Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01960 and IAI47_01965 are separated by 57 nucleotides IAI47_01965 and IAI47_01970 are separated by 303 nucleotides IAI47_01970 and IAI47_01975 are separated by 513 nucleotides
IAI47_01960: IAI47_01960 - FUSC family protein, at 427,359 to 429,434
_01960
IAI47_01965: IAI47_01965 - cAMP-activated global transcriptional regulator CRP, at 429,492 to 430,124
_01965
IAI47_01970: IAI47_01970 - OsmC family protein, at 430,428 to 430,832
_01970
IAI47_01975: IAI47_01975 - phosphoribulokinase, at 431,346 to 432,215
_01975
Position (kb) 430
431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 429.453 kb on - strand at 430.145 kb on - strand at 430.145 kb on - strand at 430.304 kb on - strand at 430.304 kb on - strand at 430.304 kb on - strand at 430.346 kb on + strand at 430.346 kb on + strand at 430.374 kb on + strand at 430.375 kb on - strand at 430.389 kb on + strand at 430.410 kb on + strand at 430.411 kb on - strand at 430.450 kb on + strand at 430.451 kb on - strand at 430.451 kb on - strand at 430.451 kb on - strand at 430.495 kb on + strand, within IAI47_01970 at 430.495 kb on + strand, within IAI47_01970 at 430.495 kb on + strand, within IAI47_01970 at 430.585 kb on + strand, within IAI47_01970 at 430.586 kb on - strand, within IAI47_01970 at 430.608 kb on - strand, within IAI47_01970 at 430.630 kb on + strand, within IAI47_01970 at 430.673 kb on + strand, within IAI47_01970 at 430.673 kb on + strand, within IAI47_01970 at 430.673 kb on + strand, within IAI47_01970 at 430.673 kb on + strand, within IAI47_01970 at 430.673 kb on + strand, within IAI47_01970 at 430.694 kb on + strand, within IAI47_01970 at 430.695 kb on - strand, within IAI47_01970 at 430.706 kb on + strand, within IAI47_01970 at 430.707 kb on - strand, within IAI47_01970 at 430.707 kb on - strand, within IAI47_01970 at 430.707 kb on - strand, within IAI47_01970 at 430.722 kb on - strand, within IAI47_01970 at 430.722 kb on - strand, within IAI47_01970 at 430.761 kb on + strand, within IAI47_01970 at 430.761 kb on + strand, within IAI47_01970 at 430.762 kb on - strand, within IAI47_01970 at 430.788 kb on - strand, within IAI47_01970 at 430.802 kb on + strand at 430.803 kb on - strand at 430.803 kb on - strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.808 kb on + strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.809 kb on - strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.812 kb on + strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.813 kb on - strand at 430.830 kb on + strand at 430.830 kb on + strand at 430.831 kb on - strand at 430.831 kb on - strand at 430.851 kb on - strand at 430.900 kb on + strand at 430.900 kb on + strand at 430.900 kb on + strand at 430.901 kb on - strand at 430.901 kb on - strand at 430.914 kb on + strand at 430.914 kb on + strand at 430.914 kb on + strand at 430.915 kb on - strand at 430.915 kb on - strand at 430.931 kb on + strand at 430.931 kb on + strand at 430.934 kb on + strand at 430.934 kb on + strand at 430.934 kb on + strand at 430.934 kb on + strand at 430.935 kb on - strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on + strand at 431.063 kb on - strand at 431.064 kb on - strand at 431.064 kb on - strand at 431.064 kb on - strand at 431.064 kb on - strand at 431.064 kb on - strand at 431.064 kb on - strand at 431.064 kb on - strand at 431.157 kb on + strand at 431.157 kb on + strand at 431.157 kb on + strand at 431.157 kb on + strand at 431.157 kb on + strand at 431.157 kb on + strand at 431.157 