325at 1286.741 kb on + strand, within IAI47_06325at 1286.741 kb on + strand, within IAI47_06325at 1286.741 kb on + strand, within IAI47_06325at 1286.741 kb on + strand, within IAI47_06325at 1286.742 kb on - strand, within IAI47_06325at 1286.742 kb on - strand, within IAI47_06325at 1286.742 kb on - strand, within IAI47_06325at 1286.754 kb on + strand, within IAI47_06325at 1286.754 kb on + strand, within IAI47_06325at 1286.813 kb on + strand, within IAI47_06325at 1286.819 kb on + strand, within IAI47_06325at 1286.819 kb on + strand, within IAI47_06325at 1286.819 kb on + strand, within IAI47_06325at 1286.819 kb on + strand, within IAI47_06325at 1286.819 kb on + strand, within IAI47_06325at 1286.820 kb on - strand, within IAI47_06325at 1286.820 kb on - strand, within IAI47_06325at 1286.820 kb on - strand, within IAI47_06325at 1286.820 kb on - strand, within IAI47_06325at 1286.861 kb on - strand, within IAI47_06325at 1286.913 kb on + strand, within IAI47_06325at 1287.030 kb on + strand, within IAI47_06325at 1287.031 kb on - strand, within IAI47_06325at 1287.032 kb on - strand, within IAI47_06325at 1287.090 kb on + strand, within IAI47_06325at 1287.256 kb on - strandat 1287.289 kb on + strandat 1287.290 kb on - strandat 1287.294 kb on + strandat 1287.294 kb on + strandat 1287.295 kb on - strandat 1287.295 kb on - strandat 1287.295 kb on - strandat 1287.309 kb on + strandat 1287.310 kb on - strandat 1287.314 kb on - strandat 1287.335 kb on + strandat 1287.336 kb on - strandat 1287.351 kb on - strandat 1287.351 kb on - strandat 1287.376 kb on - strandat 1287.381 kb on - strandat 1287.523 kb on - strandat 1287.523 kb on - strandat 1287.523 kb on - strandat 1287.523 kb on - strandat 1287.523 kb on - strandat 1287.538 kb on + strandat 1287.554 kb on + strandat 1287.698 kb on + strand, within IAI47_06330at 1287.698 kb on + strand, within IAI47_06330at 1287.698 kb on + strand, within IAI47_06330at 1287.698 kb on + strand, within IAI47_06330at 1287.698 kb on + strand, within IAI47_06330at 1287.698 kb on + strand, within IAI47_06330at 1287.698 kb on + strand, within IAI47_06330at 1287.698 kb on + strand, within IAI47_06330at 1287.698 kb on + strand, within IAI47_06330at 1287.698 kb on + strand, within IAI47_06330at 1287.698 kb on + strand, within IAI47_06330at 1287.698 kb on + strand, within IAI47_06330at 1287.698 kb on + strand, within IAI47_06330at 1287.698 kb on + strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.699 kb on - strand, within IAI47_06330at 1287.700 kb on + strand, within IAI47_06330at 1287.700 kb on + strand, within IAI47_06330at 1287.700 kb on + strand, within IAI47_06330at 1287.701 kb on - strand, within IAI47_06330at 1287.701 kb on - strand, within IAI47_06330at 1287.701 kb on - strand, within IAI47_06330at 1287.701 kb on - strand, within IAI47_06330at 1287.701 kb on - strand, within IAI47_06330at 1287.701 kb on - strand, within IAI47_06330at 1287.701 kb on - strand, within