Experiment: Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04610 and IAI47_04615 are separated by 324 nucleotides IAI47_04615 and IAI47_04620 are separated by 144 nucleotides IAI47_04620 and IAI47_04625 are separated by 328 nucleotides
IAI47_04610: IAI47_04610 - serine protein kinase RIO, at 971,881 to 972,735
_04610
IAI47_04615: IAI47_04615 - cold shock domain-containing protein, at 973,060 to 973,548
_04615
IAI47_04620: IAI47_04620 - YmjA family protein, at 973,693 to 973,938
_04620
IAI47_04625: IAI47_04625 - ribokinase, at 974,267 to 975,229
_04625
Position (kb) 973
974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 972.743 kb on + strand at 972.744 kb on - strand at 972.744 kb on - strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.745 kb on + strand at 972.746 kb on - strand at 972.746 kb on - strand at 972.746 kb on - strand at 972.746 kb on - strand at 972.746 kb on - strand at 972.750 kb on + strand at 972.750 kb on + strand at 972.750 kb on + strand at 972.750 kb on + strand at 972.750 kb on + strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.751 kb on - strand at 972.790 kb on + strand at 972.791 kb on - strand at 972.834 kb on + strand at 972.834 kb on + strand at 972.834 kb on + strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.835 kb on - strand at 972.840 kb on + strand at 972.841 kb on - strand at 972.936 kb on - strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.976 kb on + strand at 972.977 kb on - strand at 972.977 kb on - strand at 972.994 kb on + strand at 973.061 kb on + strand at 973.062 kb on - strand at 973.074 kb on + strand at 973.074 kb on + strand at 973.083 kb on + strand at 973.209 kb on + strand, within IAI47_04615 at 973.210 kb on - strand, within IAI47_04615 at 973.249 kb on - strand, within IAI47_04615 at 973.292 kb on + strand, within IAI47_04615 at 973.292 kb on + strand, within IAI47_04615 at 973.293 kb on - strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.370 kb on + strand, within IAI47_04615 at 973.371 kb on - strand, within IAI47_04615 at 973.371 kb on - strand, within IAI47_04615 at 973.378 kb on + strand, within IAI47_04615 at 973.378 kb on + strand, within IAI47_04615 at 973.378 kb on + strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.452 kb on + strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.509 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.565 kb on + strand at 973.565 kb on + strand at 973.566 kb on - strand at 973.566 kb on - strand at 973.591 kb on + strand at 973.591 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.660 kb on + strand at 973.661 kb on - strand at 973.687 kb on + strand at 973.688 kb on - strand at 973.688 kb on - strand at 973.688 kb on - strand at 973.694 kb on + strand at 973.694 kb on + strand at 973.695 kb on - strand at 973.695 kb on - strand at 973.729 kb on - strand, within IAI47_04620 at 973.737 kb on + strand, within IAI47_04620 at 973.737 kb on + strand, within IAI47_04620 at 973.737 kb on + strand, within IAI47_04620 at 973.737 kb on + strand, within IAI47_04620 at 973.737 kb on + strand, within IAI47_04620 at 973.737 kb on + strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.770 kb on + strand, within IAI47_04620 at 973.835 kb on + strand, within IAI47_04620 at 973.835 kb on + strand, within IAI47_04620 at 973.835 kb on + strand, within IAI47_04620 at 