Strain Fitness in Pantoea sp. MT58 around IAI47_19815

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19810 and IAI47_19815 are separated by 163 nucleotidesIAI47_19815 and IAI47_19820 are separated by 685 nucleotides IAI47_19810: IAI47_19810 - substrate-binding domain-containing protein, at 188,031 to 188,954 _19810 IAI47_19815: IAI47_19815 - hypothetical protein, at 189,118 to 189,465 _19815 IAI47_19820: IAI47_19820 - MCP four helix bundle domain-containing protein, at 190,151 to 191,770 _19820 Position (kb) 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 188.124 kb on - strand, within IAI47_19810at 188.135 kb on + strand, within IAI47_19810at 188.135 kb on + strand, within IAI47_19810at 188.135 kb on + strand, within IAI47_19810at 188.136 kb on - strand, within IAI47_19810at 188.136 kb on - strand, within IAI47_19810at 188.136 kb on - strand, within IAI47_19810at 188.255 kb on + strand, within IAI47_19810at 188.255 kb on + strand, within IAI47_19810at 188.256 kb on - strand, within IAI47_19810at 188.280 kb on - strand, within IAI47_19810at 188.280 kb on - strand, within IAI47_19810at 188.297 kb on + strand, within IAI47_19810at 188.298 kb on - strand, within IAI47_19810at 188.298 kb on - strand, within IAI47_19810at 188.298 kb on - strand, within IAI47_19810at 188.311 kb on + strand, within IAI47_19810at 188.311 kb on + strand, within IAI47_19810at 188.311 kb on + strand, within IAI47_19810at 188.312 kb on - strand, within IAI47_19810at 188.393 kb on + strand, within IAI47_19810at 188.393 kb on + strand, within IAI47_19810at 188.394 kb on - strand, within IAI47_19810at 188.394 kb on - strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.400 kb on + strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.401 kb on - strand, within IAI47_19810at 188.466 kb on + strand, within IAI47_19810at 188.466 kb on + strand, within IAI47_19810at 188.466 kb on + strand, within IAI47_19810at 188.466 kb on + strand, within IAI47_19810at 188.467 kb on - strand, within IAI47_19810at 188.467 kb on - strand, within IAI47_19810at 188.474 kb on + strand, within IAI47_19810at 188.474 kb on + strand, within IAI47_19810at 188.474 kb on + strand, within IAI47_19810at 188.474 kb on + strand, within IAI47_19810at 188.475 kb on - strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.479 kb on + strand, within IAI47_19810at 188.480 kb on - strand, within IAI47_19810at 188.480 kb on - strand, within IAI47_19810at 188.480 kb on - strand, within IAI47_19810at 188.485 kb on + strand, within IAI47_19810at 188.485 kb on + strand, within IAI47_19810at 188.526 kb on - strand, within IAI47_19810at 188.552 kb on + strand, within IAI47_19810at 188.552 kb on + strand, within IAI47_19810at 188.553 kb on - strand, within IAI47_19810at 188.556 kb on + strand, within IAI47_19810at 188.557 kb on - strand, within IAI47_19810at 188.557 kb on - strand, within IAI47_19810at 188.557 kb on - strand, within IAI47_19810at 188.557 kb on - strand, within IAI47_19810at 188.558 kb on + strand, within IAI47_19810at 188.559 kb on - strand, within IAI47_19810at 188.559 kb on - strand, within IAI47_19810at 188.573 kb on + strand, within IAI47_19810at 188.639 kb on - strand, within IAI47_19810at 188.639 kb on - strand, within IAI47_19810at 188.639 kb on - strand, within IAI47_19810at 188.699 kb on + strand, within IAI47_19810at 188.700 kb on - strand, within IAI47_19810at 188.731 kb on + strand, within IAI47_19810at 188.777 kb on + strand, within IAI47_19810at 188.778 kb on - strand, within IAI47_19810at 188.802 kb on - strand, within IAI47_19810at 188.886 kb on - strandat 188.898 kb on + strandat 188.898 kb on + strandat 188.898 kb on + strandat 188.899 kb on - strandat 188.899 kb on - strandat 188.909 kb on + strandat 188.909 kb on + strandat 188.952 kb on + strandat 188.952 kb on + strandat 188.953 kb on - strandat 188.974 kb on + strandat 188.974 kb on + strandat 188.975 kb on - strandat 189.030 kb on + strandat 189.030 kb on + strandat 189.030 kb on + strandat 189.030 kb on + strandat 189.030 kb on + strandat 189.031 kb on - strandat 189.031 kb on - strandat 189.040 kb on + strandat 189.040 kb on + strandat 189.041 kb on - strandat 189.041 kb on - strandat 189.041 kb on - strandat 189.119 kb on + strandat 189.135 kb on + strandat 189.135 kb on + strandat 189.135 kb on + strandat 189.136 kb on - strandat 189.136 kb on - strandat 189.162 kb on + strand, within IAI47_19815at 189.162 kb on + strand, within IAI47_19815at 189.163 kb on - strand, within IAI47_19815at 189.163 kb on - strand, within IAI47_19815at 189.164 kb on + strand, within IAI47_19815at 189.164 kb on + strand, within IAI47_19815at 189.165 kb on - strand, within IAI47_19815at 189.165 kb on - strand, within IAI47_19815at 189.174 kb on + strand, within IAI47_19815at 189.235 kb on - strand, within IAI47_19815at 189.289 kb on + strand, within IAI47_19815at 189.289 kb on + strand, within IAI47_19815at 189.290 kb on - strand, within IAI47_19815at 189.290 kb on - strand, within IAI47_19815at 189.319 kb on + strand, within IAI47_19815at 189.319 kb on + strand, within IAI47_19815at 189.319 kb on + strand, within IAI47_19815at 189.319 kb on + strand, within IAI47_19815at 189.320 kb on - strand, within IAI47_19815at 189.320 kb on - strand, within IAI47_19815at 189.320 kb on - strand, within IAI47_19815at 189.320 kb on - strand, within IAI47_19815at 189.320 kb on - strand, within IAI47_19815at 189.320 kb on - strand, within IAI47_19815at 189.324 kb on + strand, within IAI47_19815at 189.325 kb on - strand, within IAI47_19815at 189.361 kb on - strand, within IAI47_19815at 189.397 kb on - strand, within IAI47_19815at 189.416 kb on + strand, within IAI47_19815at 189.416 kb on + strand, within IAI47_19815at 189.417 kb on - strand, within IAI47_19815at 189.417 kb on - strand, within IAI47_19815at 189.443 kb on + strandat 189.443 kb on + strandat 189.443 kb on + strandat 189.443 kb on + strandat 189.444 kb on - strandat 189.444 kb on - strandat 189.459 kb on + strandat 189.459 kb on + strandat 189.460 kb on - strandat 189.460 kb on - strandat 189.465 kb on + strandat 189.465 kb on + strandat 189.465 kb on + strandat 189.465 kb on + strandat 189.465 kb on + strandat 189.466 kb on - strandat 189.466 kb on - strandat 189.466 kb on - strandat 189.490 kb on + strandat 189.490 kb on + strandat 189.491 kb on - strandat 189.493 kb on + strandat 189.493 kb