IAI47_06330at 1287.701 kb on - strand, within IAI47_06330at 1287.701 kb on - strand, within IAI47_06330at 1287.701 kb on - strand, within IAI47_06330at 1287.701 kb on - strand, within IAI47_06330at 1287.701 kb on - strand, within IAI47_06330at 1287.722 kb on - strand, within IAI47_06330at 1287.722 kb on - strand, within IAI47_06330at 1287.787 kb on + strand, within IAI47_06330at 1287.787 kb on + strand, within IAI47_06330at 1287.787 kb on + strand, within IAI47_06330at 1287.787 kb on + strand, within IAI47_06330at 1287.787 kb on + strand, within IAI47_06330at 1287.809 kb on - strand, within IAI47_06330at 1287.946 kb on + strand, within IAI47_06330at 1287.946 kb on + strand, within IAI47_06330at 1287.947 kb on - strand, within IAI47_06330at 1287.947 kb on - strand, within IAI47_06330at 1287.947 kb on - strand, within IAI47_06330at 1287.947 kb on - strand, within IAI47_06330at 1288.022 kb on + strand, within IAI47_06330at 1288.022 kb on + strand, within IAI47_06330at 1288.057 kb on + strandat 1288.058 kb on - strandat 1288.058 kb on - strandat 1288.092 kb on - strandat 1288.092 kb on - strandat 1288.117 kb on + strandat 1288.117 kb on + strandat 1288.118 kb on - strandat 1288.118 kb on - strandat 1288.121 kb on + strandat 1288.122 kb on - strandat 1288.128 kb on - strandat 1288.281 kb on + strandat 1288.282 kb on - strandat 1288.283 kb on + strandat 1288.283 kb on + strandat 1288.284 kb on - strandat 1288.284 kb on - strandat 1288.284 kb on - strandat 1288.284 kb on - strandat 1288.357 kb on - strand, within IAI47_06335at 1288.430 kb on + strand, within IAI47_06335at 1288.431 kb on - strand, within IAI47_06335at 1288.433 kb on + strand, within IAI47_06335at 1288.434 kb on - strand, within IAI47_06335at 1288.434 kb on - strand, within IAI47_06335at 1288.481 kb on + strand, within IAI47_06335at 1288.481 kb on + strand, within IAI47_06335at 1288.481 kb on + strand, within IAI47_06335at 1288.481 kb on + strand, within IAI47_06335at 1288.482 kb on - strand, within IAI47_06335at 1288.482 kb on - strand, within IAI47_06335at 1288.482 kb on - strand, within IAI47_06335at 1288.482 kb on - strand, within IAI47_06335at 1288.554 kb on + strand, within IAI47_06335at 1288.554 kb on + strand, within IAI47_06335at 1288.555 kb on - strand, within IAI47_06335at 1288.565 kb on + strand, within IAI47_06335at 1288.565 kb on + strand, within IAI47_06335at 1288.566 kb on - strand, within IAI47_06335at 1288.574 kb on + strand, within IAI47_06335at 1288.574 kb on + strand, within IAI47_06335at 1288.574 kb on + strand, within IAI47_06335at 1288.574 kb on + strand, within IAI47_06335at 1288.574 kb on + strand, within IAI47_06335at 1288.574 kb on + strand, within IAI47_06335at 1288.575 kb on - strand, within IAI47_06335at 1288.575 kb on - strand, within IAI47_06335at 1288.587 kb on + strand, within IAI47_06335at 1288.587 kb on + strand, within IAI47_06335at 1288.587 kb on + strand, within IAI47_06335at 1288.589 