Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19485 and IAI47_19490 are separated by 292 nucleotides IAI47_19490 and IAI47_19495 are separated by 549 nucleotides
IAI47_19485: IAI47_19485 - glycoside hydrolase family 10 protein, at 126,922 to 128,265
_19485
IAI47_19490: IAI47_19490 - DUF4102 domain-containing protein, at 128,558 to 128,740
_19490
IAI47_19495: IAI47_19495 - hypothetical protein, at 129,290 to 129,571
_19495
Position (kb) 128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 127.593 kb on + strand, within IAI47_19485 at 127.594 kb on - strand, within IAI47_19485 at 127.654 kb on + strand, within IAI47_19485 at 127.654 kb on + strand, within IAI47_19485 at 127.654 kb on + strand, within IAI47_19485 at 127.654 kb on + strand, within IAI47_19485 at 127.655 kb on - strand, within IAI47_19485 at 127.660 kb on + strand, within IAI47_19485 at 127.661 kb on - strand, within IAI47_19485 at 127.692 kb on + strand, within IAI47_19485 at 127.692 kb on + strand, within IAI47_19485 at 127.692 kb on + strand, within IAI47_19485 at 127.711 kb on + strand, within IAI47_19485 at 127.755 kb on + strand, within IAI47_19485 at 127.755 kb on + strand, within IAI47_19485 at 127.779 kb on - strand, within IAI47_19485 at 127.779 kb on - strand, within IAI47_19485 at 127.791 kb on + strand, within IAI47_19485 at 127.894 kb on + strand, within IAI47_19485 at 127.895 kb on - strand, within IAI47_19485 at 127.948 kb on + strand, within IAI47_19485 at 127.948 kb on + strand, within IAI47_19485 at 127.948 kb on + strand, within IAI47_19485 at 127.949 kb on - strand, within IAI47_19485 at 127.966 kb on + strand, within IAI47_19485 at 127.966 kb on + strand, within IAI47_19485 at 127.967 kb on - strand, within IAI47_19485 at 128.053 kb on + strand, within IAI47_19485 at 128.053 kb on + strand, within IAI47_19485 at 128.053 kb on + strand, within IAI47_19485 at 128.053 kb on + strand, within IAI47_19485 at 128.053 kb on + strand, within IAI47_19485 at 128.053 kb on + strand, within IAI47_19485 at 128.053 kb on + strand, within IAI47_19485 at 128.053 kb on + strand, within IAI47_19485 at 128.053 kb on + strand, within IAI47_19485 at 128.054 kb on - strand, within IAI47_19485 at 128.054 kb on - strand, within IAI47_19485 at 128.054 kb on - strand, within IAI47_19485 at 128.054 kb on - strand, within IAI47_19485 at 128.054 kb on - strand, within IAI47_19485 at 128.054 kb on - strand, within IAI47_19485 at 128.055 kb on + strand, within IAI47_19485 at 128.055 kb on + strand, within IAI47_19485 at 128.055 kb on + strand, within IAI47_19485 at 128.055 kb on + strand, within IAI47_19485 at 128.071 kb on + strand at 128.172 kb on + strand at 128.203 kb on + strand at 128.203 kb on + strand at 128.204 kb on - strand at 128.204 kb on - strand at 128.239 kb on + strand at 128.239 kb on + strand at 128.244 kb on + strand at 128.245 kb on - strand at 128.245 kb on - strand at 128.322 kb on - strand at 128.332 kb on + strand at 128.332 kb on + strand at 128.333 kb on - strand at 128.333 kb on - strand at 128.333 kb on - strand at 128.334 kb