973.835 kb on + strand, within IAI47_04620 at 973.836 kb on - strand, within IAI47_04620 at 973.851 kb on + strand, within IAI47_04620 at 973.852 kb on - strand, within IAI47_04620 at 973.876 kb on - strand, within IAI47_04620 at 973.892 kb on + strand, within IAI47_04620 at 973.892 kb on + strand, within IAI47_04620 at 973.892 kb on + strand, within IAI47_04620 at 973.893 kb on - strand, within IAI47_04620 at 973.893 kb on - strand, within IAI47_04620 at 973.893 kb on - strand, within IAI47_04620 at 973.893 kb on - strand, within IAI47_04620 at 973.910 kb on + strand, within IAI47_04620 at 973.910 kb on + strand, within IAI47_04620 at 973.911 kb on - strand, within IAI47_04620 at 973.911 kb on - strand, within IAI47_04620 at 973.911 kb on - strand, within IAI47_04620 at 973.911 kb on - strand, within IAI47_04620 at 973.913 kb on + strand, within IAI47_04620 at 973.914 kb on - strand at 973.914 kb on - strand at 973.932 kb on + strand at 973.938 kb on + strand at 973.938 kb on + strand at 973.938 kb on + strand at 973.938 kb on + strand at 973.939 kb on - strand at 973.939 kb on - strand at 973.939 kb on - strand at 973.962 kb on - strand at 973.962 kb on - strand at 973.962 kb on - strand at 974.007 kb on + strand at 974.007 kb on + strand at 974.007 kb on + strand at 974.008 kb on - strand at 974.078 kb on - strand at 974.078 kb on - strand at 974.078 kb on - strand at 974.079 kb on + strand at 974.079 kb on + strand at 974.080 kb on - strand at 974.108 kb on + strand at 974.277 kb on - strand at 974.277 kb on - strand at 974.277 kb on - strand at 974.296 kb on + strand at 974.299 kb on + strand at 974.299 kb on + strand at 974.300 kb on - strand at 974.300 kb on - strand at 974.300 kb on - strand at 974.300 kb on - strand at 974.340 kb on + strand at 974.341 kb on - strand at 974.515 kb on + strand, within IAI47_04625 at 974.515 kb on + strand, within IAI47_04625 at 974.516 kb on - strand, within IAI47_04625 at 974.516 kb on - strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.537 kb on - strand, within IAI47_04625 at 974.537 kb on - strand, within IAI47_04625 at 974.569 kb on + strand, within IAI47_04625 at 974.569 kb on + strand, within IAI47_04625 at 974.590 kb on + strand, within IAI47_04625 at 974.591 kb on - strand, within IAI47_04625 at 974.600 kb on + strand, within IAI47_04625 at 974.601 kb on - strand, within IAI47_04625 at 974.601 kb on - strand, within IAI47_04625 at 974.601 kb on - strand, within IAI47_04625 at 974.635 kb on + strand, within IAI47_04625 at 974.636 kb on - strand, within IAI47_04625 at 974.636 kb on - strand, within IAI47_04625 at 974.643 kb on - strand, within IAI47_04625 at 974.650 kb on + strand, within IAI47_04625 at 974.651 kb on - strand, within IAI47_04625 at 974.675 kb on - strand, within IAI47_04625 at 974.770 kb on + strand, within IAI47_04625 at 974.770 kb on + strand, within IAI47_04625 at 974.771 kb on - strand, within IAI47_04625 at 974.813 kb on + strand, within IAI47_04625 at 974.813 kb on + strand, within IAI47_04625 at 974.814 kb on - strand, within IAI47_04625 at 974.814 kb on - strand, within IAI47_04625 at 974.842 kb on + strand, within IAI47_04625 at 974.842 kb on + strand, within IAI47_04625 at 974.843 kb on - strand, within IAI47_04625 at 974.881 kb on + strand, within IAI47_04625 at 974.881 kb on + strand, within IAI47_04625 at 974.882 kb on - strand, within IAI47_04625 at 974.882 kb on - strand, within IAI47_04625 at 974.908 kb on + strand, within IAI47_04625 at 974.909 kb on - strand, within IAI47_04625 at 974.934 kb on + strand, within IAI47_04625 at 974.934 kb on + strand, within IAI47_04625 at 974.934 kb on + strand, within IAI47_04625 at 974.935 kb on - strand, within IAI47_04625 at 974.935 kb on - strand, within IAI47_04625 at 974.935 kb on - strand, within IAI47_04625
