Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_10435 and IAI47_10440 are separated by 110 nucleotides IAI47_10440 and IAI47_10445 are separated by 123 nucleotides IAI47_10445 and IAI47_10450 overlap by 1 nucleotides IAI47_10450 and IAI47_10455 overlap by 8 nucleotides
IAI47_10435: IAI47_10435 - transcription modulator YdgT, at 2,212,955 to 2,213,170
_10435
IAI47_10440: IAI47_10440 - DUF2569 domain-containing protein, at 2,213,281 to 2,213,724
_10440
IAI47_10445: IAI47_10445 - electron transport complex subunit RsxA, at 2,213,848 to 2,214,429
_10445
IAI47_10450: IAI47_10450 - electron transport complex subunit RsxB, at 2,214,429 to 2,215,007
_10450
IAI47_10455: IAI47_10455 - electron transport complex subunit RsxC, at 2,215,000 to 2,217,843
_10455
Position (kb)
2213
2214
2215 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2212.913 kb on - strand at 2212.913 kb on - strand at 2212.914 kb on + strand at 2212.915 kb on - strand at 2212.932 kb on + strand at 2212.932 kb on + strand at 2212.932 kb on + strand at 2212.933 kb on - strand at 2212.933 kb on - strand at 2212.938 kb on + strand at 2212.938 kb on + strand at 2212.938 kb on + strand at 2212.939 kb on - strand at 2212.939 kb on - strand at 2212.939 kb on - strand at 2212.942 kb on + strand at 2212.942 kb on + strand at 2212.942 kb on + strand at 2212.943 kb on - strand at 2212.943 kb on - strand at 2212.943 kb on - strand at 2212.943 kb on - strand at 2212.943 kb on - strand at 2212.943 kb on - strand at 2212.946 kb on - strand at 2212.971 kb on - strand at 2212.979 kb on - strand, within IAI47_10435 at 2212.993 kb on - strand, within IAI47_10435 at 2213.032 kb on + strand, within IAI47_10435 at 2213.033 kb on - strand, within IAI47_10435 at 2213.033 kb on - strand, within IAI47_10435 at 2213.036 kb on + strand, within IAI47_10435 at 2213.068 kb on + strand, within IAI47_10435 at 2213.068 kb on + strand, within IAI47_10435 at 2213.068 kb on + strand, within IAI47_10435 at 2213.068 kb on + strand, within IAI47_10435 at 2213.068 kb on + strand, within IAI47_10435 at 2213.068 kb on + strand, within IAI47_10435 at 2213.068 kb on + strand, within IAI47_10435 at 2213.068 kb on + strand, within IAI47_10435 at 2213.069 kb on - strand, within IAI47_10435 at 2213.069 kb on - strand, within IAI47_10435 at 2213.069 kb on - strand, within IAI47_10435 at 2213.069 kb on - strand, within IAI47_10435 at 2213.069 kb on - strand, within IAI47_10435 at 2213.069 kb on - strand, within IAI47_10435 at 2213.121 kb on + strand, within IAI47_10435 at 2213.121 kb on + strand, within IAI47_10435 at 2213.121 kb on + strand, within IAI47_10435 at 2213.122 kb on - strand, within IAI47_10435 at 2213.123 kb on + strand, within IAI47_10435 at 2213.123 kb on + strand, within IAI47_10435 at 2213.123 kb on + strand, within IAI47_10435 at 2213.123 kb on + strand, within IAI47_10435 at 2213.124 kb on - strand, within IAI47_10435 at 2213.124 kb on - strand, within IAI47_10435 at 2213.160 kb on - strand at 2213.184 kb on + strand at 2213.239 kb on + strand at 2213.239 kb on + strand at 2213.239 kb on + strand at 2213.239 kb on + strand at 2213.239 kb on + strand at 2213.240 kb on - strand at 2213.240 kb on - strand at 2213.240 kb on - strand at 2213.273 kb on + strand at 2213.273 kb on + strand at 2213.273 kb on + strand at 2213.273 kb on + strand at 2213.274 kb on - strand at 2213.274 kb on - strand at 2213.274 kb on - strand at 2213.277 kb on + strand at 2213.278 kb on - strand at 2213.278 kb on - strand at 2213.278 kb on - strand at 2213.383 kb on + strand, within IAI47_10440 