Strain Fitness in Pantoea sp. MT58 around IAI47_18355

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,905,393	+				-1.5
3,905,393	+				+1.7
3,905,393	+				+1.2
3,905,394	-				-0.2
3,905,394	-				-1.5
3,905,394	-				+0.3
3,905,394	-				-0.3
3,905,394	-				+0.3
3,905,394	-				-0.4
3,905,394	-				+0.6
3,905,394	-				-0.5
3,905,394	-				+0.6
3,905,414	+				+0.4
3,905,414	+				-1.6
3,905,414	+				+0.1
3,905,414	+				-0.6
3,905,414	+				-0.4
3,905,414	+				-1.2
3,905,414	+				+1.2
3,905,414	+				-0.2
3,905,414	+				-1.4
3,905,415	-				+0.0
3,905,415	-				-0.7
3,905,415	-				+1.0
3,905,415	-				-1.6
3,905,415	-				-1.9
3,905,415	-				+2.2
3,905,415	-				-0.7
3,905,415	-				-1.6
3,905,415	-				+2.3
3,905,415	-				-0.3
3,905,415	-				+0.8
3,905,416	+				-1.0
3,905,416	+				+1.2
3,905,416	+				+2.1
3,905,416	+				+0.8
3,905,416	+				+2.2
3,905,416	+				+1.1
3,905,417	-				-1.5
3,905,417	-				-0.3
3,905,417	-				-0.6
3,905,417	-				+0.6
3,905,417	-				-0.5
3,905,417	-				-0.5
3,905,417	-				+0.4
3,905,433	-				+1.4
3,905,451	-		IAI47_18350	0.11	+1.4
3,905,520	+		IAI47_18350	0.20	-0.4
3,905,520	+		IAI47_18350	0.20	-0.8
3,905,520	+		IAI47_18350	0.20	+0.1
3,905,521	-		IAI47_18350	0.20	+1.1
3,905,521	-		IAI47_18350	0.20	+0.0
3,905,521	-		IAI47_18350	0.20	-0.5
3,905,543	+		IAI47_18350	0.23	-0.6
3,905,543	+		IAI47_18350	0.23	+0.0
3,905,543	+		IAI47_18350	0.23	-1.2
3,905,543	+		IAI47_18350	0.23	-0.2
3,905,543	+		IAI47_18350	0.23	-1.4
3,905,544	-		IAI47_18350	0.23	+0.0
3,905,544	-		IAI47_18350	0.23	+0.1
3,905,545	+		IAI47_18350	0.23	+0.9
3,905,546	-		IAI47_18350	0.23	+0.5
3,905,546	-		IAI47_18350	0.23	+1.0
3,905,557	+		IAI47_18350	0.25	+1.4
3,905,557	+		IAI47_18350	0.25	+0.4
3,905,557	+		IAI47_18350	0.25	+0.0
3,905,558	-		IAI47_18350	0.25	-1.0
3,905,583	+		IAI47_18350	0.28	+0.4
3,905,583	+		IAI47_18350	0.28	+1.1
3,905,584	-		IAI47_18350	0.28	-0.9
3,905,614	+		IAI47_18350	0.32	-0.1
3,905,614	+		IAI47_18350	0.32	+0.1
3,905,614	+		IAI47_18350	0.32	+0.4
3,905,614	+		IAI47_18350	0.32	+0.5
3,905,614	+		IAI47_18350	0.32	-1.3
3,905,614	+		IAI47_18350	0.32	+0.6
3,905,614	+		IAI47_18350	0.32	+2.5
3,905,614	+		IAI47_18350	0.32	-0.3
3,905,614	+		IAI47_18350	0.32	-1.0
3,905,614	+		IAI47_18350	0.32	+0.8
3,905,615	-		IAI47_18350	0.32	-0.5
3,905,615	-		IAI47_18350	0.32	-0.2
3,905,615	-		IAI47_18350	0.32	-0.3
