Strain Fitness in Pantoea sp. MT58 around IAI47_09350

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_09345 and IAI47_09350 are separated by 5 nucleotidesIAI47_09350 and IAI47_09355 are separated by 217 nucleotides IAI47_09345: IAI47_09345 - LysR family transcriptional regulator, at 1,974,190 to 1,975,086 _09345 IAI47_09350: IAI47_09350 - oxidoreductase, at 1,975,092 to 1,976,204 _09350 IAI47_09355: IAI47_09355 - enoyl-ACP reductase FabI, at 1,976,422 to 1,977,210 _09355 Position (kb) 1975 1976 1977Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1974.098 kb on + strandat 1974.098 kb on + strandat 1974.099 kb on - strandat 1974.107 kb on + strandat 1974.107 kb on + strandat 1974.108 kb on - strandat 1974.121 kb on + strandat 1974.121 kb on + strandat 1974.122 kb on - strandat 1974.167 kb on + strandat 1974.182 kb on + strandat 1974.186 kb on + strandat 1974.211 kb on + strandat 1974.212 kb on - strandat 1974.212 kb on - strandat 1974.212 kb on - strandat 1974.216 kb on - strandat 1974.219 kb on + strandat 1974.220 kb on - strandat 1974.345 kb on + strand, within IAI47_09345at 1974.361 kb on - strand, within IAI47_09345at 1974.412 kb on + strand, within IAI47_09345at 1974.413 kb on - strand, within IAI47_09345at 1974.551 kb on - strand, within IAI47_09345at 1974.698 kb on + strand, within IAI47_09345at 1974.698 kb on + strand, within IAI47_09345at 1974.698 kb on + strand, within IAI47_09345at 1974.698 kb on + strand, within IAI47_09345at 1974.699 kb on - strand, within IAI47_09345at 1974.809 kb on - strand, within IAI47_09345at 1974.809 kb on - strand, within IAI47_09345at 1974.816 kb on + strand, within IAI47_09345at 1974.817 kb on - strand, within IAI47_09345at 1974.817 kb on - strand, within IAI47_09345at 1974.817 kb on - strand, within IAI47_09345at 1974.870 kb on + strand, within IAI47_09345at 1974.870 kb on + strand, within IAI47_09345at 1974.870 kb on + strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.871 kb on - strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.873 kb on + strand, within IAI47_09345at 1974.874 kb on - strand, within IAI47_09345at 1974.874 kb on - strand, within IAI47_09345at 1974.874 kb on - strand, within IAI47_09345at 1974.874 kb on - strand, within IAI47_09345at 1974.975 kb on + strand, within IAI47_09345at 1974.975 kb on + strand, within IAI47_09345at 1974.976 kb on - strand, within IAI47_09345at 1974.976 kb on - strand, within IAI47_09345at 1975.083 kb on - strandat 1975.083 kb on - strandat 1975.084 kb on + strandat 1975.084 kb on + strandat 1975.084 kb on + strandat 1975.084 kb on + strandat 1975.085 kb on - strandat 1975.093 kb on + strandat 1975.093 kb on + strandat 1975.093 kb on + strandat 1975.094 kb on - strandat 1975.140 kb on + strandat 1975.155 kb on + strandat 1975.155 kb on + strandat 1975.155 kb on + strandat 1975.155 kb on + strandat 1975.156 kb on - strandat 1975.156 kb on - strandat 1975.159 kb on - strandat 1975.262 kb on + strand, within IAI47_09350at 1975.262 kb on + strand, within IAI47_09350at 1975.263 kb on - strand, within IAI47_09350at 1975.361 kb on + strand, within IAI47_09350at 1975.388 kb on + strand, within IAI47_09350at 1975.429 kb on + strand, within IAI47_09350at 1975.429 kb on + strand, within IAI47_09350at 1975.429 kb on + strand, within