Strain Fitness in Pantoea sp. MT58 around IAI47_03200

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03195 and IAI47_03200 are separated by 99 nucleotidesIAI47_03200 and IAI47_03205 are separated by 204 nucleotides IAI47_03195: IAI47_03195 - cell division protein FtsP, at 662,188 to 663,618 _03195 IAI47_03200: IAI47_03200 - 2,5-didehydrogluconate reductase DkgA, at 663,718 to 664,542 _03200 IAI47_03205: IAI47_03205 - AraC family transcriptional regulator, at 664,747 to 665,655 _03205 Position (kb) 663 664 665Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 662.852 kb on + strand, within IAI47_03195at 662.939 kb on + strand, within IAI47_03195at 662.939 kb on + strand, within IAI47_03195at 663.050 kb on + strand, within IAI47_03195at 663.054 kb on + strand, within IAI47_03195at 663.147 kb on + strand, within IAI47_03195at 663.148 kb on - strand, within IAI47_03195at 663.154 kb on - strand, within IAI47_03195at 663.185 kb on + strand, within IAI47_03195at 663.551 kb on - strandat 663.616 kb on + strandat 663.616 kb on + strandat 663.616 kb on + strandat 663.616 kb on + strandat 663.657 kb on - strandat 663.657 kb on - strandat 663.660 kb on + strandat 663.660 kb on + strandat 663.660 kb on + strandat 663.661 kb on - strandat 663.661 kb on - strandat 663.661 kb on - strandat 663.667 kb on + strandat 663.668 kb on - strandat 663.668 kb on - strandat 663.668 kb on - strandat 663.668 kb on - strandat 663.668 kb on - strandat 663.692 kb on + strandat 663.692 kb on + strandat 663.692 kb on + strandat 663.692 kb on + strandat 663.693 kb on - strandat 663.719 kb on + strandat 663.719 kb on + strandat 663.719 kb on + strandat 663.719 kb on + strandat 663.719 kb on + strandat 663.720 kb on - strandat 663.720 kb on - strandat 663.720 kb on - strandat 663.720 kb on - strandat 663.720 kb on - strandat 663.723 kb on + strandat 663.723 kb on + strandat 663.723 kb on + strandat 663.723 kb on + strandat 663.723 kb on + strandat 663.724 kb on - strandat 663.724 kb on - strandat 663.774 kb on + strandat 663.774 kb on + strandat 663.775 kb on - strandat 663.792 kb on + strandat 663.793 kb on - strandat 663.816 kb on + strand, within IAI47_03200at 663.816 kb on + strand, within IAI47_03200at 663.816 kb on + strand, within IAI47_03200at 663.817 kb on - strand, within IAI47_03200at 663.817 kb on - strand, within IAI47_03200at 663.817 kb on - strand, within IAI47_03200at 663.918 kb on - strand, within IAI47_03200at 663.918 kb on - strand, within IAI47_03200at 663.918 kb on - strand, within IAI47_03200at 663.918 kb on - strand, within IAI47_03200at 663.918 kb on - strand, within IAI47_03200at 663.936 kb on + strand, within IAI47_03200at 663.936 kb on + strand, within IAI47_03200at 663.936 kb on + strand, within IAI47_03200at 663.936 kb on + strand, within IAI47_03200at 663.936 kb on + strand, within IAI47_03200at 663.937 kb on - strand, within IAI47_03200at 663.937 kb on - strand, within IAI47_03200at 663.937 kb on - strand, within IAI47_03200at 663.937 kb on - strand, within IAI47_03200at 664.032 kb on + strand, within IAI47_03200at 664.032 kb on + strand, within IAI47_03200at 664.033 kb on - strand, within IAI47_03200at 664.069 kb on + strand, within IAI47_03200at 664.070 kb on - strand, within IAI47_03200at 664.128 kb on + strand, within IAI47_03200at 664.128 