kb on + strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.158 kb on - strand at 431.165 kb on + strand at 431.166 kb on - strand at 431.166 kb on - strand at 431.175 kb on + strand at 431.175 kb on + strand at 431.176 kb on - strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.242 kb on + strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.243 kb on - strand at 431.268 kb on + strand at 431.269 kb on - strand at 431.269 kb on - strand at 431.269 kb on - strand at 431.297 kb on + strand at 431.297 kb on + strand at 431.297 kb on + strand at 431.297 kb on + strand at 431.298 kb on - strand at 431.298 kb on - strand at 431.298 kb on - strand at 431.347 kb on + strand at 431.347 kb on + strand at 431.347 kb on + strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.348 kb on - strand at 431.360 kb on + strand at 431.361 kb on - strand at 431.361 kb on - strand at 431.361 kb on - strand at 431.361 kb on - strand at 431.361 kb on - strand at 431.361 kb on - strand at 431.441 kb on + strand, within IAI47_01975 at 431.442 kb on - strand, within IAI47_01975 at 431.442 kb on - strand, within IAI47_01975 at 431.442 kb on - strand, within IAI47_01975 at 431.485 kb on + strand, within IAI47_01975 at 431.498 kb on + strand, within IAI47_01975 at 431.499 kb on - strand, within IAI47_01975 at 431.647 kb on + strand, within IAI47_01975 at 431.647 kb on + strand, within IAI47_01975 at 431.647 kb on + strand, within IAI47_01975 at 431.647 kb on + strand, within IAI47_01975 at 431.647 kb on + strand, within IAI47_01975 at 431.648 kb on - strand, within IAI47_01975 at 431.648 kb on - strand, within IAI47_01975 at 431.648 kb on - strand, within IAI47_01975 at 431.745 kb on - strand, within IAI47_01975 at 431.792 kb on + strand, within IAI47_01975 at 431.792 kb on + strand, within IAI47_01975 at 431.792 kb on + strand, within IAI47_01975 at 431.793 kb on - strand, within IAI47_01975 at 431.830 kb on + strand, within IAI47_01975 at 431.830 kb on + strand, within IAI47_01975 at 431.830 kb on + strand, within IAI47_01975 at 431.830 kb on + strand, within IAI47_01975 at 431.830 kb on + strand, within IAI47_01975 at 431.831 kb on - strand, within IAI47_01975 at 431.831 kb on - strand, within IAI47_01975 at 431.831 kb on - strand, within IAI47_01975 at 431.831 kb on - strand, within IAI47_01975
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 429,453 - -0.4 430,145 - -1.3 430,145 - -2.4 430,304 - -1.1 430,304 - +0.7 430,304 - -2.4 430,346 + +0.8 430,346 + -0.7 430,374 + -0.8 430,375 - -0.1 430,389 + +2.2 430,410 + +0.4 430,411 - -0.8 430,450 + +1.1 430,451 - +0.7 430,451 - -0.2 430,451 - -0.4 430,495 + IAI47_01970 0.17 +0.3 430,495 + IAI47_01970 0.17 -0.0 430,495 + IAI47_01970 0.17 +2.0 430,585 + IAI47_01970 0.39 -0.9 430,586 - IAI47_01970 0.39 -1.4 430,608 - IAI47_01970 0.44 +0.1 430,630 + IAI47_01970 0.50 -0.0 430,673 + IAI47_01970 0.60 +0.4 430,673 + IAI47_01970 0.60 +0.5 430,673 + IAI47_01970 0.60 -0.3 430,673 + IAI47_01970 0.60 +1.5 430,673 + IAI47_01970 0.60 +0.9 430,694 + IAI47_01970 0.66 +2.5 430,695 - IAI47_01970 0.66 -0.5 430,706 + IAI47_01970 0.69 +0.2 430,707 - IAI47_01970 0.69 -1.0 430,707 - IAI47_01970 0.69 -1.5 430,707 - IAI47_01970 0.69 -2.1 430,722 - IAI47_01970 0.73 +0.9 430,722 - IAI47_01970 0.73 +0.5 430,761 + IAI47_01970 0.82 -0.0 430,761 + IAI47_01970 0.82 -1.8 430,762 - IAI47_01970 0.82 -1.2 430,788 - IAI47_01970 0.89 +0.5 430,802 + -0.5 430,803 - -0.1 430,803 - +0.1 430,808 + +1.6 430,808 + -1.7 430,808 + +0.6 430,808 + +0.7 430,808 + -0.2 430,808 + +0.1 