on + strandat 189.493 kb on + strandat 189.494 kb on - strandat 189.553 kb on + strandat 189.589 kb on + strandat 189.593 kb on + strandat 189.594 kb on - strandat 189.596 kb on + strandat 189.596 kb on + strandat 189.596 kb on + strandat 189.597 kb on - strandat 189.614 kb on + strandat 189.615 kb on - strandat 189.615 kb on - strandat 189.617 kb on + strandat 189.629 kb on + strandat 189.664 kb on - strandat 189.664 kb on - strandat 189.689 kb on + strandat 189.689 kb on + strandat 189.689 kb on + strandat 189.690 kb on - strandat 189.710 kb on + strandat 189.711 kb on - strandat 189.714 kb on + strandat 189.715 kb on - strandat 189.715 kb on - strandat 189.715 kb on - strandat 189.715 kb on - strandat 189.715 kb on - strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.722 kb on + strandat 189.723 kb on - strandat 189.723 kb on - strandat 189.723 kb on - strandat 189.727 kb on - strandat 189.757 kb on + strandat 189.776 kb on + strandat 189.776 kb on + strandat 189.777 kb on - strandat 189.777 kb on - strandat 189.782 kb on + strandat 189.789 kb on + strandat 189.800 kb on + strandat 189.800 kb on + strandat 189.801 kb on - strandat 189.801 kb on - strandat 189.830 kb on + strandat 189.830 kb on + strandat 189.830 kb on + strandat 189.839 kb on - strandat 189.886 kb on + strandat 189.887 kb on - strandat 189.933 kb on + strandat 189.933 kb on + strandat 189.933 kb on + strandat 189.933 kb on + strandat 189.933 kb on + strandat 189.933 kb on + strandat 189.934 kb on - strandat 189.934 kb on - strandat 189.934 kb on - strandat 189.964 kb on + strandat 189.965 kb on - strandat 189.980 kb on + strandat 189.981 kb on - strandat 189.998 kb on + strandat 189.998 kb on + strandat 189.998 kb on + strandat 189.999 kb on - strandat 189.999 kb on - strandat 189.999 kb on - strandat 190.048 kb on + strandat 190.099 kb on - strandat 190.123 kb on + strandat 190.140 kb on - strandat 190.165 kb on - strandat 190.165 kb on - strandat 190.165 kb on - strandat 190.165 kb on - strandat 190.169 kb on + strandat 190.169 kb on + strandat 190.170 kb on - strandat 190.299 kb on - strandat 190.299 kb on - strandat 190.340 kb on - strand, within IAI47_19820at 190.348 kb on + strand, within IAI47_19820at 190.348 kb on + strand, within IAI47_19820at 190.348 kb on + strand, within IAI47_19820at 190.351 kb on + strand, within IAI47_19820at 190.351 kb on + strand, within IAI47_19820at 190.352 kb on - strand, within IAI47_19820at 190.352 kb on - strand, within IAI47_19820at 190.364 kb on - strand, within IAI47_19820

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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188,124 - IAI47_19810 0.10 +0.6
188,135 + IAI47_19810 0.11 -0.2
188,135 + IAI47_19810 0.11 -0.1
188,135 + IAI47_19810 0.11 +3.3
188,136 - IAI47_19810 0.11 +1.2
188,136 - IAI47_19810 0.11 +0.1
188,136 - IAI47_19810 0.11 +1.1
188,255 + IAI47_19810 0.24 +0.1
188,255 + IAI47_19810 0.24 -1.5
188,256 - IAI47_19810 0.24 +0.5
188,280 - IAI47_19810 0.27 -0.9
188,280 - IAI47_19810 0.27 -0.7
188,297 + IAI47_19810 0.29 -0.1
188,298 - IAI47_19810 0.29 +0.8
188,298 - IAI47_19810 0.29 +0.2
188,298 - IAI47_19810 0.29 -1.3
188,311 + IAI47_19810 0.30 +0.1