on + strand at 128.334 kb on + strand at 128.334 kb on + strand at 128.334 kb on + strand at 128.334 kb on + strand at 128.335 kb on - strand at 128.335 kb on - strand at 128.336 kb on + strand at 128.336 kb on + strand at 128.336 kb on + strand at 128.337 kb on - strand at 128.346 kb on + strand at 128.346 kb on + strand at 128.347 kb on - strand at 128.347 kb on - strand at 128.382 kb on + strand at 128.384 kb on - strand at 128.384 kb on - strand at 128.385 kb on + strand at 128.386 kb on - strand at 128.397 kb on - strand at 128.424 kb on - strand at 128.440 kb on + strand at 128.483 kb on - strand at 128.488 kb on + strand at 128.488 kb on + strand at 128.489 kb on - strand at 128.492 kb on + strand at 128.492 kb on + strand at 128.492 kb on + strand at 128.492 kb on + strand at 128.493 kb on - strand at 128.493 kb on - strand at 128.493 kb on - strand at 128.493 kb on - strand at 128.493 kb on - strand at 128.493 kb on - strand at 128.493 kb on - strand at 128.493 kb on - strand at 128.493 kb on - strand at 128.500 kb on + strand at 128.500 kb on + strand at 128.500 kb on + strand at 128.500 kb on + strand at 128.500 kb on + strand at 128.501 kb on - strand at 128.501 kb on - strand at 128.501 kb on - strand at 128.501 kb on - strand at 128.501 kb on - strand at 128.501 kb on - strand at 128.501 kb on - strand at 128.504 kb on + strand at 128.504 kb on + strand at 128.504 kb on + strand at 128.504 kb on + strand at 128.505 kb on - strand at 128.527 kb on + strand at 128.527 kb on + strand at 128.527 kb on + strand at 128.527 kb on + strand at 128.527 kb on + strand at 128.528 kb on - strand at 128.528 kb on - strand at 128.528 kb on - strand at 128.528 kb on - strand at 128.528 kb on - strand at 128.528 kb on - strand at 128.528 kb on - strand at 128.530 kb on - strand at 128.573 kb on + strand at 128.574 kb on - strand at 128.574 kb on - strand at 128.610 kb on + strand, within IAI47_19490 at 128.610 kb on + strand, within IAI47_19490 at 128.611 kb on - strand, within IAI47_19490 at 128.611 kb on - strand, within IAI47_19490 at 128.611 kb on - strand, within IAI47_19490 at 128.629 kb on + strand, within IAI47_19490 at 128.652 kb on - strand, within IAI47_19490 at 128.699 kb on + strand, within IAI47_19490 at 128.699 kb on + strand, within IAI47_19490 at 128.699 kb on + strand, within IAI47_19490 at 128.699 kb on + strand, within IAI47_19490 at 128.699 kb on + strand, within IAI47_19490 at 128.699 kb on + strand, within IAI47_19490 at 128.699 kb on + strand, within IAI47_19490 at 128.699 kb on + strand, within IAI47_19490 at 128.699 kb on + strand, within IAI47_19490 at 128.700 kb on - strand, within IAI47_19490 at 128.700 kb on - strand, within IAI47_19490 at 128.700 kb on - strand, within IAI47_19490 at 128.700 kb on - strand, within IAI47_19490 at 128.700 kb on - strand, within IAI47_19490 at 128.700 kb on - strand, within IAI47_19490 at 128.700 kb on - strand, within IAI47_19490 at 128.712 kb on + strand, within IAI47_19490 at 128.713 kb on - strand, within IAI47_19490 at 128.713 kb on - strand, within