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 972,743 + +1.7 972,744 - -0.6 972,744 - -0.7 972,745 + -0.4 972,745 + +0.8 972,745 + +0.8 972,745 + -0.2 972,745 + +0.6 972,745 + +0.8 972,746 - -0.7 972,746 - -1.2 972,746 - +0.6 972,746 - -0.4 972,746 - +1.4 972,750 + +1.6 972,750 + +1.9 972,750 + +0.4 972,750 + -0.1 972,750 + -1.3 972,751 - +0.2 972,751 - -1.2 972,751 - +0.2 972,751 - -1.2 972,751 - -0.6 972,751 - -0.9 972,751 - +1.2 972,751 - -0.4 972,751 - -0.4 972,751 - +0.1 972,790 + +0.8 972,791 - +0.4 972,834 + -0.5 972,834 + +0.0 972,834 + -1.6 972,835 - -1.8 972,835 - +0.0 972,835 - -0.4 972,835 - -1.1 972,835 - +2.1 972,835 - -0.4 972,840 + -0.7 972,841 - +0.4 972,936 - +0.2 972,976 + -2.2 972,976 + +1.5 972,976 + -0.0 972,976 + -1.1 972,976 + -1.5 972,976 + -0.3 972,976 + +1.3 972,976 + -0.1 972,977 - -0.8 972,977 - +0.8 972,994 + +1.2 973,061 + +0.4 973,062 - +0.5 973,074 + -1.3 973,074 + -0.0 973,083 + -0.2 973,209 + IAI47_04615 0.30 +0.2 973,210 - IAI47_04615 0.31 -0.6 973,249 - IAI47_04615 0.39 +1.6 973,292 + IAI47_04615 0.47 +0.2 973,292 + IAI47_04615 0.47 +0.0 973,293 - IAI47_04615 0.48 +0.8 973,334 + IAI47_04615 0.56 +1.7 973,334 + IAI47_04615 0.56 +0.2 973,334 + IAI47_04615 0.56 +3.1 973,334 + IAI47_04615 0.56 +3.4 973,334 + IAI47_04615 0.56 -0.6 973,334 + IAI47_04615 0.56 +0.1 973,335 - IAI47_04615 0.56 -0.2 973,335 - IAI47_04615 0.56 +0.7 973,335 - IAI47_04615 0.56 +2.3 973,335 - IAI47_04615 0.56 +1.0 973,335 - IAI47_04615 0.56 +0.2 973,335 - IAI47_04615 0.56 +0.6 973,335 - IAI47_04615 0.56 -1.2 973,340 + IAI47_04615 0.57 +0.6 973,340 + IAI47_04615 0.57 -0.6 973,340 + IAI47_04615 0.57 +1.3 973,340 + IAI47_04615 0.57 -1.5 973,341 - IAI47_04615 0.57 -0.2 973,341 - IAI47_04615 0.57 -2.4 973,341 - IAI47_04615 0.57 -0.1 973,341 - IAI47_04615 0.57 -0.1 973,341 - IAI47_04615 0.57 +0.2 973,341 - IAI47_04615 0.57 +1.2 973,341 - IAI47_04615 0.57 +1.3 973,341 - IAI47_04615 0.57 -1.0 973,341 - IAI47_04615 0.57 +0.3 973,370 + IAI47_04615 0.63 -0.5 973,371 - IAI47_04615 0.64 -0.0 973,371 - IAI47_04615 0.64 +2.4 973,378 + IAI47_04615 0.65 +0.1 973,378 + IAI47_04615 0.65 +0.3 973,378 + IAI47_04615 0.65 -0.0 973,379 - IAI47_04615 0.65 +0.8 973,379 - IAI47_04615 0.65 +0.5 973,379 - IAI47_04615 0.65 +0.6 973,379 - IAI47_04615 0.65 +1.1 973,379 - IAI47_04615 0.65 -0.0 973,379 - IAI47_04615 0.65 +0.1 973,452 + IAI47_04615 0.80 -0.7 973,453 - IAI47_04615 0.80 +0.9 973,453 - IAI47_04615 0.80 +0.9 973,453 - IAI47_04615 0.80 +0.5 973,453 - IAI47_04615 0.80 -1.4 973,453 - IAI47_04615 0.80 +0.5 973,453 - IAI47_04615 0.80 +2.2 973,509 + -1.4 973,560 + +1.9 973,560 + +0.2 973,560 + -2.1 973,560 + -0.1 973,560 + -0.6 973,560 + +0.6 973,561 - +0.9 973,561 - -0.5 973,561 - +0.5 973,561 - -1.5 973,561 - +2.2 973,565 + -0.3 973,565 + +1.2 973,566 - +1.1 973,566 - -0.5 973,591 + -0.9 973,591 + -0.2 973,614 + +1.1 973,614 + +0.4 973,614 + -1.1 973,614 + +0.2 973,614 + -1.8 973,614 + -0.9 