at 2213.383 kb on + strand, within IAI47_10440 at 2213.383 kb on + strand, within IAI47_10440 at 2213.383 kb on + strand, within IAI47_10440 at 2213.384 kb on - strand, within IAI47_10440 at 2213.384 kb on - strand, within IAI47_10440 at 2213.384 kb on - strand, within IAI47_10440 at 2213.384 kb on - strand, within IAI47_10440 at 2213.384 kb on - strand, within IAI47_10440 at 2213.384 kb on - strand, within IAI47_10440 at 2213.384 kb on - strand, within IAI47_10440 at 2213.384 kb on - strand, within IAI47_10440 at 2213.384 kb on - strand, within IAI47_10440 at 2213.384 kb on - strand, within IAI47_10440 at 2213.384 kb on - strand, within IAI47_10440 at 2213.473 kb on - strand, within IAI47_10440 at 2213.494 kb on + strand, within IAI47_10440 at 2213.494 kb on + strand, within IAI47_10440 at 2213.495 kb on - strand, within IAI47_10440 at 2213.495 kb on - strand, within IAI47_10440 at 2213.495 kb on - strand, within IAI47_10440 at 2213.495 kb on - strand, within IAI47_10440 at 2213.495 kb on - strand, within IAI47_10440 at 2213.495 kb on - strand, within IAI47_10440 at 2213.496 kb on + strand, within IAI47_10440 at 2213.496 kb on + strand, within IAI47_10440 at 2213.496 kb on + strand, within IAI47_10440 at 2213.496 kb on + strand, within IAI47_10440 at 2213.496 kb on + strand, within IAI47_10440 at 2213.497 kb on - strand, within IAI47_10440 at 2213.497 kb on - strand, within IAI47_10440 at 2213.497 kb on - strand, within IAI47_10440 at 2213.497 kb on - strand, within IAI47_10440 at 2213.551 kb on + strand, within IAI47_10440 at 2213.551 kb on + strand, within IAI47_10440 at 2213.551 kb on + strand, within IAI47_10440 at 2213.551 kb on + strand, within IAI47_10440 at 2213.552 kb on - strand, within IAI47_10440 at 2213.552 kb on - strand, within IAI47_10440 at 2213.552 kb on - strand, within IAI47_10440 at 2213.571 kb on + strand, within IAI47_10440 at 2213.571 kb on + strand, within IAI47_10440 at 2213.572 kb on - strand, within IAI47_10440 at 2213.572 kb on - strand, within IAI47_10440 at 2213.580 kb on - strand, within IAI47_10440 at 2213.639 kb on + strand, within IAI47_10440 at 2213.639 kb on + strand, within IAI47_10440 at 2213.640 kb on - strand, within IAI47_10440 at 2213.640 kb on - strand, within IAI47_10440 at 2213.640 kb on - strand, within IAI47_10440 at 2213.640 kb on - strand, within IAI47_10440 at 2213.712 kb on + strand at 2213.713 kb on - strand at 2213.796 kb on + strand at 2213.796 kb on + strand at 2213.796 kb on + strand at 2213.806 kb on + strand at 2213.815 kb on + strand at 2213.815 kb on + strand at 2213.815 kb on + strand at 2213.815 kb on + strand at 2213.815 kb on + strand at 2213.815 kb on + strand at 2213.815 kb on + strand at 2213.815 kb on + strand at 2213.815 kb on + strand at 2214.965 kb on + strand at 2214.995 kb on + strand at 2214.995 kb on + strand at 2214.995 kb on + strand at 2214.995 kb on + strand at 2214.995 kb on + strand at 2214.995 kb on + strand at 2214.995 kb on + strand at 2214.995 kb on + strand at 2214.995 kb on + strand at 2214.995 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 2,212,913 - +0.7 2,212,913 - +1.5 2,212,914 + +0.6 2,212,915 - -2.1 2,212,932 + +0.3 2,212,932 + +1.2 2,212,932 + -2.4 2,212,933 - +1.9 2,212,933 - +0.1 2,212,938 + -0.5 2,212,938 + -0.4 2,212,938 + -1.0 2,212,939 - -0.7 2,212,939 - -2.0 2,212,939 - +1.0 2,212,942 + +0.1 2,212,942 + -0.6 2,212,942 + +0.6 2,212,943 - +1.1 2,212,943 - +0.6 2,212,943 - -1.4 2,212,943 - -0.2 2,212,943 - -2.4 2,212,943 - -1.0 2,212,946 - +0.7 2,212,971 - +0.5 2,212,979 - IAI47_10435 0.11 -1.9 2,212,993 - IAI47_10435 0.18 +0.3 2,213,032 + IAI47_10435 0.36 -0.4 2,213,033 - IAI47_10435 0.36 +2.1 2,213,033 - IAI47_10435 0.36 +0.5 2,213,036 + IAI47_10435 0.38 +0.6 2,213,068 + IAI47_10435 0.52 +1.1 2,213,068 + IAI47_10435 0.52 -0.4 2,213,068 + IAI47_10435 0.52 +0.8 2,213,068 + IAI47_10435 0.52 +0.8 2,213,068 + IAI47_10435 0.52 -1.0 2,213,068 + IAI47_10435 0.52 +2.1 2,213,068 + IAI47_10435 0.52 -0.4 2,213,068 + IAI47_10435 0.52 -0.6 2,213,069 - IAI47_10435 0.53 +0.6 2,213,069 - IAI47_10435 0.53 -1.0 2,213,069 - IAI47_10435 0.53 -1.1 2,213,069 - IAI47_10435 0.53 -1.2 2,213,069 - IAI47_10435 0.53 +1.5 2,213,069 - IAI47_10435 0.53 +2.2 2,213,121 + IAI47_10435 0.77 -2.4 2,213,121 + IAI47_10435 0.77 +1.5 2,213,121 + IAI47_10435 0.77 -0.6 2,213,122 - IAI47_10435 0.77 -0.7 2,213,123 + IAI47_10435 0.78 -1.2 2,213,123 + IAI47_10435 0.78 -0.1 2,213,123 + IAI47_10435 0.78 -0.7 2,213,123 + IAI47_10435 0.78 +1.2 2,213,124 - IAI47_10435 0.78 +0.5 2,213,124 - IAI47_10435 0.78 -1.8 2,213,160 - -0.7 2,213,184 + +1.5 2,213,239 + +0.2 2,213,239 + +3.8 2,213,239 + +0.6 2,213,239 + -1.8 2,213,239 + -0.1 2,213,240 - +0.4 2,213,240 - -0.1 2,213,240 - -0.8 2,213,273 + +0.4 2,213,273 + +0.4 2,213,273 + -1.7 2,213,273 + +1.4 2,213,274 - -0.6 2,213,274 - +1.3 2,213,274 - -0.7 2,213,277 + +1.0 2,213,278 - -3.1 2,213,278 - -0.1 2,213,278 - +0.4 2,213,383 + IAI47_10440 0.23 +0.2 2,213,383 + IAI47_10440 0.23 -2.0 2,213,383 + IAI47_10440 0.23 +0.4 2,213,383 + IAI47_10440 0.23 +1.3 2,213,384 - IAI47_10440 0.23 -0.8 2,213,384 - IAI47_10440 0.23 -1.4 2,213,384 - IAI47_10440 0.23 +1.6 2,213,384 - IAI47_10440 0.23 +0.3 2,213,384 - IAI47_10440 0.23 +0.6 2,213,384 - IAI47_10440 0.23 -0.5 2,213,384 - IAI47_10440 0.23 +0.7 2,213,384 - IAI47_10440 0.23 -1.3 2,213,384 - IAI47_10440 0.23 -1.1 2,213,384 - IAI47_10440 0.23 +0.3 2,213,384 - IAI47_10440 0.23 +1.1 2,213,473 - IAI47_10440 0.43 -0.8 2,213,494 + IAI47_10440 0.48 +0.6 2,213,494 + IAI47_10440 0.48 -0.1 2,213,495 - IAI47_10440 0.48 +0.2 2,213,495 - IAI47_10440 0.48 -0.4 2,213,495 - IAI47_10440 0.48 +0.3 2,213,495 - IAI47_10440 0.48 +0.5 2,213,495 - IAI47_10440 0.48 +1.3 2,213,495 - IAI47_10440 0.48 -0.2 2,213,496 + IAI47_10440 0.48 +0.3 2,213,496 + IAI47_10440 0.48 +0.5 2,213,496 + IAI47_10440 0.48 -0.3 2,213,496 + IAI47_10440 0.48 -0.3 2,213,496 + IAI47_10440 0.48 +0.2 2,213,497 - IAI47_10440 0.49 +0.3 2,213,497 - IAI47_10440 0.49 +0.1 2,213,497 - IAI47_10440 0.49 +1.3 2,213,497 - IAI47_10440 0.49 +1.5 2,213,551 + IAI47_10440 0.61 +0.8 2,213,551 + IAI47_10440 0.61 -1.7 2,213,551 + IAI47_10440 0.61 -1.1 2,213,551 + IAI47_10440 0.61 +0.3 2,213,552 - IAI47_10440 0.61 -0.5 2,213,552 - IAI47_10440 0.61 -0.1 2,213,552 - IAI47_10440 0.61 -0.0 2,213,571 + IAI47_10440 0.65 +1.0 2,213,571 + IAI47_10440 0.65 +1.1 2,213,572 - IAI47_10440 0.66 +1.2 2,213,572 - IAI47_10440 0.66 +2.7 2,213,580 - IAI47_10440 0.67 +0.9 2,213,639 + IAI47_10440 0.81 +0.9 2,213,639 + IAI47_10440 0.81 +0.4 2,213,640 - IAI47_10440 0.81 -1.0 2,213,640 - IAI47_10440 0.81 +0.0 2,213,640 - IAI47_10440 0.81 -1.6 2,213,640 - IAI47_10440 0.81 +0.8 2,213,712 + +2.7 2,213,713 - -2.5 2,213,796 + -1.1 2,213,796 + -1.7 2,213,796 + +1.3 2,213,806 + +0.4 2,213,815 + -0.1 2,213,815 + +1.3 2,213,815 + -0.7 2,213,815 + -0.0 2,213,815 + +0.9 2,213,815 + +0.5 2,213,815 + +0.2 2,213,815 + +0.0 2,213,815 + -0.5 2,214,965 + +0.5 2,214,995 + +0.9 2,214,995 + +0.6 2,214,995 + +0.6 2,214,995 + -0.3 2,214,995 + -1.1 2,214,995 + -1.7 2,214,995 + -1.5 2,214,995 + +0.1 2,214,995 + -0.1 2,214,995 + -1.6
Or see this region's nucleotide sequence