kb on + strand, within IAI47_03200at 664.129 kb on - strand, within IAI47_03200at 664.129 kb on - strand, within IAI47_03200at 664.196 kb on + strand, within IAI47_03200at 664.196 kb on + strand, within IAI47_03200at 664.196 kb on + strand, within IAI47_03200at 664.196 kb on + strand, within IAI47_03200at 664.196 kb on + strand, within IAI47_03200at 664.196 kb on + strand, within IAI47_03200at 664.196 kb on + strand, within IAI47_03200at 664.196 kb on + strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.197 kb on - strand, within IAI47_03200at 664.232 kb on + strand, within IAI47_03200at 664.232 kb on + strand, within IAI47_03200at 664.232 kb on + strand, within IAI47_03200at 664.233 kb on - strand, within IAI47_03200at 664.391 kb on + strand, within IAI47_03200at 664.392 kb on - strand, within IAI47_03200at 664.392 kb on - strand, within IAI47_03200at 664.404 kb on + strand, within IAI47_03200at 664.419 kb on - strand, within IAI47_03200at 664.477 kb on + strandat 664.478 kb on - strandat 664.478 kb on - strandat 664.503 kb on + strandat 664.503 kb on + strandat 664.503 kb on + strandat 664.503 kb on + strandat 664.503 kb on + strandat 664.504 kb on - strandat 664.504 kb on - strandat 664.504 kb on - strandat 664.504 kb on - strandat 664.504 kb on - strandat 664.542 kb on + strandat 664.542 kb on + strandat 664.542 kb on + strandat 664.542 kb on + strandat 664.542 kb on + strandat 664.542 kb on + strandat 664.542 kb on + strandat 664.542 kb on + strandat 664.542 kb on + strandat 664.542 kb on + strandat 664.543 kb on - strandat 664.543 kb on - strandat 664.543 kb on - strandat 664.543 kb on - strandat 664.589 kb on + strandat 664.589 kb on + strandat 664.589 kb on + strandat 664.589 kb on + strandat 664.589 kb on + strandat 664.589 kb on + strandat 664.590 kb on - strandat 664.590 kb on - strandat 664.590 kb on - strandat 664.590 kb on - strandat 664.596 kb on - strandat 664.596 kb on - strandat 664.618 kb on + strandat 664.618 kb on + strandat 664.618 kb on + strandat 664.618 kb on + strandat 664.619 kb on - strandat 664.619 kb on - strandat 664.619 kb on - strandat 664.619 kb on - strandat 664.619 kb on - strandat 664.619 kb on - strandat 664.630 kb on + strandat 664.648 kb on + strandat 664.649 kb on - strandat 664.649 kb on - strandat 664.649 kb on - strandat 664.649 kb on - strandat 664.649 kb on - strandat 664.663 kb on - strandat 664.668 kb on + strandat 664.669 kb on - strandat 664.746 kb on + strandat 664.746 kb on + strandat 664.797 kb on - strandat 664.797 kb on - strandat 664.850 kb on - strand, within IAI47_03205at 664.885 kb on + strand, within IAI47_03205at 664.885 kb on + strand, within IAI47_03205at 664.885 kb on + strand, within IAI47_03205at 664.886 kb on - strand, within IAI47_03205at 664.886 kb on - strand, within IAI47_03205at 664.886 kb on - strand, within IAI47_03205at 664.886 kb on - strand, within IAI47_03205at 664.886 kb on - strand, within IAI47_03205at 664.886 kb on - strand, within IAI47_03205at 664.886 kb on - strand, within IAI47_03205at 664.886 kb on - strand, within IAI47_03205at 664.931 kb on - strand, within IAI47_03205at 664.931 kb on - strand, within IAI47_03205at 664.954 kb on + strand, within IAI47_03205at 664.954 kb on + strand, within IAI47_03205at 664.955 kb on - strand, within IAI47_03205at 