IAI47_19490 at 128.738 kb on + strand at 128.762 kb on + strand at 128.762 kb on + strand at 128.842 kb on + strand at 128.842 kb on + strand at 128.842 kb on + strand at 128.843 kb on - strand at 128.843 kb on - strand at 128.856 kb on + strand at 128.857 kb on - strand at 128.867 kb on - strand at 128.867 kb on - strand at 128.893 kb on + strand at 128.893 kb on + strand at 128.893 kb on + strand at 128.894 kb on - strand at 128.902 kb on + strand at 128.909 kb on + strand at 128.911 kb on - strand at 128.950 kb on + strand at 128.950 kb on + strand at 129.078 kb on + strand at 129.186 kb on - strand at 129.186 kb on - strand at 129.313 kb on + strand at 129.314 kb on - strand at 129.349 kb on + strand, within IAI47_19495 at 129.349 kb on + strand, within IAI47_19495 at 129.350 kb on - strand, within IAI47_19495 at 129.350 kb on - strand, within IAI47_19495 at 129.354 kb on + strand, within IAI47_19495 at 129.354 kb on + strand, within IAI47_19495 at 129.355 kb on - strand, within IAI47_19495 at 129.364 kb on - strand, within IAI47_19495 at 129.443 kb on - strand, within IAI47_19495 at 129.448 kb on + strand, within IAI47_19495 at 129.448 kb on + strand, within IAI47_19495 at 129.448 kb on + strand, within IAI47_19495 at 129.449 kb on - strand, within IAI47_19495 at 129.449 kb on - strand, within IAI47_19495 at 129.449 kb on - strand, within IAI47_19495 at 129.453 kb on + strand, within IAI47_19495 at 129.453 kb on + strand, within IAI47_19495 at 129.453 kb on + strand, within IAI47_19495 at 129.453 kb on + strand, within IAI47_19495 at 129.454 kb on - strand, within IAI47_19495 at 129.454 kb on - strand, within IAI47_19495 at 129.493 kb on + strand, within IAI47_19495 at 129.493 kb on + strand, within IAI47_19495 at 129.493 kb on + strand, within IAI47_19495 at 129.494 kb on - strand, within IAI47_19495 at 129.494 kb on - strand, within IAI47_19495 at 129.494 kb on - strand, within IAI47_19495 at 129.505 kb on + strand, within IAI47_19495 at 129.505 kb on + strand, within IAI47_19495 at 129.506 kb on - strand, within IAI47_19495 at 129.506 kb on - strand, within IAI47_19495 at 129.527 kb on + strand, within IAI47_19495 at 129.528 kb on - strand, within IAI47_19495 at 129.561 kb on - strand at 129.563 kb on + strand at 129.563 kb on + strand at 129.563 kb on + strand at 129.564 kb on - strand at 129.564 kb on - strand at 129.579 kb on - strand at 129.624 kb on + strand at 129.624 kb on + strand at 129.625 kb on - strand at 129.625 kb on - strand at 129.625 kb on - strand at 129.649 kb on - strand at 129.669 kb on + strand at 129.669 kb on + strand at 129.669 kb on + strand at 129.670 kb on - strand at 129.670 kb on - strand at 129.672 kb on + strand at 129.673 kb on - strand at 129.673 kb on - strand at 129.673 kb on - strand at 129.673 kb on - strand at 129.676 kb on + strand at 129.676 kb on + strand at 129.676 kb on + strand at 129.676 kb on + strand at 129.676 kb on + strand at 129.677 kb on - strand at 129.679 kb on + strand at 129.679 kb on + strand at 129.680 kb on - strand at 129.680 kb on - strand at 129.680 kb on - strand at 129.680 kb on - strand at 129.680 kb on - strand at 129.693 kb on + strand at 129.693 kb on + strand at 129.694 kb on - strand at 129.694 kb on - strand at 129.694 kb on - strand at 129.699 kb on - strand at 129.718 kb on - strand at 129.719 kb on + strand at 129.