Strain Fitness in Pantoea sp. MT58 around IAI47_09310

Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_09305 and IAI47_09310 are separated by 159 nucleotidesIAI47_09310 and IAI47_09315 overlap by 8 nucleotides IAI47_09305: IAI47_09305 - cyclic di-GMP phosphodiesterase, at 1,960,496 to 1,962,481 _09305 IAI47_09310: IAI47_09310 - YbdD/YjiX family protein, at 1,962,641 to 1,962,931 _09310 IAI47_09315: IAI47_09315 - carbon starvation protein A, at 1,962,924 to 1,964,993 _09315 Position (kb) 1962 1963Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1962.054 kb on + strandat 1962.055 kb on - strand, within IAI47_09305at 1962.301 kb on + strandat 1962.451 kb on - strandat 1962.524 kb on - strandat 1962.529 kb on - strandat 1962.538 kb on - strandat 1962.576 kb on - strandat 1962.699 kb on + strand, within IAI47_09310at 1962.754 kb on + strand, within IAI47_09310at 1962.754 kb on + strand, within IAI47_09310at 1962.754 kb on + strand, within IAI47_09310at 1962.755 kb on - strand, within IAI47_09310at 1962.755 kb on - strand, within IAI47_09310at 1962.755 kb on - strand, within IAI47_09310at 1962.755 kb on - strand, within IAI47_09310at 1962.755 kb on - strand, within IAI47_09310at 1962.755 kb on - strand, within IAI47_09310at 1962.774 kb on + strand, within IAI47_09310at 1962.774 kb on + strand, within IAI47_09310at 1962.795 kb on - strand, within IAI47_09310at 1962.805 kb on + strand, within IAI47_09310at 1962.838 kb on + strand, within IAI47_09310at 1962.871 kb on + strand, within IAI47_09310at 1962.871 kb on + strand, within IAI47_09310at 1962.871 kb on + strand, within IAI47_09310at 1962.872 kb on - strand, within IAI47_09310at 1962.872 kb on - strand, within IAI47_09310at 1962.919 kb on + strandat 1962.919 kb on + strandat 1962.919 kb on + strandat 1962.919 kb on + strandat 1962.919 kb on + strandat 1962.920 kb on - strandat 1962.920 kb on - strandat 1962.920 kb on - strandat 1963.050 kb on - strandat 1963.050 kb on - strandat 1963.062 kb on + strandat 1963.063 kb on - strandat 1963.063 kb on - strandat 1963.163 kb on + strand, within IAI47_09315at 1963.187 kb on + strand, within IAI47_09315at 1963.187 kb on + strand, within IAI47_09315at 1963.187 kb on + strand, within IAI47_09315at 1963.187 kb on + strand, within IAI47_09315at 1963.188 kb on - strand, within IAI47_09315at 1963.238 kb on + strand, within IAI47_09315at 1963.238 kb on + strand, within IAI47_09315at 1963.238 kb on + strand, within IAI47_09315at 1963.239 kb on - strand, within IAI47_09315at 1963.239 kb on - strand, within IAI47_09315at 1963.239 kb on - strand, within IAI47_09315at 1963.373 kb on + strand, within IAI47_09315at 1963.373 kb on + strand, within IAI47_09315at 1963.373 kb on + strand, within IAI47_09315at 1963.374 kb on - strand, within IAI47_09315at 1963.374 kb on - strand, within IAI47_09315at 1963.376 kb on + strand, within IAI47_09315at 1963.376 kb on + strand, within IAI47_09315at 1963.376 kb on + strand, within IAI47_09315at 1963.376 kb on + strand, within IAI47_09315at 1963.376 kb on + strand, within IAI47_09315at 1963.376 