664.955 kb on - strand, within IAI47_03205at 664.969 kb on + strand, within IAI47_03205at 664.969 kb on + strand, within IAI47_03205at 664.969 kb on + strand, within IAI47_03205at 664.970 kb on - strand, within IAI47_03205at 665.027 kb on + strand, within IAI47_03205at 665.028 kb on - strand, within IAI47_03205at 665.247 kb on + strand, within IAI47_03205at 665.247 kb on + strand, within IAI47_03205at 665.248 kb on - strand, within IAI47_03205at 665.248 kb on - strand, within IAI47_03205at 665.248 kb on - strand, within IAI47_03205at 665.251 kb on + strand, within IAI47_03205at 665.251 kb on + strand, within IAI47_03205at 665.251 kb on + strand, within IAI47_03205at 665.251 kb on + strand, within IAI47_03205at 665.252 kb on - strand, within IAI47_03205at 665.252 kb on - strand, within IAI47_03205at 665.252 kb on - strand, within IAI47_03205at 665.252 kb on - strand, within IAI47_03205at 665.252 kb on - strand, within IAI47_03205at 665.252 kb on - strand, within IAI47_03205at 665.252 kb on - strand, within IAI47_03205at 665.252 kb on - strand, within IAI47_03205at 665.252 kb on - strand, within IAI47_03205at 665.252 kb on - strand, within IAI47_03205at 665.254 kb on + strand, within IAI47_03205at 665.254 kb on + strand, within IAI47_03205at 665.254 kb on + strand, within IAI47_03205at 665.254 kb on + strand, within IAI47_03205at 665.254 kb on + strand, within IAI47_03205at 665.254 kb on + strand, within IAI47_03205at 665.254 kb on + strand, within IAI47_03205at 665.254 kb on + strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.255 kb on - strand, within IAI47_03205at 665.356 kb on + strand, within IAI47_03205at 665.357 kb on - strand, within IAI47_03205at 665.357 kb on - strand, within IAI47_03205at 665.424 kb on + strand, within IAI47_03205at 665.425 kb on - strand, within IAI47_03205at 665.456 kb on + strand, within IAI47_03205at 665.456 kb on + strand, within IAI47_03205at 665.456 kb on + strand, within IAI47_03205at 665.456 kb on + strand, within IAI47_03205at 665.456 kb on + strand, within IAI47_03205at 665.456 kb on + strand, within IAI47_03205at 665.456 kb on + strand, within IAI47_03205at 665.457 kb on - strand, within IAI47_03205at 665.457 kb on - strand, within IAI47_03205at 665.457 kb on - strand, within IAI47_03205at 665.457 kb on - strand, within IAI47_03205at 665.461 kb on + strand, within IAI47_03205at 665.461 kb on + strand, within IAI47_03205at 665.461 kb on + strand, within IAI47_03205at 665.461 kb on + strand, within IAI47_03205at 665.461 kb on + strand, within IAI47_03205at 665.461 kb on + strand, within IAI47_03205at 665.462 kb on - strand, within IAI47_03205at 665.462 kb on - strand, within IAI47_03205at 665.462 kb on - strand, within IAI47_03205at 665.462 kb on - strand, within IAI47_03205at 665.462 kb on - strand, within IAI47_03205at 665.462 kb on - strand, within IAI47_03205

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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662,852 + IAI47_03195 0.46 +0.0
662,939 + IAI47_03195 0.52 -0.2
662,939 + IAI47_03195 0.52 +0.1
663,050 + IAI47_03195 0.60 +1.5
663,054 + IAI47_03195 0.61 -0.4
663,147 + IAI47_03195 0.67 +0.0
663,148 - IAI47_03195 0.67 -1.1
663,154 - IAI47_03195 0.68 -1.0
663,185 + IAI47_03195 0.70 -2.6
663,551 - -1.6
663,616 + -0.8
663,616 + +1.1
663,616 + +0.4