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 127,593 + IAI47_19485 0.50 -0.7 127,594 - IAI47_19485 0.50 +0.3 127,654 + IAI47_19485 0.54 +0.2 127,654 + IAI47_19485 0.54 +1.8 127,654 + IAI47_19485 0.54 -1.6 127,654 + IAI47_19485 0.54 +1.6 127,655 - IAI47_19485 0.55 +1.5 127,660 + IAI47_19485 0.55 +0.8 127,661 - IAI47_19485 0.55 +0.9 127,692 + IAI47_19485 0.57 -0.8 127,692 + IAI47_19485 0.57 +0.5 127,692 + IAI47_19485 0.57 +0.3 127,711 + IAI47_19485 0.59 +0.9 127,755 + IAI47_19485 0.62 +1.1 127,755 + IAI47_19485 0.62 +0.1 127,779 - IAI47_19485 0.64 -0.4 127,779 - IAI47_19485 0.64 +0.1 127,791 + IAI47_19485 0.65 -0.5 127,894 + IAI47_19485 0.72 -0.7 127,895 - IAI47_19485 0.72 -1.7 127,948 + IAI47_19485 0.76 -0.5 127,948 + IAI47_19485 0.76 -0.2 127,948 + IAI47_19485 0.76 +0.9 127,949 - IAI47_19485 0.76 +2.0 127,966 + IAI47_19485 0.78 +0.1 127,966 + IAI47_19485 0.78 +0.5 127,967 - IAI47_19485 0.78 +2.1 128,053 + IAI47_19485 0.84 +1.7 128,053 + IAI47_19485 0.84 -1.6 128,053 + IAI47_19485 0.84 -0.2 128,053 + IAI47_19485 0.84 -0.6 128,053 + IAI47_19485 0.84 -0.5 128,053 + IAI47_19485 0.84 -0.5 128,053 + IAI47_19485 0.84 -1.6 128,053 + IAI47_19485 0.84 -1.1 128,053 + IAI47_19485 0.84 -1.1 128,054 - IAI47_19485 0.84 +1.3 128,054 - IAI47_19485 0.84 -1.2 128,054 - IAI47_19485 0.84 +0.9 128,054 - IAI47_19485 0.84 +0.8 128,054 - IAI47_19485 0.84 -0.6 128,054 - IAI47_19485 0.84 -1.3 128,055 + IAI47_19485 0.84 +0.9 128,055 + IAI47_19485 0.84 -2.6 128,055 + IAI47_19485 0.84 -0.7 128,055 + IAI47_19485 0.84 -1.4 128,071 + +1.2 128,172 + +1.1 128,203 + -1.1 128,203 + -0.1 128,204 - +0.0 128,204 - -0.6 128,239 + +1.0 128,239 + +0.5 128,244 + -0.2 128,245 - +0.0 128,245 - -0.5 128,322 - +0.1 128,332 + +0.5 128,332 + -1.0 128,333 - +1.9 128,333 - +0.1 128,333 - -0.2 128,334 + -0.5 128,334 + -1.2 128,334 + -1.2 128,334 + -0.7 128,334 + -1.8 128,335 - +0.3 128,335 - -1.7 128,336 + +0.1 128,336 + -0.5 128,336 + -0.7 128,337 - -2.5 128,346 + +0.6 128,346 + +1.7 128,347 - +0.6 128,347 - -0.9 128,382 + -0.0 128,384 - -0.7 128,384 - -1.0 128,385 + -1.4 128,386 - +0.4 128,397 - +0.5 128,424 - -1.9 128,440 + -1.0 128,483 - -0.3 128,488 + -3.5 128,488 + -0.0 128,489 - +0.5 128,492 + -1.9 128,492 + -1.1 128,492 + +2.0 128,492 + -1.1 128,493 - +0.1 128,493 - -0.7 128,493 - +0.3 128,493 - -0.3 128,493 - +2.0 128,493 - +1.0 128,493 - -0.1 128,493 - +1.2 128,493 - +1.5 128,500 + +1.0 128,500 + -1.9 128,500 + +0.1 128,500 + -1.1 128,500 + +0.4 128,501 - +0.7 128,501 - -2.1 128,501 - +0.1 128,501 - -1.6 128,501 - +1.7 128,501 - -0.5 128,501 - -0.2 128,504 + -0.1 128,504 + -0.7 128,504 + +1.5 128,504 + -0.3 128,505 - +0.3 128,527 + +1.3 128,527 + +1.0 128,527 + -1.0 128,527 + -0.3 128,527 + -0.6 128,528 - +0.8 128,528 - +0.0 128,528 - +0.1 128,528 - -1.3 128,528 - -0.7 128,528 - -2.0 128,528 - +0.3 128,530 - -0.5 128,573 + -1.0 128,574 - +1.2 128,574 - +1.6 128,610 + IAI47_19490 0.28 +1.1 128,610 + IAI47_19490 0.28 +1.6 128,611 - IAI47_19490 0.29 +1.0 128,611 - IAI47_19490 0.29 -0.1 128,611 - IAI47_19490 0.29 +1.1 128,629 + IAI47_19490 0.39 -1.3 128,652 - IAI47_19490 0.51 +0.5 128,699 + IAI47_19490 0.77 -1.5 128,699 + IAI47_19490 0.77 -0.4 128,699 + IAI47_19490 0.77 -2.1 128,699 + IAI47_19490 0.77 +1.1 128,699 + IAI47_19490 0.77 -0.3 128,699 + IAI47_19490 0.77 -0.3 128,699 + IAI47_19490 0.77 +0.0 128,699 + IAI47_19490 0.77 -0.7 128,699 + IAI47_19490 0.77 +0.0 128,700 - IAI47_19490 0.78 -0.2 128,700 - IAI47_19490 0.78 +1.1 128,700 - IAI47_19490 0.78 +1.2 128,700 - IAI47_19490 0.78 -1.1 128,700 - IAI47_19490 0.78 -1.0 128,700 - IAI47_19490 0.78 +2.0 128,700 - IAI47_19490 0.78 +1.6 128,712 + IAI47_19490 0.84 +2.1 128,713 - IAI47_19490 0.85 -2.4 128,713 - IAI47_19490 0.85 +1.9 128,738 + +1.0 128,762 + -0.2 128,762 + -0.5 128,842 + -0.2 128,842 + +0.3 128,842 + -0.6 128,843 - +0.8 128,843 - +0.2 128,856 + -0.4 128,857 - +0.7 128,867 - -0.3 128,867 - +1.1 128,893 + +0.8 128,893 + +0.6 128,893 + -0.6 128,894 - +2.8 128,902 + +0.9 128,909 + +0.1 128,911 - +0.1 128,950 + -0.3 128,950 + +0.4 129,078 + -1.1 129,186 - +1.1 129,186 - -0.1 129,313 + -0.3 129,314 - -0.4 129,349 + IAI47_19495 0.21 -1.1 129,349 + IAI47_19495 0.21 +2.1 129,350 - IAI47_19495 0.21 -1.4 129,350 - IAI47_19495 0.21 +2.3 129,354 + IAI47_19495 0.23 -0.0 129,354 + IAI47_19495 0.23 -0.3 129,355 - IAI47_19495 0.23 +0.3 129,364 - IAI47_19495 0.26 -0.2 129,443 - IAI47_19495 0.54 -1.2 129,448 + IAI47_19495 0.56 +0.7 129,448 + IAI47_19495 0.56 +0.8 129,448 + IAI47_19495 0.56 -1.4 129,449 - IAI47_19495 0.56 -3.3 129,449 - IAI47_19495 0.56 -0.8 129,449 - IAI47_19495 0.56 +1.5 129,453 + IAI47_19495 0.58 -0.3 129,453 + IAI47_19495 0.58 -1.9 129,453 + IAI47_19495 0.58 -0.1 129,453 + IAI47_19495 0.58 +0.2 129,454 - IAI47_19495 0.58 -0.4 129,454 - IAI47_19495 0.58 +0.9 129,493 + IAI47_19495 0.72 +1.4 129,493 + IAI47_19495 0.72 -0.5 129,493 + IAI47_19495 0.72 +1.8 129,494 - IAI47_19495 0.72 +1.1 129,494 - IAI47_19495 0.72 +1.6 129,494 - IAI47_19495 0.72 +1.1 129,505 + IAI47_19495 0.76 +0.6 129,505 + IAI47_19495 0.76 -0.8 129,506 - IAI47_19495 0.77 +0.4 129,506 - IAI47_19495 0.77 -0.5 129,527 + IAI47_19495 0.84 -0.6 129,528 - IAI47_19495 0.84 -1.0 129,561 - -0.3 129,563 + -0.5 129,563 + -2.5 129,563 + +2.0 129,564 - +0.0 129,564 - -0.9 129,579 - -2.0 129,624 + +0.6 129,624 + -0.6 129,625 - +0.9 129,625 - -0.6 129,625 - -2.6 129,649 - +0.0 129,669 + +0.6 129,669 + -0.2 129,669 + +0.0 129,670 - +1.1 129,670 - -0.1 129,672 + +0.1 129,673 - +0.4 129,673 - -0.6 129,673 - -0.2 129,673 - +1.5 129,676 + -1.1 129,676 + -1.7 129,676 + -0.7 129,676 + +0.4 129,676 + -0.3 129,677 - +0.1 129,679 + -0.1 129,679 + +0.6 129,680 - -1.0 129,680 - +1.4 129,680 - -0.1 129,680 - +1.9 129,680 - -0.0 129,693 + -1.4 129,693 + +1.5 129,694 - +2.5 129,694 - -0.8 129,694 - +0.2 129,699 - -0.1 129,718 - +0.8 129,719 + -0.1 129,720 - -1.4
Or see this region's nucleotide sequence