kb on + strand, within IAI47_06335at 1288.589 kb on + strand, within IAI47_06335at 1288.589 kb on + strand, within IAI47_06335at 1288.589 kb on + strand, within IAI47_06335at 1288.607 kb on + strand, within IAI47_06335at 1288.647 kb on + strand, within IAI47_06335at 1288.647 kb on + strand, within IAI47_06335at 1288.647 kb on + strand, within IAI47_06335at 1288.648 kb on - strand, within IAI47_06335at 1288.660 kb on + strand, within IAI47_06335at 1288.660 kb on + strand, within IAI47_06335at 1288.660 kb on + strand, within IAI47_06335at 1288.661 kb on - strand, within IAI47_06335at 1288.661 kb on - strand, within IAI47_06335at 1288.661 kb on - strand, within IAI47_06335at 1288.661 kb on - strand, within IAI47_06335at 1288.690 kb on - strandat 1288.690 kb on - strandat 1288.696 kb on + strandat 1288.696 kb on + strandat 1288.696 kb on + strandat 1288.696 kb on + strandat 1288.696 kb on + strandat 1288.697 kb on - strandat 1288.697 kb on - strandat 1288.697 kb on - strandat 1288.697 kb on - strandat 1288.707 kb on + strandat 1288.753 kb on + strandat 1288.753 kb on + strandat 1288.754 kb on - strandat 1288.754 kb on - strandat 1288.766 kb on + strandat 1288.766 kb on + strandat 1288.775 kb on + strandat 1288.846 kb on - strand, within IAI47_06340at 1288.872 kb on + strand, within IAI47_06340at 1288.873 kb on - strand, within IAI47_06340at 1288.935 kb on + strand, within IAI47_06340at 1288.935 kb on + strand, within IAI47_06340at 1288.935 kb on + strand, within IAI47_06340at 1288.936 kb on - strand, within IAI47_06340at 1288.937 kb on + strand, within IAI47_06340at 1288.937 kb on + strand, within IAI47_06340at 1288.937 kb on + strand, within IAI47_06340at 1288.937 kb on + strand, within IAI47_06340at 1288.938 kb on - strand, within IAI47_06340at 1288.938 kb on - strand, within IAI47_06340at 1288.938 kb on - strand, within IAI47_06340at 1288.938 kb on - strand, within IAI47_06340at 1288.950 kb on + strand, within IAI47_06340at 1289.043 kb on + strand, within IAI47_06340at 1289.043 kb on + strand, within IAI47_06340at 1289.044 kb on - strand, within IAI47_06340at 1289.044 kb on - strand, within IAI47_06340at 1289.044 kb on - strand, within IAI47_06340at 1289.044 kb on - strand, within IAI47_06340at 1289.044 kb on - strand, within IAI47_06340

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,286,741 + IAI47_06325 0.53 -0.9
1,286,741 + IAI47_06325 0.53 -0.9
1,286,741 + IAI47_06325 0.53 -0.3
1,286,741 + IAI47_06325 0.53 +1.1
1,286,741 + IAI47_06325 0.53 -0.9
1,286,741 + IAI47_06325 0.53 -0.1
1,286,742 - IAI47_06325 0.53 +0.3
1,286,742 - IAI47_06325 0.53 -1.3
1,286,742 - IAI47_06325 0.53 +1.5
1,286,754 + IAI47_06325 0.54 -1.9
1,286,754 + IAI47_06325 0.54 -1.4
1,286,813 + IAI47_06325 0.59 -0.7
1,286,819 + IAI47_06325 0.60 -1.1
1,286,819 + IAI47_06325 0.60 -1.3
1,286,819 + IAI47_06325 0.60 -1.5
1,286,819 + IAI47_06325 0.60 +0.2
1,286,819 + IAI47_06325 0.60 -0.9
1,286,820 - IAI47_06325 0.60 -0.5