188,311 + IAI47_19810 0.30 +0.1
188,311 + IAI47_19810 0.30 -1.1
188,312 - IAI47_19810 0.30 -1.3
188,393 + IAI47_19810 0.39 +1.1
188,393 + IAI47_19810 0.39 +2.1
188,394 - IAI47_19810 0.39 +0.8
188,394 - IAI47_19810 0.39 +0.6
188,400 + IAI47_19810 0.40 +0.5
188,400 + IAI47_19810 0.40 +1.0
188,400 + IAI47_19810 0.40 -0.3
188,400 + IAI47_19810 0.40 +1.1
188,400 + IAI47_19810 0.40 -0.1
188,400 + IAI47_19810 0.40 +1.4
188,400 + IAI47_19810 0.40 -1.9
188,400 + IAI47_19810 0.40 -1.8
188,400 + IAI47_19810 0.40 -0.4
188,400 + IAI47_19810 0.40 +0.2
188,400 + IAI47_19810 0.40 +0.7
188,400 + IAI47_19810 0.40 +0.8
188,400 + IAI47_19810 0.40 -1.6
188,400 + IAI47_19810 0.40 -2.0
188,400 + IAI47_19810 0.40 +1.1
188,400 + IAI47_19810 0.40 -0.1
188,400 + IAI47_19810 0.40 -0.5
188,400 + IAI47_19810 0.40 -1.7
188,401 - IAI47_19810 0.40 -0.5
188,401 - IAI47_19810 0.40 +1.4
188,401 - IAI47_19810 0.40 +1.9
188,401 - IAI47_19810 0.40 -1.4
188,401 - IAI47_19810 0.40 +0.1
188,401 - IAI47_19810 0.40 -0.6
188,401 - IAI47_19810 0.40 +1.6
188,401 - IAI47_19810 0.40 -1.6
188,401 - IAI47_19810 0.40 +0.4
188,401 - IAI47_19810 0.40 +0.0
188,401 - IAI47_19810 0.40 +0.5
188,401 - IAI47_19810 0.40 +0.3
188,401 - IAI47_19810 0.40 +0.9
188,401 - IAI47_19810 0.40 +0.4
188,401 - IAI47_19810 0.40 +0.8
188,401 - IAI47_19810 0.40 -1.3
188,401 - IAI47_19810 0.40 -1.3
188,401 - IAI47_19810 0.40 -0.7
188,401 - IAI47_19810 0.40 +0.2
188,466 + IAI47_19810 0.47 +0.8
188,466 + IAI47_19810 0.47 -0.3
188,466 + IAI47_19810 0.47 +1.3
188,466 + IAI47_19810 0.47 -0.5
188,467 - IAI47_19810 0.47 +0.4
188,467 - IAI47_19810 0.47 +0.8
188,474 + IAI47_19810 0.48 +0.7
188,474 + IAI47_19810 0.48 -0.2
188,474 + IAI47_19810 0.48 -1.8
188,474 + IAI47_19810 0.48 +0.7
188,475 - IAI47_19810 0.48 -0.1
188,479 + IAI47_19810 0.48 +1.1
188,479 + IAI47_19810 0.48 +0.9
188,479 + IAI47_19810 0.48 -0.1
188,479 + IAI47_19810 0.48 -1.4
188,479 + IAI47_19810 0.48 -0.2
188,479 + IAI47_19810 0.48 -0.8
188,479 + IAI47_19810 0.48 +0.6
188,480 - IAI47_19810 0.49 +0.1
188,480 - IAI47_19810 0.49 -1.8
188,480 - IAI47_19810 0.49 +1.7
188,485 + IAI47_19810 0.49 +1.3
188,485 + IAI47_19810 0.49 +1.1
188,526 - IAI47_19810 0.54 +1.3
188,552 + IAI47_19810 0.56 +0.2
188,552 + IAI47_19810 0.56 +0.2
188,553 - IAI47_19810 0.56 +1.3
188,556 + IAI47_19810 0.57 -1.7
188,557 - IAI47_19810 0.57 -0.6
188,557 - IAI47_19810 0.57 -1.7
188,557 - IAI47_19810 0.57 +0.5
188,557 - IAI47_19810 0.57 -0.3
188,558 + IAI47_19810 0.57 +3.0
188,559 - IAI47_19810 0.57 +2.4
188,559 - IAI47_19810 0.57 +0.1
188,573 + IAI47_19810 0.59 -1.9
188,639 - IAI47_19810 0.66 +0.4
188,639 - IAI47_19810 0.66 +0.7
188,639 - IAI47_19810 0.66 +0.2
188,699 + IAI47_19810 0.72 -0.5
188,700 - IAI47_19810 0.72 -1.1
188,731 + IAI47_19810 0.76 +1.5
188,777 + IAI47_19810 0.81 +0.4
188,778 - IAI47_19810 0.81 -1.1
188,802 - IAI47_19810 0.83 +1.2
188,886 - +1.7
188,898 + -1.7
188,898 + -1.2
188,898 + -0.2
188,899 - +0.4
188,899 - -1.6
188,909 + -0.8
188,909 + +0.1
188,952 + +1.4
188,952 + +0.7
188,953 - +0.5
188,974 + +1.0
188,974 + +2.4
188,975 - -1.6
189,030 + +2.4
189,030 + -2.2
189,030 + -1.6
189,030 + -1.7
189,030 + +0.3
189,031 - -2.2
189,031 - +0.6
189,040 + +1.9
189,040 + +0.2