IAI47_09350at 1975.429 kb on + strand, within IAI47_09350at 1975.429 kb on + strand, within IAI47_09350at 1975.430 kb on - strand, within IAI47_09350at 1975.529 kb on - strand, within IAI47_09350at 1975.678 kb on + strand, within IAI47_09350at 1975.769 kb on + strand, within IAI47_09350at 1975.769 kb on + strand, within IAI47_09350at 1975.770 kb on - strand, within IAI47_09350at 1975.770 kb on - strand, within IAI47_09350at 1975.770 kb on - strand, within IAI47_09350at 1975.770 kb on - strand, within IAI47_09350at 1975.801 kb on + strand, within IAI47_09350at 1975.801 kb on + strand, within IAI47_09350at 1975.801 kb on + strand, within IAI47_09350at 1975.801 kb on + strand, within IAI47_09350at 1975.826 kb on + strand, within IAI47_09350at 1975.826 kb on + strand, within IAI47_09350at 1975.827 kb on - strand, within IAI47_09350at 1975.830 kb on - strand, within IAI47_09350at 1975.830 kb on - strand, within IAI47_09350at 1975.866 kb on + strand, within IAI47_09350at 1975.866 kb on + strand, within IAI47_09350at 1975.879 kb on + strand, within IAI47_09350at 1975.879 kb on + strand, within IAI47_09350at 1975.879 kb on + strand, within IAI47_09350at 1975.880 kb on - strand, within IAI47_09350at 1975.887 kb on - strand, within IAI47_09350at 1975.887 kb on - strand, within IAI47_09350at 1975.945 kb on + strand, within IAI47_09350at 1975.946 kb on - strand, within IAI47_09350at 1975.953 kb on + strand, within IAI47_09350at 1975.958 kb on + strand, within IAI47_09350at 1975.958 kb on + strand, within IAI47_09350at 1975.958 kb on + strand, within IAI47_09350at 1975.958 kb on + strand, within IAI47_09350at 1975.959 kb on - strand, within IAI47_09350at 1975.959 kb on - strand, within IAI47_09350at 1975.959 kb on - strand, within IAI47_09350at 1975.959 kb on - strand, within IAI47_09350at 1976.059 kb on - strand, within IAI47_09350at 1976.059 kb on - strand, within IAI47_09350at 1976.060 kb on - strand, within IAI47_09350at 1976.074 kb on + strand, within IAI47_09350at 1976.075 kb on - strand, within IAI47_09350at 1976.103 kb on - strandat 1976.141 kb on + strandat 1976.141 kb on + strandat 1976.141 kb on + strandat 1976.264 kb on + strandat 1976.265 kb on - strandat 1976.282 kb on + strandat 1976.283 kb on - strandat 1976.326 kb on + strandat 1976.326 kb on + strandat 1976.327 kb on - strandat 1976.330 kb on + strandat 1976.330 kb on + strandat 1976.331 kb on - strandat 1976.333 kb on + strandat 1976.345 kb on - strandat 1976.347 kb on - strandat 1976.386 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,974,098 + +0.3
1,974,098 + +0.5
1,974,099 - -0.7
1,974,107 + -0.9
1,974,107 + -1.2
1,974,108 - +0.3
1,974,121 + -0.2
1,974,121 + +0.2
1,974,122 - -0.8
1,974,167 + -0.5
1,974,182 + -0.9
1,974,186 + -0.4
1,974,211 + -1.2
1,974,212 - -1.4
1,974,212 - +0.5
1,974,212 - -0.5
1,974,216 - -1.4
1,974,219 + +0.0
1,974,220 - -0.4
1,974,345 + IAI47_09345 0.17 -0.0
1,974,361 - IAI47_09345 0.19 -0.9
1,974,412 + IAI47_09345 0.25 -1.2
1,974,413 - IAI47_09345 0.25 -1.7
1,974,551 - IAI47_09345 0.40 +0.8
1,974,698 + IAI47_09345 0.57 -0.6
1,974,698 + IAI47_09345 0.57 -1.0
1,974,698 + IAI47_09345 0.57 -0.2
1,974,698 + IAI47_09345 0.57 -0.2
1,974,699 - IAI47_09345 0.57 -0.6
1,974,809 - IAI47_09345 0.69 -2.1
1,974,809 - IAI47_09345 0.69 -2.0