973,614 + -0.4 973,615 - +0.3 973,615 - -0.2 973,615 - +1.6 973,615 - -0.2 973,615 - -0.6 973,615 - +0.3 973,615 - +0.6 973,615 - +0.9 973,615 - +1.2 973,616 + -0.7 973,616 + +0.9 973,616 + +1.8 973,616 + +1.8 973,616 + +0.6 973,616 + -0.0 973,616 + -2.8 973,616 + +0.2 973,616 + -1.0 973,616 + -0.9 973,616 + +0.3 973,616 + +0.3 973,616 + -1.5 973,616 + -1.4 973,617 - +0.2 973,617 - -0.2 973,617 - +0.8 973,617 - +0.4 973,617 - -0.2 973,617 - -0.1 973,617 - -1.6 973,617 - -0.1 973,617 - -0.2 973,617 - +0.2 973,617 - -1.0 973,617 - +0.1 973,617 - -0.4 973,618 + -0.3 973,618 + +1.0 973,618 + +0.6 973,618 + +0.6 973,618 + +0.6 973,618 + +1.8 973,618 + +0.5 973,618 + +0.1 973,618 + -0.8 973,618 + +0.3 973,618 + -0.8 973,619 - -2.4 973,619 - -1.6 973,619 - +0.9 973,619 - -1.3 973,619 - +1.0 973,619 - -1.8 973,619 - +0.4 973,619 - -0.0 973,619 - -1.2 973,619 - -1.9 973,660 + +2.0 973,661 - +1.2 973,687 + -0.6 973,688 - +0.5 973,688 - +0.4 973,688 - +0.6 973,694 + +1.9 973,694 + +1.5 973,695 - +0.5 973,695 - +0.2 973,729 - IAI47_04620 0.15 -0.1 973,737 + IAI47_04620 0.18 -1.8 973,737 + IAI47_04620 0.18 -0.2 973,737 + IAI47_04620 0.18 -0.4 973,737 + IAI47_04620 0.18 +0.4 973,737 + IAI47_04620 0.18 +0.8 973,737 + IAI47_04620 0.18 -0.2 973,738 - IAI47_04620 0.18 -0.8 973,738 - IAI47_04620 0.18 +1.2 973,738 - IAI47_04620 0.18 -0.8 973,738 - IAI47_04620 0.18 -2.2 973,738 - IAI47_04620 0.18 -1.2 973,738 - IAI47_04620 0.18 +2.4 973,738 - IAI47_04620 0.18 -0.4 973,738 - IAI47_04620 0.18 -3.4 973,770 + IAI47_04620 0.31 -0.1 973,835 + IAI47_04620 0.58 -0.5 973,835 + IAI47_04620 0.58 -0.4 973,835 + IAI47_04620 0.58 +0.1 973,835 + IAI47_04620 0.58 -0.9 973,836 - IAI47_04620 0.58 -0.1 973,851 + IAI47_04620 0.64 -0.7 973,852 - IAI47_04620 0.65 +0.4 973,876 - IAI47_04620 0.74 +1.1 973,892 + IAI47_04620 0.81 +3.7 973,892 + IAI47_04620 0.81 +0.9 973,892 + IAI47_04620 0.81 +1.8 973,893 - IAI47_04620 0.81 +1.6 973,893 - IAI47_04620 0.81 -1.2 973,893 - IAI47_04620 0.81 +0.8 973,893 - IAI47_04620 0.81 +1.1 973,910 + IAI47_04620 0.88 -0.4 973,910 + IAI47_04620 0.88 -0.7 973,911 - IAI47_04620 0.89 +0.1 973,911 - IAI47_04620 0.89 +0.9 973,911 - IAI47_04620 0.89 -0.9 973,911 - IAI47_04620 0.89 +2.2 973,913 + IAI47_04620 0.89 +0.5 973,914 - +1.6 973,914 - 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IAI47_04625 0.35 +1.3 974,601 - IAI47_04625 0.35 +1.2 974,601 - IAI47_04625 0.35 -1.1 974,635 + IAI47_04625 0.38 +0.5 974,636 - IAI47_04625 0.38 +0.0 974,636 - IAI47_04625 0.38 -1.4 974,643 - IAI47_04625 0.39 +0.5 974,650 + IAI47_04625 0.40 +1.8 974,651 - IAI47_04625 0.40 -0.5 974,675 - IAI47_04625 0.42 +0.6 974,770 + IAI47_04625 0.52 +0.5 974,770 + IAI47_04625 0.52 -0.5 974,771 - IAI47_04625 0.52 +1.6 974,813 + IAI47_04625 0.57 +1.4 974,813 + IAI47_04625 0.57 +0.8 974,814 - IAI47_04625 0.57 +0.2 974,814 - IAI47_04625 0.57 +0.2 974,842 + IAI47_04625 0.60 -1.3 974,842 + IAI47_04625 0.60 +1.8 974,843 - IAI47_04625 0.60 +0.4 974,881 + IAI47_04625 0.64 +0.7 974,881 + IAI47_04625 0.64 -1.1 974,882 - IAI47_04625 0.64 -0.4 974,882 - IAI47_04625 0.64 -0.2 974,908 + IAI47_04625 0.67 +1.4 974,909 - IAI47_04625 0.67 -0.6 974,934 + IAI47_04625 0.69 -0.7 974,934 + IAI47_04625 0.69 -1.0 974,934 + IAI47_04625 0.69 +0.6 974,935 - IAI47_04625 0.69 +0.4 974,935 - IAI47_04625 0.69 +1.3 974,935 - IAI47_04625 0.69 +2.5
Or see this region's nucleotide sequence