1,286,820 - IAI47_06325 0.60 -0.3
1,286,820 - IAI47_06325 0.60 +1.5
1,286,820 - IAI47_06325 0.60 -1.3
1,286,861 - IAI47_06325 0.63 +0.3
1,286,913 + IAI47_06325 0.67 -1.9
1,287,030 + IAI47_06325 0.77 -1.1
1,287,031 - IAI47_06325 0.77 +0.6
1,287,032 - IAI47_06325 0.77 -0.3
1,287,090 + IAI47_06325 0.82 +0.9
1,287,256 - -0.4
1,287,289 + -0.9
1,287,290 - -0.5
1,287,294 + -1.1
1,287,294 + -0.1
1,287,295 - -0.8
1,287,295 - -0.9
1,287,295 - -1.4
1,287,309 + -1.4
1,287,310 - -2.1
1,287,314 - -2.1
1,287,335 + -0.7
1,287,336 - +1.3
1,287,351 - +1.7
1,287,351 - -1.5
1,287,376 - -0.0
1,287,381 - +1.3
1,287,523 - -0.4
1,287,523 - -0.3
1,287,523 - +0.6
1,287,523 - -0.9
1,287,523 - -0.3
1,287,538 + +0.5
1,287,554 + -0.8
1,287,698 + IAI47_06330 0.13 -1.1
1,287,698 + IAI47_06330 0.13 -0.5
1,287,698 + IAI47_06330 0.13 -0.2
1,287,698 + IAI47_06330 0.13 +1.0
1,287,698 + IAI47_06330 0.13 -1.2
1,287,698 + IAI47_06330 0.13 -1.0
1,287,698 + IAI47_06330 0.13 -0.3
1,287,698 + IAI47_06330 0.13 -0.9
1,287,698 + IAI47_06330 0.13 +0.7
1,287,698 + IAI47_06330 0.13 -0.0
1,287,698 + IAI47_06330 0.13 -0.3
1,287,698 + IAI47_06330 0.13 -0.3
1,287,698 + IAI47_06330 0.13 -0.9
1,287,698 + IAI47_06330 0.13 +0.2
1,287,699 - IAI47_06330 0.13 +2.5
1,287,699 - IAI47_06330 0.13 -1.9
1,287,699 - IAI47_06330 0.13 -1.8
1,287,699 - IAI47_06330 0.13 -1.7
1,287,699 - IAI47_06330 0.13 -2.3
1,287,699 - IAI47_06330 0.13 -0.1
1,287,699 - IAI47_06330 0.13 -1.0
1,287,699 - IAI47_06330 0.13 +0.4
1,287,699 - IAI47_06330 0.13 +0.3
1,287,699 - IAI47_06330 0.13 -0.9
1,287,699 - IAI47_06330 0.13 +0.4
1,287,699 - IAI47_06330 0.13 +0.6
1,287,699 - IAI47_06330 0.13 -0.2
1,287,699 - IAI47_06330 0.13 -0.9
1,287,699 - IAI47_06330 0.13 -2.0
1,287,699 - IAI47_06330 0.13 +0.2
1,287,700 + IAI47_06330 0.13 -1.6
1,287,700 + IAI47_06330 0.13 -0.2
1,287,700 + IAI47_06330 0.13 -0.5
1,287,701 - IAI47_06330 0.13 -1.2
1,287,701 - IAI47_06330 0.13 -0.3
1,287,701 - IAI47_06330 0.13 -2.1
1,287,701 - IAI47_06330 0.13 +1.1
1,287,701 - IAI47_06330 0.13 -1.0
1,287,701 - IAI47_06330 0.13 +0.6
1,287,701 - IAI47_06330 0.13 -1.1
1,287,701 - IAI47_06330 0.13 +1.8
1,287,701 - IAI47_06330 0.13 +0.5
1,287,701 - IAI47_06330 0.13 -1.5
1,287,701 - IAI47_06330 0.13 -0.9
1,287,701 - IAI47_06330 0.13 +0.6
1,287,722 - IAI47_06330 0.18 +0.8
1,287,722 - IAI47_06330 0.18 -0.4
1,287,787 + IAI47_06330 0.32 -0.6
1,287,787 + IAI47_06330 0.32 +0.1
1,287,787 + IAI47_06330 0.32 +0.3
1,287,787 + IAI47_06330 0.32 +0.1
1,287,787 + IAI47_06330 0.32 -0.6
1,287,809 - IAI47_06330 0.37 -1.5
1,287,946 + IAI47_06330 0.67 +0.9
1,287,946 + IAI47_06330 0.67 +0.1
1,287,947 - IAI47_06330 0.68 -0.9
1,287,947 - IAI47_06330 0.68 +0.3
1,287,947 - IAI47_06330 0.68 -0.0
1,287,947 - IAI47_06330 0.68 -0.9
1,288,022 + IAI47_06330 0.84 -0.1
1,288,022 + IAI47_06330 0.84 -2.8
1,288,057 + -0.2
1,288,058 - +2.7
1,288,058 - -0.1
1,288,092 - +0.3
1,288,092 - -0.5
1,288,117 + -0.1
1,288,117 + +1.3
1,288,118 - +1.0
1,288,118 - -3.2