1,974,816 + IAI47_09345 0.70 -1.2
1,974,817 - IAI47_09345 0.70 +0.1
1,974,817 - IAI47_09345 0.70 -0.3
1,974,817 - IAI47_09345 0.70 -1.2
1,974,870 + IAI47_09345 0.76 -0.3
1,974,870 + IAI47_09345 0.76 +0.7
1,974,870 + IAI47_09345 0.76 -0.9
1,974,871 - IAI47_09345 0.76 -0.9
1,974,871 - IAI47_09345 0.76 -0.2
1,974,871 - IAI47_09345 0.76 +0.4
1,974,871 - IAI47_09345 0.76 +0.4
1,974,871 - IAI47_09345 0.76 +0.1
1,974,873 + IAI47_09345 0.76 -0.9
1,974,873 + IAI47_09345 0.76 +0.1
1,974,873 + IAI47_09345 0.76 -0.8
1,974,873 + IAI47_09345 0.76 -1.3
1,974,873 + IAI47_09345 0.76 -0.1
1,974,874 - IAI47_09345 0.76 +0.0
1,974,874 - IAI47_09345 0.76 -1.3
1,974,874 - IAI47_09345 0.76 -0.2
1,974,874 - IAI47_09345 0.76 -0.7
1,974,975 + IAI47_09345 0.88 +1.5
1,974,975 + IAI47_09345 0.88 -0.0
1,974,976 - IAI47_09345 0.88 +1.1
1,974,976 - IAI47_09345 0.88 -0.2
1,975,083 - -0.4
1,975,083 - +0.5
1,975,084 + -0.6
1,975,084 + +0.7
1,975,084 + -2.0
1,975,084 + +0.1
1,975,085 - +0.3
1,975,093 + +1.2
1,975,093 + -1.3
1,975,093 + +0.7
1,975,094 - -1.8
1,975,140 + -0.7
1,975,155 + +1.0
1,975,155 + -2.8
1,975,155 + -1.5
1,975,155 + +1.3
1,975,156 - -0.7
1,975,156 - -1.0
1,975,159 - +1.5
1,975,262 + IAI47_09350 0.15 -1.7
1,975,262 + IAI47_09350 0.15 +0.1
1,975,263 - IAI47_09350 0.15 -0.9
1,975,361 + IAI47_09350 0.24 -1.0
1,975,388 + IAI47_09350 0.27 -1.4
1,975,429 + IAI47_09350 0.30 +0.3
1,975,429 + IAI47_09350 0.30 -0.6
1,975,429 + IAI47_09350 0.30 -0.4
1,975,429 + IAI47_09350 0.30 +0.2
1,975,429 + IAI47_09350 0.30 +3.3
1,975,430 - IAI47_09350 0.30 -0.9
1,975,529 - IAI47_09350 0.39 -0.6
1,975,678 + IAI47_09350 0.53 +0.0
1,975,769 + IAI47_09350 0.61 -1.3
1,975,769 + IAI47_09350 0.61 +0.5
1,975,770 - IAI47_09350 0.61 -0.7
1,975,770 - IAI47_09350 0.61 -0.8
1,975,770 - IAI47_09350 0.61 +0.4
1,975,770 - IAI47_09350 0.61 -0.1
1,975,801 + IAI47_09350 0.64 -0.0
1,975,801 + IAI47_09350 0.64 +0.5
1,975,801 + IAI47_09350 0.64 +0.6
1,975,801 + IAI47_09350 0.64 -1.0
1,975,826 + IAI47_09350 0.66 -1.7
1,975,826 + IAI47_09350 0.66 +0.7
1,975,827 - IAI47_09350 0.66 -0.1
1,975,830 - IAI47_09350 0.66 -1.0
1,975,830 - IAI47_09350 0.66 +0.5
1,975,866 + IAI47_09350 0.70 +0.1
1,975,866 + IAI47_09350 0.70 -1.1
1,975,879 + IAI47_09350 0.71 -0.2
1,975,879 + IAI47_09350 0.71 +0.5
1,975,879 + IAI47_09350 0.71 +0.2
1,975,880 - IAI47_09350 0.71 +1.6
1,975,887 - IAI47_09350 0.71 +0.3
1,975,887 - IAI47_09350 0.71 -0.3
1,975,945 + IAI47_09350 0.77 +0.4
1,975,946 - IAI47_09350 0.77 -0.6
1,975,953 + IAI47_09350 0.77 +0.6
1,975,958 + IAI47_09350 0.78 -0.3
1,975,958 + IAI47_09350 0.78 +0.4
1,975,958 + IAI47_09350 0.78 -0.4
1,975,958 + IAI47_09350 0.78 +0.5
1,975,959 - IAI47_09350 0.78 +0.2
1,975,959 - IAI47_09350 0.78 +0.8
1,975,959 - IAI47_09350 0.78 +0.0
1,975,959 - IAI47_09350 0.78 -0.3
1,976,059 - IAI47_09350 0.87 -0.4
1,976,059 - IAI47_09350 0.87 +0.5
1,976,060 - IAI47_09350 0.87 -0.3
1,976,074 + IAI47_09350 0.88 -0.5
1,976,075 - IAI47_09350 0.88 -0.3
1,976,103 - -1.3
1,976,141 + +0.1
1,976,141 + -1.6
1,976,141 + -0.4
1,976,264 + +0.6
1,976,265 - -1.0
1,976,282 + +2.5
1,976,283 - -0.9
1,976,326 + -1.0
1,976,326 + +1.8
1,976,327 - +0.6
1,976,330 + -1.0
1,976,330 + +0.2
1,976,331 - -0.9
1,976,333 + +0.1
1,976,345 - +0.1
1,976,347 - +1.1
1,976,386 - +0.2

Or see this region's nucleotide sequence