3,905,615	-		IAI47_18350	0.32	+0.9
3,905,615	-		IAI47_18350	0.32	+1.0
3,905,615	-		IAI47_18350	0.32	+2.7
3,905,615	-		IAI47_18350	0.32	+2.0
3,905,615	-		IAI47_18350	0.32	-0.0
3,905,615	-		IAI47_18350	0.32	-0.7
3,905,615	-		IAI47_18350	0.32	-0.7
3,905,615	-		IAI47_18350	0.32	-0.5
3,905,615	-		IAI47_18350	0.32	-1.8
3,905,615	-		IAI47_18350	0.32	+0.2
3,905,615	-		IAI47_18350	0.32	-1.2
3,905,615	-		IAI47_18350	0.32	+1.3
3,905,615	-		IAI47_18350	0.32	+1.8
3,905,619	+		IAI47_18350	0.32	-1.8
3,905,619	+		IAI47_18350	0.32	+0.7
3,905,620	-		IAI47_18350	0.32	-0.7
3,905,620	-		IAI47_18350	0.32	+1.4
3,905,620	-		IAI47_18350	0.32	+1.7
3,905,724	+		IAI47_18350	0.45	-2.5
3,905,724	+		IAI47_18350	0.45	+0.4
3,905,724	+		IAI47_18350	0.45	+0.0
3,905,725	-		IAI47_18350	0.45	+0.4
3,905,725	-		IAI47_18350	0.45	+3.6
3,905,738	+		IAI47_18350	0.47	+0.6
3,905,738	+		IAI47_18350	0.47	-0.8
3,905,788	+		IAI47_18350	0.53	-2.2
3,905,788	+		IAI47_18350	0.53	-0.9
3,905,789	-		IAI47_18350	0.53	+2.4
3,905,809	+		IAI47_18350	0.56	+1.0
3,905,829	-		IAI47_18350	0.58	-0.9
3,905,875	+		IAI47_18350	0.64	-1.5
3,905,875	+		IAI47_18350	0.64	+0.1
3,905,876	-		IAI47_18350	0.64	-0.8
3,905,954	+		IAI47_18350	0.74	-0.7
3,905,955	-		IAI47_18350	0.74	-2.9
3,905,955	-		IAI47_18350	0.74	+0.0
3,905,965	+		IAI47_18350	0.75	-2.0
3,905,965	+		IAI47_18350	0.75	-0.5
3,905,966	-		IAI47_18350	0.75	+0.5
3,905,973	-		IAI47_18350	0.76	+0.5
3,905,999	+		IAI47_18350	0.79	-0.9
3,906,139	-				-1.5
3,906,139	-				+0.9
3,906,147	+				-0.1
3,906,147	+				+1.0
3,906,147	+				-1.8
3,906,168	+				+0.2
3,906,168	+				+0.5
3,906,168	+				-0.3
3,906,169	-				+0.2
3,906,169	-				+0.4
3,906,199	-				+1.6
3,906,206	+				+1.2
3,906,227	+				-2.8
3,906,249	+				+2.4
3,906,249	+				-1.2
3,906,249	+				-0.7
3,906,250	-				+0.5
3,906,250	-				+0.7
3,906,250	-				+1.4
3,906,251	+				-1.9
3,906,251	+				+1.6
3,906,251	+				-1.4
3,906,261	+				+0.4
3,906,261	+				-1.1
3,906,262	-				+0.2
3,906,262	-				+0.6
3,906,262	-				+1.2
3,906,262	-				-1.7
3,906,324	+				-0.2
3,906,324	+				-0.2
3,906,324	+				-0.2
3,906,324	+				+0.9
3,906,324	+				+1.8
3,906,324	+				+0.3
3,906,325	-				-0.1
3,906,325	-				-0.5
3,906,325	-				-1.6
3,906,325	-				+0.3
3,906,372	+				-1.0
3,906,372	+				-0.7
3,906,373	-				-0.5
3,906,373	-				-1.0
3,906,373	-				+0.3
