Strain Fitness in Pantoea sp. MT58 around IAI47_20400

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20395 and IAI47_20400 are separated by 207 nucleotidesIAI47_20400 and IAI47_20405 are separated by 71 nucleotides IAI47_20395: IAI47_20395 - MFS transporter, at 318,316 to 319,629 _20395 IAI47_20400: IAI47_20400 - DUF2132 domain-containing protein, at 319,837 to 320,145 _20400 IAI47_20405: IAI47_20405 - malate dehydrogenase (quinone), at 320,217 to 321,866 _20405 Position (kb) 319 320 321Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 318.859 kb on - strand, within IAI47_20395at 318.859 kb on - strand, within IAI47_20395at 318.859 kb on - strand, within IAI47_20395at 318.859 kb on - strand, within IAI47_20395at 318.859 kb on - strand, within IAI47_20395at 318.859 kb on - strand, within IAI47_20395at 318.860 kb on + strand, within IAI47_20395at 318.861 kb on - strand, within IAI47_20395at 318.861 kb on - strand, within IAI47_20395at 318.861 kb on - strand, within IAI47_20395at 318.894 kb on + strand, within IAI47_20395at 318.895 kb on - strand, within IAI47_20395at 318.946 kb on + strand, within IAI47_20395at 318.969 kb on + strand, within IAI47_20395at 318.969 kb on + strand, within IAI47_20395at 318.969 kb on + strand, within IAI47_20395at 318.969 kb on + strand, within IAI47_20395at 318.995 kb on - strand, within IAI47_20395at 319.141 kb on - strand, within IAI47_20395at 319.160 kb on + strand, within IAI47_20395at 319.160 kb on + strand, within IAI47_20395at 319.161 kb on - strand, within IAI47_20395at 319.161 kb on - strand, within IAI47_20395at 319.161 kb on - strand, within IAI47_20395at 319.217 kb on + strand, within IAI47_20395at 319.235 kb on - strand, within IAI47_20395at 319.358 kb on - strand, within IAI47_20395at 319.358 kb on - strand, within IAI47_20395at 319.445 kb on + strand, within IAI47_20395at 319.445 kb on + strand, within IAI47_20395at 319.445 kb on + strand, within IAI47_20395at 319.445 kb on + strand, within IAI47_20395at 319.445 kb on + strand, within IAI47_20395at 319.445 kb on + strand, within IAI47_20395at 319.445 kb on + strand, within IAI47_20395at 319.445 kb on + strand, within IAI47_20395at 319.445 kb on + strand, within IAI47_20395at 319.445 kb on + strand, within IAI47_20395at 319.446 kb on - strand, within IAI47_20395at 319.446 kb on - strand, within IAI47_20395at 319.446 kb on - strand, within IAI47_20395at 319.446 kb on - strand, within IAI47_20395at 319.446 kb on - strand, within IAI47_20395at 319.446 kb on - strand, within IAI47_20395at 319.506 kb on + strandat 319.507 kb on - strandat 319.507 kb on - strandat 319.526 kb on + strandat 319.646 kb on + strandat 319.646 kb on + strandat 319.646 kb on + strandat 319.647 kb on - strandat 319.665 kb on + strandat 319.665 kb on + strandat 319.665 kb on + strandat 319.671 kb on + strandat 319.672 kb on - strandat 319.672 kb on - strandat 319.728 kb on + strandat 319.728 kb on + strandat 319.728 kb on + strandat 319.728 kb on + strandat 319.729 kb on - strandat 319.729 kb on - strandat 319.729 kb on - strandat 319.729 kb on - strandat 319.791 kb on - strandat 319.831 kb on + strandat 319.832 kb on - strandat 319.835 kb on - strandat 319.893 kb on + strand, within IAI47_20400at 319.894 kb