Strain Fitness in Pantoea sp. MT58 around IAI47_17575

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,726,398	+		IAI47_17570	0.58	+1.0
3,726,398	+		IAI47_17570	0.58	-1.7
3,726,398	+		IAI47_17570	0.58	-0.3
3,726,457	+		IAI47_17570	0.63	+0.4
3,726,457	+		IAI47_17570	0.63	+0.1
3,726,457	+		IAI47_17570	0.63	-0.5
3,726,458	-		IAI47_17570	0.63	+1.0
3,726,467	+		IAI47_17570	0.64	-0.5
3,726,489	-		IAI47_17570	0.66	+0.0
3,726,602	+		IAI47_17570	0.76	+0.2
3,726,602	+		IAI47_17570	0.76	-3.1
3,726,602	+		IAI47_17570	0.76	+1.3
3,726,603	-		IAI47_17570	0.76	+1.4
3,726,603	-		IAI47_17570	0.76	+0.2
3,726,603	-		IAI47_17570	0.76	+1.8
3,726,603	-		IAI47_17570	0.76	-1.0
3,726,603	-		IAI47_17570	0.76	-0.7
3,726,603	-		IAI47_17570	0.76	+0.6
3,726,612	+		IAI47_17570	0.77	+1.3
3,726,612	+		IAI47_17570	0.77	-2.2
3,726,612	+		IAI47_17570	0.77	+0.5
3,726,613	-		IAI47_17570	0.77	-0.2
3,726,616	+		IAI47_17570	0.77	+0.5
3,726,616	+		IAI47_17570	0.77	+0.2
3,726,617	-		IAI47_17570	0.77	-0.9
3,726,617	-		IAI47_17570	0.77	+1.0
3,726,617	-		IAI47_17570	0.77	-1.3
3,726,617	-		IAI47_17570	0.77	+0.1
3,726,617	-		IAI47_17570	0.77	-0.4
3,726,617	-		IAI47_17570	0.77	-0.4
3,726,617	-		IAI47_17570	0.77	+0.0
3,726,653	+		IAI47_17570	0.80	+0.4
3,726,654	-		IAI47_17570	0.80	-1.0
3,726,668	+		IAI47_17570	0.82	-0.1
3,726,668	+		IAI47_17570	0.82	+0.3
3,726,668	+		IAI47_17570	0.82	+1.8
3,726,668	+		IAI47_17570	0.82	-0.9
3,726,668	+		IAI47_17570	0.82	-0.9
3,726,668	+		IAI47_17570	0.82	-0.6
3,726,669	-		IAI47_17570	0.82	-2.8
3,726,669	-		IAI47_17570	0.82	+0.1
3,726,669	-		IAI47_17570	0.82	+0.0
3,726,669	-		IAI47_17570	0.82	-2.0
3,726,669	-		IAI47_17570	0.82	-2.1
3,726,669	-		IAI47_17570	0.82	+0.3
3,726,669	-		IAI47_17570	0.82	-0.7
3,726,669	-		IAI47_17570	0.82	+0.3
3,726,669	-		IAI47_17570	0.82	-0.4
3,726,669	-		IAI47_17570	0.82	+0.8
3,726,680	+		IAI47_17570	0.83	-0.9
3,726,681	-		IAI47_17570	0.83	+0.5
3,726,681	-		IAI47_17570	0.83	-0.9
3,726,681	-		IAI47_17570	0.83	-0.7
3,726,716	-		IAI47_17570	0.86	-0.6
3,726,721	+		IAI47_17570	0.86	-0.9
3,726,721	+		IAI47_17570	0.86	+0.0
3,726,721	+		IAI47_17570	0.86	-2.8
3,726,722	-		IAI47_17570	0.86	+0.7
3,726,722	-		IAI47_17570	0.86	-0.2
3,726,722	-		IAI47_17570	0.86	+0.0
3,726,722	-		IAI47_17570	0.86	-1.2
3,726,722	-				+0.6
3,726,724	+		IAI47_17570	0.86	+0.1
3,726,724	+		IAI47_17570	0.86	+0.6
3,726,724	+		IAI47_17570	0.86	+0.2
3,726,725	-		IAI47_17570	0.87	-1.3
3,726,725	-		IAI47_17570	0.87	+0.8
3,726,725	-		IAI47_17570	0.87	-0.0
3,726,820	-				+1.2
3,726,826	+				-0.0
3,726,935	+				-0.5
3,726,935	+				-0.8
3,726,936	-				-0.9
3,726,944	+				-0.0
3,726,945	-				-1.0
3,726,945	-				+1.4
3,726,954	+				-2.9
3,726,954	+				-0.8
3,726,954	+				-2.5
3,726,973	+				-0.3
3,726,973	+				-1.5
3,726,974	-				+0.1
3,726,984	+				-0.3
3,726,985	-				+1.2
3,726,985	-				+2.3
3,726,996	+				-1.1
3,726,997	-				+0.5
3,726,997	-				+0.9
3,726,999	+				+0.9
3,727,000	-				+3.5
3,727,000	-				-0.6
3,727,000	-				-0.6
3,727,000	-				-1.2
3,727,082	+				-0.7
3,727,082	+				-0.2
3,727,082	+				+0.8