3,906,391	-				-0.5
3,906,401	-				-1.4
3,906,413	-				+1.6
3,906,413	-				+1.3
3,906,413	-				+0.6
3,906,471	+		IAI47_18355	0.13	+1.0
3,906,472	-		IAI47_18355	0.13	-0.5
3,906,503	-		IAI47_18355	0.18	-0.8
3,906,541	+		IAI47_18355	0.24	-0.0
3,906,541	+		IAI47_18355	0.24	-0.6
3,906,541	+		IAI47_18355	0.24	-1.6
3,906,541	+		IAI47_18355	0.24	+0.6
3,906,541	+		IAI47_18355	0.24	-1.5
3,906,542	-		IAI47_18355	0.25	+0.0
3,906,542	-		IAI47_18355	0.25	-0.6
3,906,542	-		IAI47_18355	0.25	-0.3
3,906,618	+		IAI47_18355	0.37	+0.2
3,906,618	+		IAI47_18355	0.37	+0.2
3,906,619	-		IAI47_18355	0.37	+0.6
3,906,622	+		IAI47_18355	0.37	+0.8
3,906,623	-		IAI47_18355	0.38	+0.8
3,906,623	-		IAI47_18355	0.38	-0.3
3,906,623	-		IAI47_18355	0.38	+0.4
3,906,632	-		IAI47_18355	0.39	-1.0
3,906,695	+		IAI47_18355	0.49	+0.6
3,906,695	+		IAI47_18355	0.49	+2.0
3,906,696	-		IAI47_18355	0.49	+0.8
3,906,696	-		IAI47_18355	0.49	+3.3
3,906,696	-		IAI47_18355	0.49	+0.2
3,906,696	-		IAI47_18355	0.49	+1.0
3,906,771	+		IAI47_18355	0.61	-1.6
3,906,771	+		IAI47_18355	0.61	-0.2
3,906,771	+		IAI47_18355	0.61	+2.3
3,906,771	+		IAI47_18355	0.61	+0.4
3,906,771	+		IAI47_18355	0.61	+0.6
3,906,771	+		IAI47_18355	0.61	-0.9
3,906,771	+		IAI47_18355	0.61	-0.7
3,906,771	+		IAI47_18355	0.61	+0.5
3,906,771	+		IAI47_18355	0.61	+0.0
3,906,772	-		IAI47_18355	0.61	-0.3
3,906,772	-		IAI47_18355	0.61	-0.3
3,906,772	-		IAI47_18355	0.61	+0.4
3,906,772	-		IAI47_18355	0.61	-0.2
3,906,772	-		IAI47_18355	0.61	-0.0
3,906,772	-		IAI47_18355	0.61	+0.5
3,906,772	-		IAI47_18355	0.61	+0.1
3,906,773	-		IAI47_18355	0.62	+0.6
3,906,877	+		IAI47_18355	0.78	+0.6
3,906,877	+		IAI47_18355	0.78	+0.6
3,906,877	+		IAI47_18355	0.78	-0.9
3,906,877	+		IAI47_18355	0.78	-1.1
3,906,878	-		IAI47_18355	0.78	-1.6
3,906,878	-		IAI47_18355	0.78	+1.1
3,906,880	+		IAI47_18355	0.79	-0.9
3,906,880	+		IAI47_18355	0.79	+0.5
3,906,935	+		IAI47_18355	0.88	+2.3
3,907,001	+				-0.5
3,907,001	+				-2.6
3,907,001	+				-0.3
3,907,012	+				+1.7
3,907,012	+				-1.0
3,907,012	+				+0.1
3,907,012	+				+1.4
3,907,012	+				-1.9
3,907,012	+				-0.2
3,907,012	+				+0.5
3,907,013	-				+1.3
3,907,013	-				+1.0
3,907,013	-				-2.1
3,907,013	-				-1.5
3,907,013	-				+0.0
3,907,013	-				-0.1
3,907,027	-				+0.7
3,907,157	+				+0.6
3,907,157	+				+0.0
3,907,157	+				-2.2
3,907,158	-				+0.7