kb on + strand, within IAI47_09315at 1963.377 kb on - strand, within IAI47_09315at 1963.377 kb on - strand, within IAI47_09315at 1963.377 kb on - strand, within IAI47_09315at 1963.377 kb on - strand, within IAI47_09315at 1963.377 kb on - strand, within IAI47_09315at 1963.454 kb on + strand, within IAI47_09315at 1963.454 kb on + strand, within IAI47_09315at 1963.455 kb on - strand, within IAI47_09315at 1963.455 kb on - strand, within IAI47_09315at 1963.455 kb on - strand, within IAI47_09315at 1963.458 kb on - strand, within IAI47_09315at 1963.484 kb on + strand, within IAI47_09315at 1963.520 kb on + strand, within IAI47_09315at 1963.521 kb on - strand, within IAI47_09315at 1963.562 kb on + strand, within IAI47_09315at 1963.563 kb on - strand, within IAI47_09315at 1963.563 kb on - strand, within IAI47_09315at 1963.563 kb on - strand, within IAI47_09315at 1963.563 kb on - strand, within IAI47_09315at 1963.566 kb on + strand, within IAI47_09315at 1963.566 kb on + strand, within IAI47_09315at 1963.567 kb on - strand, within IAI47_09315at 1963.567 kb on - strand, within IAI47_09315at 1963.635 kb on - strand, within IAI47_09315at 1963.637 kb on + strand, within IAI47_09315at 1963.637 kb on + strand, within IAI47_09315at 1963.637 kb on + strand, within IAI47_09315at 1963.637 kb on + strand, within IAI47_09315at 1963.637 kb on + strand, within IAI47_09315at 1963.637 kb on + strand, within IAI47_09315at 1963.637 kb on + strand, within IAI47_09315at 1963.637 kb on + strand, within IAI47_09315at 1963.638 kb on - strand, within IAI47_09315at 1963.640 kb on + strand, within IAI47_09315at 1963.641 kb on - strand, within IAI47_09315at 1963.641 kb on - strand, within IAI47_09315at 1963.664 kb on + strand, within IAI47_09315at 1963.664 kb on + strand, within IAI47_09315at 1963.664 kb on + strand, within IAI47_09315at 1963.664 kb on + strand, within IAI47_09315at 1963.664 kb on + strand, within IAI47_09315at 1963.664 kb on + strand, within IAI47_09315at 1963.665 kb on - strand, within IAI47_09315at 1963.665 kb on - strand, within IAI47_09315at 1963.761 kb on - strand, within IAI47_09315at 1963.790 kb on + strand, within IAI47_09315at 1963.791 kb on - strand, within IAI47_09315at 1963.791 kb on - strand, within IAI47_09315at 1963.825 kb on + strand, within IAI47_09315at 1963.826 kb on - strand, within IAI47_09315at 1963.916 kb on + strand, within IAI47_09315at 1963.917 kb on - strand, within IAI47_09315

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,962,054 + -0.1
1,962,055 - IAI47_09305 0.78 +2.8
1,962,301 + +0.5
1,962,451 - +0.1
1,962,524 - -1.1
1,962,529 - +0.9
1,962,538 - +1.3
1,962,576 - -0.9
1,962,699 + IAI47_09310 0.20 +0.9
1,962,754 + IAI47_09310 0.39 -0.8
1,962,754 + IAI47_09310 0.39 -0.6
1,962,754 + IAI47_09310 0.39 -1.8
1,962,755 - IAI47_09310 0.39 +1.4
1,962,755 - IAI47_09310 0.39 -1.9
1,962,755 - IAI47_09310 0.39 +0.9
1,962,755 - IAI47_09310 0.39 -2.4
1,962,755 - IAI47_09310 0.39 +0.9
1,962,755 - IAI47_09310 0.39 +0.7
1,962,774 + IAI47_09310 0.46 +1.1
1,962,774 + IAI47_09310 0.46 +0.4
1,962,795 - IAI47_09310 0.53 -2.5