1,288,121 + +0.3
1,288,122 - +0.9
1,288,128 - -1.1
1,288,281 + +0.3
1,288,282 - -1.0
1,288,283 + -0.2
1,288,283 + +3.7
1,288,284 - -0.0
1,288,284 - -1.5
1,288,284 - -0.9
1,288,284 - -1.3
1,288,357 - IAI47_06335 0.24 -0.1
1,288,430 + IAI47_06335 0.39 +0.3
1,288,431 - IAI47_06335 0.39 +0.4
1,288,433 + IAI47_06335 0.39 +1.7
1,288,434 - IAI47_06335 0.39 +1.5
1,288,434 - IAI47_06335 0.39 +1.0
1,288,481 + IAI47_06335 0.49 -0.2
1,288,481 + IAI47_06335 0.49 +1.2
1,288,481 + IAI47_06335 0.49 +0.4
1,288,481 + IAI47_06335 0.49 +0.4
1,288,482 - IAI47_06335 0.49 +0.3
1,288,482 - IAI47_06335 0.49 +0.4
1,288,482 - IAI47_06335 0.49 +1.4
1,288,482 - IAI47_06335 0.49 -0.3
1,288,554 + IAI47_06335 0.64 -0.4
1,288,554 + IAI47_06335 0.64 +0.4
1,288,555 - IAI47_06335 0.64 +1.0
1,288,565 + IAI47_06335 0.66 -0.5
1,288,565 + IAI47_06335 0.66 -0.1
1,288,566 - IAI47_06335 0.66 +0.1
1,288,574 + IAI47_06335 0.68 +0.7
1,288,574 + IAI47_06335 0.68 +1.6
1,288,574 + IAI47_06335 0.68 -0.9
1,288,574 + IAI47_06335 0.68 +0.0
1,288,574 + IAI47_06335 0.68 +0.5
1,288,574 + IAI47_06335 0.68 -1.1
1,288,575 - IAI47_06335 0.68 +0.2
1,288,575 - IAI47_06335 0.68 +0.1
1,288,587 + IAI47_06335 0.70 +0.7
1,288,587 + IAI47_06335 0.70 -1.0
1,288,587 + IAI47_06335 0.70 +2.9
1,288,589 + IAI47_06335 0.71 -1.0
1,288,589 + IAI47_06335 0.71 +0.5
1,288,589 + IAI47_06335 0.71 +0.1
1,288,589 + IAI47_06335 0.71 +0.4
1,288,607 + IAI47_06335 0.74 +2.5
1,288,647 + IAI47_06335 0.82 +0.2
1,288,647 + IAI47_06335 0.82 -0.4
1,288,647 + IAI47_06335 0.82 -0.3
1,288,648 - IAI47_06335 0.83 -0.7
1,288,660 + IAI47_06335 0.85 +0.3
1,288,660 + IAI47_06335 0.85 +1.0
1,288,660 + IAI47_06335 0.85 +0.3
1,288,661 - IAI47_06335 0.85 -1.5
1,288,661 - IAI47_06335 0.85 -0.5
1,288,661 - IAI47_06335 0.85 +0.0
1,288,661 - IAI47_06335 0.85 -0.2
1,288,690 - -0.2
1,288,690 - +0.3
1,288,696 + -0.2
1,288,696 + -0.8
1,288,696 + +0.2
1,288,696 + -2.2
1,288,696 + -0.0
1,288,697 - -0.9
1,288,697 - +1.6
1,288,697 - -0.8
1,288,697 - +1.1
1,288,707 + +0.2
1,288,753 + -0.4
1,288,753 + +0.2
1,288,754 - +0.4
1,288,754 - +2.5
1,288,766 + -0.7
1,288,766 + +0.5
1,288,775 + +2.8
1,288,846 - IAI47_06340 0.15 +0.4
1,288,872 + IAI47_06340 0.19 -0.4
1,288,873 - IAI47_06340 0.19 -0.7
1,288,935 + IAI47_06340 0.28 +0.3
1,288,935 + IAI47_06340 0.28 +0.9
1,288,935 + IAI47_06340 0.28 +1.2
1,288,936 - IAI47_06340 0.29 +0.0
1,288,937 + IAI47_06340 0.29 -2.4
1,288,937 + IAI47_06340 0.29 +1.6
1,288,937 + IAI47_06340 0.29 -0.2
1,288,937 + IAI47_06340 0.29 -2.1
1,288,938 - IAI47_06340 0.29 -1.7
1,288,938 - IAI47_06340 0.29 -0.5
1,288,938 - IAI47_06340 0.29 +0.6
1,288,938 - IAI47_06340 0.29 -1.2
1,288,950 + IAI47_06340 0.31 +1.5
1,289,043 + IAI47_06340 0.45 +0.2
1,289,043 + IAI47_06340 0.45 -0.6
1,289,044 - IAI47_06340 0.45 -1.4
1,289,044 - IAI47_06340 0.45 +0.4
1,289,044 - IAI47_06340 0.45 +2.1
1,289,044 - IAI47_06340 0.45 -1.7
1,289,044 - IAI47_06340 0.45 +1.9

Or see this region's nucleotide sequence