3,907,185	+				-2.0
3,907,185	+				+1.3
3,907,186	-				-1.1
3,907,186	-				+4.0
3,907,186	-				+1.8
3,907,186	-				-0.5
3,907,186	-				-0.2
3,907,195	+				-1.5
3,907,195	+				-0.1
3,907,195	+				+0.6
3,907,195	+				+1.0
3,907,195	+				+0.2
3,907,195	+				-0.3
3,907,196	-				-0.8
3,907,196	-				+0.0
3,907,196	-				-0.6
3,907,196	-				+0.4
3,907,196	-				-1.2
3,907,228	+		IAI47_18360	0.11	+0.2
3,907,228	+		IAI47_18360	0.11	-0.5
3,907,228	+		IAI47_18360	0.11	-0.7
3,907,229	-		IAI47_18360	0.11	-2.0
3,907,229	-		IAI47_18360	0.11	+0.8
3,907,229	-		IAI47_18360	0.11	+0.3
3,907,229	-		IAI47_18360	0.11	-0.5
3,907,229	-		IAI47_18360	0.11	-0.5
3,907,229	-		IAI47_18360	0.11	+2.7
3,907,257	+		IAI47_18360	0.13	-0.7
3,907,258	-		IAI47_18360	0.13	-0.5
3,907,258	-		IAI47_18360	0.13	-1.9
3,907,306	+		IAI47_18360	0.15	+1.2
3,907,307	-		IAI47_18360	0.15	+0.3
3,907,307	-		IAI47_18360	0.15	-1.3
3,907,307	-		IAI47_18360	0.15	-0.6
3,907,307	-		IAI47_18360	0.15	+1.8
3,907,307	-		IAI47_18360	0.15	-0.6
3,907,379	+		IAI47_18360	0.19	-2.1
3,907,393	+		IAI47_18360	0.20	-0.7
3,907,394	-		IAI47_18360	0.20	-0.8
3,907,427	+		IAI47_18360	0.22	+0.4
3,907,427	+		IAI47_18360	0.22	+0.7
3,907,427	+		IAI47_18360	0.22	-0.2
3,907,428	-		IAI47_18360	0.22	+0.2
3,907,436	+		IAI47_18360	0.22	-0.5
3,907,436	+		IAI47_18360	0.22	+2.1
3,907,436	+		IAI47_18360	0.22	+0.0
3,907,436	+		IAI47_18360	0.22	+2.8
3,907,436	+		IAI47_18360	0.22	-0.7
3,907,436	+		IAI47_18360	0.22	-1.2
3,907,437	-		IAI47_18360	0.23	-0.3
3,907,437	-		IAI47_18360	0.23	-1.3
3,907,483	-		IAI47_18360	0.25	-1.2
3,907,483	-		IAI47_18360	0.25	-0.2
3,907,483	-		IAI47_18360	0.25	+1.2
3,907,517	-		IAI47_18360	0.27	+0.8
3,907,517	-		IAI47_18360	0.27	-1.9
3,907,526	-		IAI47_18360	0.27	+1.3
3,907,526	-		IAI47_18360	0.27	-1.5
3,907,526	-		IAI47_18360	0.27	+0.2
3,907,528	+		IAI47_18360	0.27	-0.3
3,907,528	+		IAI47_18360	0.27	+0.4
3,907,528	+		IAI47_18360	0.27	+0.2
3,907,529	-		IAI47_18360	0.28	-0.6
3,907,529	-		IAI47_18360	0.28	+0.0
3,907,553	-		IAI47_18360	0.29	-0.5
3,907,553	-		IAI47_18360	0.29	-0.6
3,907,553	-		IAI47_18360	0.29	-1.5
3,907,554	+		IAI47_18360	0.29	+0.9
3,907,554	+		IAI47_18360	0.29	-1.5
3,907,554	+		IAI47_18360	0.29	+0.9
3,907,554	+		IAI47_18360	0.29	+0.3
3,907,554	+		IAI47_18360	0.29	-2.1
3,907,554	+		IAI47_18360	0.29	+1.4
3,907,555	-		IAI47_18360	0.29	-0.9