189,041 - +1.8
189,041 - +1.5
189,041 - +0.8
189,119 + -0.0
189,135 + -0.2
189,135 + +1.3
189,135 + +1.7
189,136 - -2.8
189,136 - +0.7
189,162 + IAI47_19815 0.13 -1.4
189,162 + IAI47_19815 0.13 -0.6
189,163 - IAI47_19815 0.13 -0.5
189,163 - IAI47_19815 0.13 +2.7
189,164 + IAI47_19815 0.13 +1.3
189,164 + IAI47_19815 0.13 +2.4
189,165 - IAI47_19815 0.14 -0.3
189,165 - IAI47_19815 0.14 -0.6
189,174 + IAI47_19815 0.16 -0.9
189,235 - IAI47_19815 0.34 -0.8
189,289 + IAI47_19815 0.49 +0.1
189,289 + IAI47_19815 0.49 -0.8
189,290 - IAI47_19815 0.49 +1.4
189,290 - IAI47_19815 0.49 -0.8
189,319 + IAI47_19815 0.58 -0.1
189,319 + IAI47_19815 0.58 -1.0
189,319 + IAI47_19815 0.58 +0.2
189,319 + IAI47_19815 0.58 +1.4
189,320 - IAI47_19815 0.58 +0.2
189,320 - IAI47_19815 0.58 -0.2
189,320 - IAI47_19815 0.58 +1.3
189,320 - IAI47_19815 0.58 -1.9
189,320 - IAI47_19815 0.58 +1.6
189,320 - IAI47_19815 0.58 +4.7
189,324 + IAI47_19815 0.59 +1.8
189,325 - IAI47_19815 0.59 -0.9
189,361 - IAI47_19815 0.70 -1.9
189,397 - IAI47_19815 0.80 +2.3
189,416 + IAI47_19815 0.86 +0.9
189,416 + IAI47_19815 0.86 +1.6
189,417 - IAI47_19815 0.86 +0.5
189,417 - IAI47_19815 0.86 +1.5
189,443 + +0.1
189,443 + +1.9
189,443 + -1.8
189,443 + +0.8
189,444 - +1.1
189,444 - +0.9
189,459 + +2.2
189,459 + +1.6
189,460 - -0.4
189,460 - -0.4
189,465 + +0.9
189,465 + +0.8
189,465 + +1.0
189,465 + +1.4
189,465 + +2.1
189,466 - +0.1
189,466 - +2.4
189,466 - +0.4
189,490 + -0.8
189,490 + +2.1
189,491 - -0.6
189,493 + +1.9
189,493 + -1.3
189,493 + -0.1
189,494 - -1.3
189,553 + +0.9
189,589 + -0.4
189,593 + -1.0
189,594 - +1.1
189,596 + +0.5
189,596 + +1.1
189,596 + +0.4
189,597 - -0.8
189,614 + +2.2
189,615 - -0.5
189,615 - +1.3
189,617 + -1.6
189,629 + -1.9
189,664 - -1.3
189,664 - +0.8
189,689 + +1.2
189,689 + -1.5
189,689 + +0.2
189,690 - -1.9
189,710 + +0.3
189,711 - -0.1
189,714 + +0.6
189,715 - -0.9
189,715 - +2.2
189,715 - -1.8
189,715 - +0.2
189,715 - +0.4
189,722 + -0.1
189,722 + +0.6
189,722 + +1.8
189,722 + -1.2
189,722 + +1.8
189,722 + +0.4
189,722 + +0.5
189,722 + +0.1
189,723 - +0.9
189,723 - +0.7
189,723 - +1.2
189,727 - -1.8
189,757 + +0.0
189,776 + -1.9
189,776 + +0.6
189,777 - -0.6
189,777 - -0.1
189,782 + -2.4
189,789 + -0.5
189,800 + -0.6
189,800 + +0.9
189,801 - -0.3
189,801 - +0.1
189,830 + -0.1
189,830 + -2.4
189,830 + -0.3
189,839 - +0.2
189,886 + +2.1
189,887 - -1.4
189,933 + +0.5
189,933 + -0.7
189,933 + +0.7
189,933 + -0.8
189,933 + -0.8
189,933 + -0.8
189,934 - -2.4
189,934 - -0.2
189,934 - +1.7
189,964 + -2.8
189,965 - -0.2
189,980 + -0.6
189,981 - +0.7
189,998 + +1.8
189,998 + -1.2
189,998 + +0.2
189,999 - +1.1
189,999 - +1.6
189,999 - +0.5
190,048 + -2.1
190,099 - +1.0
190,123 + +0.3
190,140 - +0.3
190,165 - -1.8
190,165 - -0.4
190,165 - +0.3
190,165 - +0.9
190,169 + +1.7
190,169 + -0.4
190,170 - -0.0
190,299 - +1.0
190,299 - +1.8
190,340 - IAI47_19820 0.12 +0.2
190,348 + IAI47_19820 0.12 -0.5
190,348 + IAI47_19820 0.12 -1.9
190,348 + IAI47_19820 0.12 +1.2
190,351 + IAI47_19820 0.12 +0.1
190,351 + IAI47_19820 0.12 +1.0
190,352 - IAI47_19820 0.12 -0.4
190,352 - IAI47_19820 0.12 +0.4
190,364 - IAI47_19820 0.13 +1.9

Or see this region's nucleotide sequence