430,808 + +0.5 430,808 + +2.0 430,808 + +0.3 430,808 + -0.6 430,808 + +0.3 430,809 - +0.6 430,809 - +0.0 430,809 - -0.5 430,809 - +0.0 430,809 - -0.3 430,809 - -0.9 430,809 - -1.9 430,809 - -0.2 430,809 - -0.6 430,809 - +1.1 430,809 - -0.4 430,809 - -0.3 430,809 - -0.3 430,809 - -0.3 430,812 + +1.5 430,812 + +0.4 430,812 + -0.4 430,812 + -1.7 430,812 + +1.4 430,812 + -0.5 430,812 + -1.7 430,812 + +0.6 430,812 + +0.9 430,812 + -0.2 430,812 + -3.1 430,812 + -0.9 430,812 + +1.6 430,812 + +1.8 430,813 - +0.0 430,813 - -2.4 430,813 - -1.3 430,813 - -1.4 430,813 - +0.5 430,813 - +1.0 430,813 - -0.5 430,813 - -0.8 430,813 - -2.7 430,813 - -0.4 430,830 + -1.1 430,830 + -0.2 430,831 - -0.8 430,831 - +0.6 430,851 - +0.1 430,900 + +0.8 430,900 + -0.9 430,900 + +0.1 430,901 - -0.9 430,901 - +0.3 430,914 + +0.8 430,914 + -0.2 430,914 + -1.0 430,915 - +0.9 430,915 - -0.0 430,931 + -1.7 430,931 + +0.1 430,934 + -0.3 430,934 + -0.9 430,934 + -1.1 430,934 + -1.3 430,935 - +0.5 431,063 + -0.5 431,063 + +0.7 431,063 + -0.2 431,063 + -0.1 431,063 + +0.1 431,063 + -1.1 431,063 + -1.4 431,063 + +0.6 431,063 + +1.0 431,063 - -0.4 431,064 - -0.1 431,064 - +0.0 431,064 - +0.7 431,064 - +0.0 431,064 - -0.5 431,064 - -0.3 431,064 - +0.1 431,157 + +0.7 431,157 + -1.0 431,157 + +1.1 431,157 + -1.2 431,157 + -0.7 431,157 + -0.1 431,157 + +0.1 431,158 - -0.5 431,158 - +0.1 431,158 - +0.3 431,158 - -0.1 431,158 - -1.3 431,158 - -0.1 431,158 - -0.2 431,158 - -0.5 431,158 - -0.1 431,158 - -0.5 431,158 - +0.3 431,158 - +0.5 431,158 - +0.9 431,158 - +1.2 431,158 - -0.2 431,158 - +1.6 431,158 - +1.1 431,158 - -0.1 431,165 + -0.3 431,166 - +0.0 431,166 - +0.8 431,175 + +0.7 431,175 + +0.5 431,176 - -0.5 431,242 + +0.6 431,242 + +0.2 431,242 + +0.7 431,242 + -0.8 431,242 + +2.0 431,242 + -0.5 431,242 + +0.9 431,242 + +0.3 431,242 + +0.5 431,242 + -0.4 431,242 + -0.1 431,242 + +0.7 431,242 + +0.2 431,242 + -1.7 431,242 + +1.2 431,242 + +0.6 431,243 - -0.2 431,243 - +0.1 431,243 - +0.0 431,243 - -1.4 431,243 - -2.7 431,243 - -0.5 431,243 - -0.4 431,243 - -0.1 431,243 - -1.1 431,243 - +1.0 431,243 - +0.4 431,243 - -2.3 431,243 - -1.1 431,268 + -0.7 431,269 - -0.4 431,269 - +1.1 431,269 - -1.7 431,297 + +0.5 431,297 + -0.3 431,297 + +0.6 431,297 + -0.9 431,298 - +0.3 431,298 - +1.0 431,298 - -1.8 431,347 + +1.2 431,347 + +0.6 431,347 + -0.1 431,348 - +1.0 431,348 - -0.7 431,348 - -0.2 431,348 - -0.8 431,348 - +0.3 431,348 - +0.1 431,348 - -1.5 431,348 - +0.6 431,348 - +0.2 431,360 + +0.5 431,361 - +0.9 431,361 - -1.5 431,361 - -1.4 431,361 - -1.8 431,361 - -0.5 431,361 - -0.3 431,441 + IAI47_01975 0.11 -1.4 431,442 - IAI47_01975 0.11 -1.7 431,442 - IAI47_01975 0.11 +1.4 431,442 - IAI47_01975 0.11 -0.7 431,485 + IAI47_01975 0.16 -0.4 431,498 + IAI47_01975 0.17 -0.4 431,499 - IAI47_01975 0.18 +0.5 431,647 + IAI47_01975 0.35 +0.5 431,647 + IAI47_01975 0.35 -0.7 431,647 + IAI47_01975 0.35 -0.1 431,647 + IAI47_01975 0.35 +0.5 431,647 + IAI47_01975 0.35 +0.1 431,648 - IAI47_01975 0.35 +0.7 431,648 - IAI47_01975 0.35 -1.1 431,648 - IAI47_01975 0.35 -0.3 431,745 - IAI47_01975 0.46 -1.0 431,792 + IAI47_01975 0.51 +0.7 431,792 + IAI47_01975 0.51 -1.4 431,792 + IAI47_01975 0.51 -1.0 431,793 - IAI47_01975 0.51 -0.4 431,830 + IAI47_01975 0.56 -1.1 431,830 + IAI47_01975 0.56 -0.9 431,830 + IAI47_01975 0.56 +2.4 431,830 + IAI47_01975 0.56 -0.3 431,830 + IAI47_01975 0.56 +0.4 431,831 - IAI47_01975 0.56 -0.5 431,831 - IAI47_01975 0.56 -2.1 431,831 - IAI47_01975 0.56 -0.2 431,831 - IAI47_01975 0.56 +0.9
Or see this region's nucleotide sequence