3,907,555	-		IAI47_18360	0.29	+4.4
3,907,555	-		IAI47_18360	0.29	-0.8
3,907,555	-		IAI47_18360	0.29	+0.7
3,907,555	-		IAI47_18360	0.29	+1.1
3,907,555	-		IAI47_18360	0.29	-0.4
3,907,555	-		IAI47_18360	0.29	+3.6
3,907,555	-		IAI47_18360	0.29	+1.4
3,907,555	-		IAI47_18360	0.29	+0.3
3,907,584	+		IAI47_18360	0.31	-0.4
3,907,584	+		IAI47_18360	0.31	-0.2
3,907,584	+		IAI47_18360	0.31	-0.5
3,907,584	+		IAI47_18360	0.31	+1.4
3,907,585	-		IAI47_18360	0.31	+1.5
3,907,585	-		IAI47_18360	0.31	-0.3
3,907,585	-		IAI47_18360	0.31	+0.6
3,907,585	-		IAI47_18360	0.31	-0.2
3,907,585	-		IAI47_18360	0.31	+0.5
3,907,585	-		IAI47_18360	0.31	-0.9
3,907,585	-		IAI47_18360	0.31	+0.5
3,907,588	+		IAI47_18360	0.31	-0.9
3,907,588	+		IAI47_18360	0.31	+0.0
3,907,589	-		IAI47_18360	0.31	+0.9
3,907,626	+		IAI47_18360	0.33	-1.2
3,907,627	-		IAI47_18360	0.33	+0.0
3,907,634	-		IAI47_18360	0.33	-0.5
3,907,651	+		IAI47_18360	0.34	+0.9
3,907,651	+		IAI47_18360	0.34	-1.5
3,907,651	+		IAI47_18360	0.34	+0.5
3,907,652	-		IAI47_18360	0.34	+1.7
3,907,652	-		IAI47_18360	0.34	-2.2
3,907,652	-		IAI47_18360	0.34	+0.0
3,907,652	-		IAI47_18360	0.34	-0.5
3,907,652	-		IAI47_18360	0.34	+0.4
3,907,692	+		IAI47_18360	0.36	+0.7
3,907,693	-		IAI47_18360	0.37	+0.2
3,907,693	-		IAI47_18360	0.37	-0.3
3,907,807	+		IAI47_18360	0.43	-0.9
3,907,807	+		IAI47_18360	0.43	+0.7
3,907,807	+		IAI47_18360	0.43	+0.6
3,907,808	-		IAI47_18360	0.43	+1.9
3,907,808	-		IAI47_18360	0.43	-2.2
3,907,808	-		IAI47_18360	0.43	+0.2
3,907,808	-		IAI47_18360	0.43	-2.7
3,907,808	-		IAI47_18360	0.43	-0.7
3,907,836	+		IAI47_18360	0.44	-1.5
3,907,837	-		IAI47_18360	0.44	+1.1
3,907,837	-		IAI47_18360	0.44	-1.9
3,907,893	+		IAI47_18360	0.47	+1.2
3,907,893	+		IAI47_18360	0.47	+0.2
3,907,894	-		IAI47_18360	0.47	-0.6
3,907,896	+		IAI47_18360	0.48	-0.5
3,907,896	+		IAI47_18360	0.48	-0.6
3,907,896	+		IAI47_18360	0.48	-1.8
3,907,896	+		IAI47_18360	0.48	+0.3
3,907,896	+		IAI47_18360	0.48	-1.0
3,907,897	-		IAI47_18360	0.48	-0.2
3,907,906	+		IAI47_18360	0.48	+0.3
3,907,907	-		IAI47_18360	0.48	+0.8
3,907,907	-		IAI47_18360	0.48	+0.7
3,907,907	-		IAI47_18360	0.48	+0.2
3,907,909	+		IAI47_18360	0.48	+0.5
3,907,910	-		IAI47_18360	0.48	+0.3
3,907,918	+		IAI47_18360	0.49	-0.1
3,907,957	+		IAI47_18360	0.51	+0.4
3,907,958	-		IAI47_18360	0.51	+1.2
3,907,958	-		IAI47_18360	0.51	-0.2