on - strand, within IAI47_20400at 319.901 kb on + strand, within IAI47_20400at 319.901 kb on + strand, within IAI47_20400at 319.913 kb on - strand, within IAI47_20400at 319.913 kb on - strand, within IAI47_20400at 319.947 kb on + strand, within IAI47_20400at 319.947 kb on + strand, within IAI47_20400at 319.947 kb on + strand, within IAI47_20400at 319.947 kb on + strand, within IAI47_20400at 319.947 kb on + strand, within IAI47_20400at 319.947 kb on + strand, within IAI47_20400at 319.947 kb on + strand, within IAI47_20400at 319.947 kb on + strand, within IAI47_20400at 319.948 kb on - strand, within IAI47_20400at 319.948 kb on - strand, within IAI47_20400at 319.948 kb on - strand, within IAI47_20400at 319.956 kb on + strand, within IAI47_20400at 319.956 kb on + strand, within IAI47_20400at 319.957 kb on - strand, within IAI47_20400at 319.957 kb on - strand, within IAI47_20400at 319.974 kb on + strand, within IAI47_20400at 319.994 kb on + strand, within IAI47_20400at 320.001 kb on + strand, within IAI47_20400at 320.002 kb on - strand, within IAI47_20400at 320.035 kb on + strand, within IAI47_20400at 320.036 kb on - strand, within IAI47_20400at 320.048 kb on + strand, within IAI47_20400at 320.048 kb on + strand, within IAI47_20400at 320.048 kb on + strand, within IAI47_20400at 320.144 kb on - strandat 320.144 kb on - strandat 320.144 kb on - strandat 320.144 kb on - strandat 320.146 kb on + strandat 320.146 kb on + strandat 320.182 kb on + strandat 320.392 kb on + strand, within IAI47_20405at 320.393 kb on - strand, within IAI47_20405at 320.393 kb on - strand, within IAI47_20405at 320.393 kb on - strand, within IAI47_20405at 320.438 kb on + strand, within IAI47_20405at 320.439 kb on - strand, within IAI47_20405at 320.439 kb on - strand, within IAI47_20405at 320.439 kb on - strand, within IAI47_20405at 320.481 kb on - strand, within IAI47_20405at 320.582 kb on + strand, within IAI47_20405at 320.582 kb on + strand, within IAI47_20405at 320.660 kb on - strand, within IAI47_20405at 320.663 kb on - strand, within IAI47_20405at 320.663 kb on - strand, within IAI47_20405at 320.678 kb on + strand, within IAI47_20405at 320.679 kb on - strand, within IAI47_20405at 320.719 kb on + strand, within IAI47_20405at 320.719 kb on + strand, within IAI47_20405at 320.719 kb on + strand, within IAI47_20405at 320.720 kb on - strand, within IAI47_20405at 320.720 kb on - strand, within IAI47_20405at 320.738 kb on + strand, within IAI47_20405at 320.738 kb on + strand, within IAI47_20405at 320.738 kb on + strand, within IAI47_20405at 320.744 kb on + strand, within IAI47_20405at 320.744 kb on + strand, within IAI47_20405at 320.744 kb on + strand, within IAI47_20405at 320.772 kb on - strand, within IAI47_20405at 320.772 kb on - strand, within IAI47_20405at 320.783 kb on + strand, within IAI47_20405at 320.783 kb on + strand, within IAI47_20405at 320.878 kb on + strand, within IAI47_20405at 320.935 kb on + strand, within IAI47_20405at 320.935 kb on + strand, within IAI47_20405at 320.936 kb on - strand, within IAI47_20405at 320.936 kb on - strand, within IAI47_20405at 320.936 kb on - strand, within IAI47_20405at 320.936 kb on - strand, within IAI47_20405at 321.013 kb on + strand, within IAI47_20405at 321.013 kb on + strand, within IAI47_20405at 321.013 kb on + strand, within IAI47_20405at 321.013 kb on + strand, within IAI47_20405at 321.013 kb on + strand, within IAI47_20405at 321.013 kb on + strand, within IAI47_20405at 321.013 kb on + strand, within IAI47_20405at 321.014 kb on - strand, within IAI47_20405at 321.014 kb on - strand, within IAI47_20405at 321.014 kb on - strand, within IAI47_20405at 321.014 kb on - strand, within IAI47_20405at 321.014 kb on - strand, within IAI47_20405at 321.014 kb on - strand, within IAI47_20405at 321.014 kb on - strand, within IAI47_20405at 321.014 kb on - strand, within IAI47_20405at 321.017 kb on + strand, within IAI47_20405at 321.018 kb on - strand, within IAI47_20405at 321.032 kb on + strand, within IAI47_20405at 321.085 kb on + strand, within IAI47_20405at 321.085 kb on + strand, within IAI47_20405at 321.085 kb on + strand, within IAI47_20405at 321.085 kb on + strand, within IAI47_20405at 321.086 kb on - strand, within IAI47_20405at 321.086 kb on - strand, within IAI47_20405at 321.086 kb on - strand, within IAI47_20405at 321.086 kb on - strand, within IAI47_20405at 321.120 kb on - strand, within IAI47_20405at 321.128 kb on + strand, within IAI47_20405at 321.128 kb on + strand, within IAI47_20405at 321.129 kb on - strand, within IAI47_20405

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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318,859 - IAI47_20395 0.41 -1.8
318,859 - IAI47_20395 0.41 +0.7
318,859 - IAI47_20395 0.41 -1.3
318,859 - IAI47_20395 0.41 -0.6
318,859 - IAI47_20395 0.41 -0.4
318,859 - IAI47_20395 0.41 -1.2
318,860 + IAI47_20395 0.41 +0.1
318,861 - IAI47_20395 0.41 -0.1
318,861 - IAI47_20395 0.41 -1.9
318,861 - IAI47_20395 0.41 -2.5
318,894 + IAI47_20395 0.44 -1.8
318,895 - IAI47_20395 0.44 +1.5
318,946 + IAI47_20395 0.48 -0.1
318,969 + IAI47_20395 0.50 -1.8
318,969 + IAI47_20395 0.50 +0.0
318,969 + IAI47_20395 0.50 +0.6
318,969 + IAI47_20395 0.50 -2.0
318,995 - IAI47_20395 0.52 +0.4
319,141 - IAI47_20395 0.63 +0.4
319,160 + IAI47_20395 0.64 -2.0
319,160 + IAI47_20395 0.64 -1.1
319,161 - IAI47_20395 0.64 -1.5
319,161 - IAI47_20395 0.64 -1.3
319,161 - IAI47_20395 0.64 -0.1
319,217 + IAI47_20395 0.69 +1.1
319,235 - IAI47_20395 0.70 +1.1
319,358 - IAI47_20395 0.79 +0.6
319,358 - IAI47_20395 0.79 -0.1
319,445 + IAI47_20395 0.86 -0.3
319,445 + IAI47_20395 0.86 -1.8
319,445 + IAI47_20395 0.86 -0.9
319,445 + IAI47_20395 0.86 +0.3
319,445 + IAI47_20395 0.86 -0.2
319,445 + IAI47_20395 0.86 +1.2
319,445 + IAI47_20395 0.86 +0.8
319,445 + IAI47_20395 0.86 -2.0
319,445 + IAI47_20395 0.86 +0.1
319,445 + IAI47_20395 0.86 +3.4
319,446 - IAI47_20395 0.86 +0.3
319,446 - IAI47_20395 0.86 +1.3
319,446 - IAI47_20395 0.86 +0.7
319,446 - IAI47_20395 0.86 +1.2
319,446 - IAI47_20395 0.86 -1.8
319,446 - IAI47_20395 0.86 -0.6
319,506 + -0.1
319,507 - +0.7
319,507 - +1.4
319,526 + -1.6
319,646 + +0.6
319,646 + -0.7
319,646 + +2.1
319,647 - -0.5
319,665 + -1.5
319,665 + -1.1
319,665 + -0.4
319,671 + -0.5
319,672 - +1.4
319,672 - +0.8
319,728 + +2.6
319,728 + -1.6
319,728 + -0.2
319,728 + -0.4
319,729 - +0.5
319,729 - +1.6
319,729 - +0.1
319,729 - -0.8
319,791 - +0.2
319,831 + -0.2
319,832 - +0.6
319,835 - +0.7
319,893 + IAI47_20400 0.18 -1.3