663,616 + +0.1
663,657 - +0.6
663,657 - -0.5
663,660 + -0.8
663,660 + -0.5
663,660 + +0.5
663,661 - +1.3
663,661 - +0.2
663,661 - -1.4
663,667 + -1.1
663,668 - +3.3
663,668 - -0.5
663,668 - -1.2
663,668 - -1.3
663,668 - -0.8
663,692 + +0.3
663,692 + -0.9
663,692 + +0.9
663,692 + +4.0
663,693 - +0.0
663,719 + +1.4
663,719 + -1.0
663,719 + -0.3
663,719 + -1.2
663,719 + -0.2
663,720 - +1.2
663,720 - -0.2
663,720 - -0.3
663,720 - -0.3
663,720 - +0.9
663,723 + -0.8
663,723 + -0.7
663,723 + +0.1
663,723 + -0.6
663,723 + -0.7
663,724 - +0.5
663,724 - -0.2
663,774 + -0.2
663,774 + -0.1
663,775 - +2.6
663,792 + -0.1
663,793 - +0.1
663,816 + IAI47_03200 0.12 +0.3
663,816 + IAI47_03200 0.12 +0.1
663,816 + IAI47_03200 0.12 +1.5
663,817 - IAI47_03200 0.12 +0.2
663,817 - IAI47_03200 0.12 -0.3
663,817 - IAI47_03200 0.12 +1.6
663,918 - IAI47_03200 0.24 -1.5
663,918 - IAI47_03200 0.24 +0.4
663,918 - IAI47_03200 0.24 +2.1
663,918 - IAI47_03200 0.24 +1.0
663,918 - IAI47_03200 0.24 -0.7
663,936 + IAI47_03200 0.26 -1.8
663,936 + IAI47_03200 0.26 -0.9
663,936 + IAI47_03200 0.26 -0.7
663,936 + IAI47_03200 0.26 -1.0
663,936 + IAI47_03200 0.26 +1.2
663,937 - IAI47_03200 0.27 -0.8
663,937 - IAI47_03200 0.27 -0.5
663,937 - IAI47_03200 0.27 +0.8
663,937 - IAI47_03200 0.27 -2.0
664,032 + IAI47_03200 0.38 -0.3
664,032 + IAI47_03200 0.38 +1.3
664,033 - IAI47_03200 0.38 -1.2
664,069 + IAI47_03200 0.43 +0.3
664,070 - IAI47_03200 0.43 +0.7
664,128 + IAI47_03200 0.50 -0.4
664,128 + IAI47_03200 0.50 -0.4
664,129 - IAI47_03200 0.50 -2.1
664,129 - IAI47_03200 0.50 +0.8
664,196 + IAI47_03200 0.58 -0.5
664,196 + IAI47_03200 0.58 -0.3
664,196 + IAI47_03200 0.58 +0.9
664,196 + IAI47_03200 0.58 +0.1
664,196 + IAI47_03200 0.58 +0.9
664,196 + IAI47_03200 0.58 -1.1
664,196 + IAI47_03200 0.58 +1.1
664,196 + IAI47_03200 0.58 -0.5
664,197 - IAI47_03200 0.58 +2.4
664,197 - IAI47_03200 0.58 +0.5
664,197 - IAI47_03200 0.58 +0.7
664,197 - IAI47_03200 0.58 -0.8
664,197 - IAI47_03200 0.58 -0.7
664,197 - IAI47_03200 0.58 +0.4
664,197 - IAI47_03200 0.58 +0.3
664,197 - IAI47_03200 0.58 +0.1
664,197 - IAI47_03200 0.58 -0.4
664,197 - IAI47_03200 0.58 -0.8
664,197 - IAI47_03200 0.58 -0.4
664,197 - IAI47_03200 0.58 -1.2
664,197 - IAI47_03200 0.58 +0.2
664,197 - IAI47_03200 0.58 +0.8
664,197 - IAI47_03200 0.58 -1.8
664,197 - IAI47_03200 0.58 -0.2
664,197 - IAI47_03200 0.58 -0.5
664,232 + IAI47_03200 0.62 +0.3
664,232 + IAI47_03200 0.62 -0.9
664,232 + IAI47_03200 0.62 -0.8
664,233 - IAI47_03200 0.62 -0.4
664,391 + IAI47_03200 0.82 -0.2
664,392 - IAI47_03200 0.82 -1.2
664,392 - IAI47_03200 0.82 -1.6
664,404 + IAI47_03200 0.83 +1.2
664,419 - IAI47_03200 0.85 -0.5
664,477 + -0.2
664,478 - -3.3
664,478 - +1.2
664,503 + +1.0
664,503 + +0.7
664,503 + -0.6
664,503 + -0.7
664,503 + +0.5
664,504 - -0.5
664,504 - +1.0
664,504 - +0.3
664,504 - +0.5
664,504 - +0.5
664,542 + -0.2
664,542 + +0.0
664,542 + +1.0
664,542 + +1.0
664,542 + +0.7
664,542 + +0.2
664,542 + +2.2
664,542 + -0.2
664,542 + -0.0
664,542 + +1.1
664,543 - -0.8
664,543 - -1.5
664,543 - -0.7
664,543 - -0.8
664,589 + +0.8
664,589 + -0.2
664,589 + -2.3
664,589 + +0.0
664,589 + -0.3
664,589 + +0.4
664,590 - -0.5
664,590 - +0.6
664,590 - -0.8
664,590 - -0.6
664,596 - -2.1
664,596 - +0.0
664,618 + -0.3
664,618 + -0.6
664,618 + +2.8
664,618 + +0.7
664,619 - -0.5