1,962,805 + IAI47_09310 0.56 -2.0
1,962,838 + IAI47_09310 0.68 -0.7
1,962,871 + IAI47_09310 0.79 +0.1
1,962,871 + IAI47_09310 0.79 -1.5
1,962,871 + IAI47_09310 0.79 -0.5
1,962,872 - IAI47_09310 0.79 -0.1
1,962,872 - IAI47_09310 0.79 -2.4
1,962,919 + -0.9
1,962,919 + +1.0
1,962,919 + +0.5
1,962,919 + +1.3
1,962,919 + +1.1
1,962,920 - -0.1
1,962,920 - +0.3
1,962,920 - +0.2
1,963,050 - +0.6
1,963,050 - +0.0
1,963,062 + -0.2
1,963,063 - -1.9
1,963,063 - +0.0
1,963,163 + IAI47_09315 0.12 -0.2
1,963,187 + IAI47_09315 0.13 +2.1
1,963,187 + IAI47_09315 0.13 -0.3
1,963,187 + IAI47_09315 0.13 +0.4
1,963,187 + IAI47_09315 0.13 -1.6
1,963,188 - IAI47_09315 0.13 +0.9
1,963,238 + IAI47_09315 0.15 -0.8
1,963,238 + IAI47_09315 0.15 -0.5
1,963,238 + IAI47_09315 0.15 -2.0
1,963,239 - IAI47_09315 0.15 +0.3
1,963,239 - IAI47_09315 0.15 -0.9
1,963,239 - IAI47_09315 0.15 +1.7
1,963,373 + IAI47_09315 0.22 -1.4
1,963,373 + IAI47_09315 0.22 -0.3
1,963,373 + IAI47_09315 0.22 -0.2
1,963,374 - IAI47_09315 0.22 +1.9
1,963,374 - IAI47_09315 0.22 +1.7
1,963,376 + IAI47_09315 0.22 +2.2
1,963,376 + IAI47_09315 0.22 +0.5
1,963,376 + IAI47_09315 0.22 -1.6
1,963,376 + IAI47_09315 0.22 -1.5
1,963,376 + IAI47_09315 0.22 +0.8
1,963,376 + IAI47_09315 0.22 -1.1
1,963,377 - IAI47_09315 0.22 -2.4
1,963,377 - IAI47_09315 0.22 -0.1
1,963,377 - IAI47_09315 0.22 -3.1
1,963,377 - IAI47_09315 0.22 -0.6
1,963,377 - IAI47_09315 0.22 +0.0
1,963,454 + IAI47_09315 0.26 -0.1
1,963,454 + IAI47_09315 0.26 +0.2
1,963,455 - IAI47_09315 0.26 -0.3
1,963,455 - IAI47_09315 0.26 -0.5
1,963,455 - IAI47_09315 0.26 +0.9
1,963,458 - IAI47_09315 0.26 -1.7
1,963,484 + IAI47_09315 0.27 +2.9
1,963,520 + IAI47_09315 0.29 -1.9
1,963,521 - IAI47_09315 0.29 -0.3
1,963,562 + IAI47_09315 0.31 -0.1
1,963,563 - IAI47_09315 0.31 -1.6
1,963,563 - IAI47_09315 0.31 -0.6
1,963,563 - IAI47_09315 0.31 +2.8
1,963,563 - IAI47_09315 0.31 -1.2
1,963,566 + IAI47_09315 0.31 -1.4
1,963,566 + IAI47_09315 0.31 +0.1
1,963,567 - IAI47_09315 0.31 +0.9
1,963,567 - IAI47_09315 0.31 -0.8
1,963,635 - IAI47_09315 0.34 -2.1
1,963,637 + IAI47_09315 0.34 -1.0
1,963,637 + IAI47_09315 0.34 +1.3
1,963,637 + IAI47_09315 0.34 +0.2
1,963,637 + IAI47_09315 0.34 +0.1
1,963,637 + IAI47_09315 0.34 +1.3
1,963,637 + IAI47_09315 0.34 -0.5
1,963,637 + IAI47_09315 0.34 -0.2
1,963,637 + IAI47_09315 0.34 -1.7
1,963,638 - IAI47_09315 0.34 -2.5
1,963,640 + IAI47_09315 0.35 +3.0
1,963,641 - IAI47_09315 0.35 -1.1
1,963,641 - IAI47_09315 0.35 -0.4
1,963,664 + IAI47_09315 0.36 +0.2
1,963,664 + IAI47_09315 0.36 +1.0
1,963,664 + IAI47_09315 0.36 -0.8
1,963,664 + IAI47_09315 0.36 +0.8
1,963,664 + IAI47_09315 0.36 +1.5
1,963,664 + IAI47_09315 0.36 +0.5
1,963,665 - IAI47_09315 0.36 -0.1
1,963,665 - IAI47_09315 0.36 +1.5
1,963,761 - IAI47_09315 0.40 -0.1
1,963,790 + IAI47_09315 0.42 +2.3
1,963,791 - IAI47_09315 0.42 +0.0
1,963,791 - IAI47_09315 0.42 +0.4
1,963,825 + IAI47_09315 0.44 +1.0
1,963,826 - IAI47_09315 0.44 -1.0
1,963,916 + IAI47_09315 0.48 +0.2
1,963,917 - IAI47_09315 0.48 -2.2

Or see this region's nucleotide sequence