319,894 - IAI47_20400 0.18 +0.6
319,901 + IAI47_20400 0.21 -0.8
319,901 + IAI47_20400 0.21 +1.8
319,913 - IAI47_20400 0.25 +1.6
319,913 - IAI47_20400 0.25 +3.3
319,947 + IAI47_20400 0.36 +0.2
319,947 + IAI47_20400 0.36 -0.1
319,947 + IAI47_20400 0.36 +0.6
319,947 + IAI47_20400 0.36 -0.2
319,947 + IAI47_20400 0.36 -0.2
319,947 + IAI47_20400 0.36 +0.4
319,947 + IAI47_20400 0.36 -1.3
319,947 + IAI47_20400 0.36 +0.3
319,948 - IAI47_20400 0.36 -0.1
319,948 - IAI47_20400 0.36 +0.1
319,948 - IAI47_20400 0.36 +0.2
319,956 + IAI47_20400 0.39 +0.2
319,956 + IAI47_20400 0.39 -0.7
319,957 - IAI47_20400 0.39 +0.8
319,957 - IAI47_20400 0.39 +1.8
319,974 + IAI47_20400 0.44 +1.2
319,994 + IAI47_20400 0.51 +0.1
320,001 + IAI47_20400 0.53 -0.3
320,002 - IAI47_20400 0.53 +0.7
320,035 + IAI47_20400 0.64 +2.3
320,036 - IAI47_20400 0.64 +1.6
320,048 + IAI47_20400 0.68 -0.3
320,048 + IAI47_20400 0.68 +1.4
320,048 + IAI47_20400 0.68 +2.6
320,144 - -0.4
320,144 - -0.2
320,144 - +1.2
320,144 - -0.8
320,146 + +0.6
320,146 + -0.7
320,182 + +1.1
320,392 + IAI47_20405 0.11 -2.1
320,393 - IAI47_20405 0.11 +0.3
320,393 - IAI47_20405 0.11 +2.3
320,393 - IAI47_20405 0.11 +0.2
320,438 + IAI47_20405 0.13 +0.3
320,439 - IAI47_20405 0.13 +0.4
320,439 - IAI47_20405 0.13 -0.5
320,439 - IAI47_20405 0.13 -0.2
320,481 - IAI47_20405 0.16 +2.4
320,582 + IAI47_20405 0.22 -0.1
320,582 + IAI47_20405 0.22 +0.2
320,660 - IAI47_20405 0.27 -0.2
320,663 - IAI47_20405 0.27 -3.3
320,663 - IAI47_20405 0.27 -2.1
320,678 + IAI47_20405 0.28 +0.8
320,679 - IAI47_20405 0.28 -1.0
320,719 + IAI47_20405 0.30 +1.4
320,719 + IAI47_20405 0.30 -1.4
320,719 + IAI47_20405 0.30 +1.4
320,720 - IAI47_20405 0.30 +0.5
320,720 - IAI47_20405 0.30 -0.9
320,738 + IAI47_20405 0.32 +0.1
320,738 + IAI47_20405 0.32 +0.7
320,738 + IAI47_20405 0.32 +0.2
320,744 + IAI47_20405 0.32 -0.1
320,744 + IAI47_20405 0.32 +0.6
320,744 + IAI47_20405 0.32 +0.9
320,772 - IAI47_20405 0.34 -1.9
320,772 - IAI47_20405 0.34 +3.4
320,783 + IAI47_20405 0.34 +1.5
320,783 + IAI47_20405 0.34 -0.7
320,878 + IAI47_20405 0.40 -0.6
320,935 + IAI47_20405 0.44 +0.3
320,935 + IAI47_20405 0.44 -0.9
320,936 - IAI47_20405 0.44 -1.0
320,936 - IAI47_20405 0.44 +0.9
320,936 - IAI47_20405 0.44 -0.4
320,936 - IAI47_20405 0.44 -1.1
321,013 + IAI47_20405 0.48 +0.9
321,013 + IAI47_20405 0.48 +1.4
321,013 + IAI47_20405 0.48 -1.5
321,013 + IAI47_20405 0.48 -0.6
321,013 + IAI47_20405 0.48 +1.0
321,013 + IAI47_20405 0.48 -1.2
321,013 + IAI47_20405 0.48 -0.2
321,014 - IAI47_20405 0.48 +0.3
321,014 - IAI47_20405 0.48 +0.1
321,014 - IAI47_20405 0.48 +1.6
321,014 - IAI47_20405 0.48 +0.4
321,014 - IAI47_20405 0.48 -0.8
321,014 - IAI47_20405 0.48 +0.3
321,014 - IAI47_20405 0.48 -1.5
321,014 - IAI47_20405 0.48 +1.6
321,017 + IAI47_20405 0.48 +0.0
321,018 - IAI47_20405 0.49 +1.2
321,032 + IAI47_20405 0.49 -0.6
321,085 + IAI47_20405 0.53 -1.5
321,085 + IAI47_20405 0.53 +0.9
321,085 + IAI47_20405 0.53 -0.3
321,085 + IAI47_20405 0.53 -1.0
321,086 - IAI47_20405 0.53 +1.3
321,086 - IAI47_20405 0.53 +0.1
321,086 - IAI47_20405 0.53 +1.2
321,086 - IAI47_20405 0.53 -1.1
321,120 - IAI47_20405 0.55 -0.3
321,128 + IAI47_20405 0.55 +1.3
321,128 + IAI47_20405 0.55 -1.0
321,129 - IAI47_20405 0.55 -3.0

Or see this region's nucleotide sequence