664,619 - +0.8
664,619 - -1.0
664,619 - -0.3
664,619 - +0.2
664,619 - -0.2
664,630 + +0.9
664,648 + +0.5
664,649 - +1.1
664,649 - +1.0
664,649 - -0.9
664,649 - +1.4
664,649 - +0.4
664,663 - +0.1
664,668 + -0.2
664,669 - -1.8
664,746 + +1.4
664,746 + +0.9
664,797 - -0.7
664,797 - -0.4
664,850 - IAI47_03205 0.11 -0.5
664,885 + IAI47_03205 0.15 +0.7
664,885 + IAI47_03205 0.15 -0.3
664,885 + IAI47_03205 0.15 -0.5
664,886 - IAI47_03205 0.15 -1.1
664,886 - IAI47_03205 0.15 +1.9
664,886 - IAI47_03205 0.15 -0.1
664,886 - IAI47_03205 0.15 -1.4
664,886 - IAI47_03205 0.15 -0.5
664,886 - IAI47_03205 0.15 +0.9
664,886 - IAI47_03205 0.15 +0.1
664,886 - IAI47_03205 0.15 -1.3
664,931 - IAI47_03205 0.20 +1.0
664,931 - IAI47_03205 0.20 +0.4
664,954 + IAI47_03205 0.23 +0.5
664,954 + IAI47_03205 0.23 -0.5
664,955 - IAI47_03205 0.23 -1.0
664,955 - IAI47_03205 0.23 +0.1
664,969 + IAI47_03205 0.24 +0.3
664,969 + IAI47_03205 0.24 +1.3
664,969 + IAI47_03205 0.24 -0.9
664,970 - IAI47_03205 0.25 -1.5
665,027 + IAI47_03205 0.31 +0.8
665,028 - IAI47_03205 0.31 -0.7
665,247 + IAI47_03205 0.55 -0.3
665,247 + IAI47_03205 0.55 +0.3
665,248 - IAI47_03205 0.55 +2.4
665,248 - IAI47_03205 0.55 +0.7
665,248 - IAI47_03205 0.55 -0.1
665,251 + IAI47_03205 0.55 -0.2
665,251 + IAI47_03205 0.55 -0.9
665,251 + IAI47_03205 0.55 +2.0
665,251 + IAI47_03205 0.55 -0.9
665,252 - IAI47_03205 0.56 +0.9
665,252 - IAI47_03205 0.56 +0.8
665,252 - IAI47_03205 0.56 +0.3
665,252 - IAI47_03205 0.56 +1.4
665,252 - IAI47_03205 0.56 +1.1
665,252 - IAI47_03205 0.56 -1.4
665,252 - IAI47_03205 0.56 -1.2
665,252 - IAI47_03205 0.56 +0.5
665,252 - IAI47_03205 0.56 -0.2
665,252 - IAI47_03205 0.56 -1.0
665,254 + IAI47_03205 0.56 +0.1
665,254 + IAI47_03205 0.56 -0.1
665,254 + IAI47_03205 0.56 -0.1
665,254 + IAI47_03205 0.56 -0.1
665,254 + IAI47_03205 0.56 -0.5
665,254 + IAI47_03205 0.56 +0.7
665,254 + IAI47_03205 0.56 +1.5
665,254 + IAI47_03205 0.56 -0.0
665,255 - IAI47_03205 0.56 +0.0
665,255 - IAI47_03205 0.56 +0.4
665,255 - IAI47_03205 0.56 -1.5
665,255 - IAI47_03205 0.56 -0.2
665,255 - IAI47_03205 0.56 -1.0
665,255 - IAI47_03205 0.56 +0.7
665,255 - IAI47_03205 0.56 -0.3
665,255 - IAI47_03205 0.56 +0.4
665,255 - IAI47_03205 0.56 -0.5
665,255 - IAI47_03205 0.56 -0.7
665,255 - IAI47_03205 0.56 +0.4
665,255 - IAI47_03205 0.56 +0.7
665,255 - IAI47_03205 0.56 -1.5
665,255 - IAI47_03205 0.56 -0.5
665,356 + IAI47_03205 0.67 +1.0
665,357 - IAI47_03205 0.67 +2.9
665,357 - IAI47_03205 0.67 -0.5
665,424 + IAI47_03205 0.74 +0.0
665,425 - IAI47_03205 0.75 +1.3
665,456 + IAI47_03205 0.78 -0.6
665,456 + IAI47_03205 0.78 -0.7
665,456 + IAI47_03205 0.78 +0.2
665,456 + IAI47_03205 0.78 +1.9
665,456 + IAI47_03205 0.78 +0.8
665,456 + IAI47_03205 0.78 +1.7
665,456 + IAI47_03205 0.78 +1.9
665,457 - IAI47_03205 0.78 -0.2
665,457 - IAI47_03205 0.78 +0.3
665,457 - IAI47_03205 0.78 -1.3
665,457 - IAI47_03205 0.78 -1.8
665,461 + IAI47_03205 0.79 -0.4
665,461 + IAI47_03205 0.79 -1.4
665,461 + IAI47_03205 0.79 -1.5
665,461 + IAI47_03205 0.79 +0.6
665,461 + IAI47_03205 0.79 -0.1
665,461 + IAI47_03205 0.79 -0.0
665,462 - IAI47_03205 0.79 +0.4
665,462 - IAI47_03205 0.79 -0.0
665,462 - IAI47_03205 0.79 +1.3
665,462 - IAI47_03205 0.79 -0.5
665,462 - IAI47_03205 0.79 +0.6
665,462 - IAI47_03205 0.79 -0.2

Or see this region's nucleotide sequence