3,727,082	+				+0.0
3,727,082	+				+0.3
3,727,083	-				-1.4
3,727,090	+				+1.8
3,727,090	+				+0.3
3,727,090	+				-1.6
3,727,090	+				-1.3
3,727,090	+				-0.2
3,727,090	+				-1.1
3,727,090	+				-1.0
3,727,090	+				+0.0
3,727,090	+				+0.5
3,727,090	+				+1.1
3,727,090	+				-0.7
3,727,090	+				-1.7
3,727,090	+				+2.3
3,727,091	-				-0.5
3,727,091	-				+0.7
3,727,091	-				-1.7
3,727,091	-				+0.1
3,727,091	-				+1.3
3,727,091	-				+1.3
3,727,091	-				+0.7
3,727,091	-				+2.1
3,727,091	-				+0.2
3,727,092	+				+1.6
3,727,092	+				-0.8
3,727,092	+				-0.5
3,727,092	+				-0.8
3,727,092	+				-0.2
3,727,092	+				+0.5
3,727,092	+				-0.0
3,727,093	-				-0.4
3,727,093	-				+1.2
3,727,093	-				-1.5
3,727,107	-				+0.2
3,727,107	-				-0.3
3,727,107	-				-1.9
3,727,107	-				+2.7
3,727,213	+				-0.7
3,727,213	+				+1.8
3,727,269	+				+0.7
3,727,269	+				+0.5
3,727,269	+				-0.8
3,727,269	+				+0.5
3,727,269	+				-0.2
3,727,269	+				-0.9
3,727,269	+				+0.1
3,727,269	+				+0.2
3,727,269	+				+0.3
3,727,269	+				+2.0
3,727,269	+				+0.7
3,727,269	+				-0.1
3,727,269	+				-1.5
3,727,269	+				+1.0
3,727,269	+				+0.1
3,727,269	+				+0.4
3,727,269	+				-1.4
3,727,270	-				-0.0
3,727,270	-				-1.3
3,727,270	-				+1.6
3,727,270	-				-1.7
3,727,270	-				+0.5
3,727,299	-				+0.0
3,727,333	+				-0.3
3,727,341	+				-0.1
3,727,432	+				-2.8
3,727,433	-				+0.5
3,727,519	+		IAI47_17575	0.14	+0.7
3,727,519	+		IAI47_17575	0.14	+0.9
3,727,520	-		IAI47_17575	0.14	-1.2
3,727,520	-		IAI47_17575	0.14	-1.1
3,727,523	-		IAI47_17575	0.15	-1.1
3,727,523	-		IAI47_17575	0.15	-0.1
3,727,523	-		IAI47_17575	0.15	-1.0
3,727,523	-		IAI47_17575	0.15	+0.5
3,727,525	+		IAI47_17575	0.15	+0.2
3,727,525	+		IAI47_17575	0.15	-2.3
3,727,525	+		IAI47_17575	0.15	-0.9
3,727,525	+		IAI47_17575	0.15	-2.1
3,727,525	+		IAI47_17575	0.15	+0.2
3,727,525	+		IAI47_17575	0.15	+0.9
3,727,525	+		IAI47_17575	0.15	+1.0
3,727,525	+		IAI47_17575	0.15	-1.5
3,727,526	-		IAI47_17575	0.15	+0.3
3,727,526	-		IAI47_17575	0.15	+0.7
3,727,526	-		IAI47_17575	0.15	+0.6
3,727,526	-		IAI47_17575	0.15	-1.4
3,727,529	+		IAI47_17575	0.15	-1.1
3,727,530	-		IAI47_17575	0.15	+0.5
3,727,565	-		IAI47_17575	0.18	-1.5
3,727,606	+		IAI47_17575	0.21	+0.8
3,727,606	+		IAI47_17575	0.21	+0.6
3,727,606	+		IAI47_17575	0.21	-1.3
3,727,606	+		IAI47_17575	0.21	+0.5
3,727,606	+		IAI47_17575	0.21	-0.2
3,727,606	+		IAI47_17575	0.21	-0.1
3,727,606	+		IAI47_17575	0.21	-1.5
3,727,606	+		IAI47_17575	0.21	+1.2
3,727,606	+		IAI47_17575	0.21	+0.7
3,727,606	+		IAI47_17575	0.21	+0.6
3,727,607	-		IAI47_17575	0.21	-2.0
3,727,607	-		IAI47_17575	0.21	-0.0
3,727,607	-		IAI47_17575	0.21	+0.2
3,727,607	-		IAI47_17575	0.21	+1.8
3,727,607	-		IAI47_17575	0.21	-0.2
3,727,607	-		IAI47_17575	0.21	+0.1
3,727,615	+		IAI47_17575	0.22	-0.5
3,727,615	+		IAI47_17575	0.22	+0.1
3,727,615	+		IAI47_17575	0.22	+0.6
3,727,615	+		IAI47_17575	0.22	+1.2
3,727,615	+		IAI47_17575	0.22	+2.8
3,727,615	+		IAI47_17575	0.22	-1.2
3,727,615	+		IAI47_17575	0.22	-1.2
3,727,616	-		IAI47_17575	0.22	-0.6
3,727,616	-		IAI47_17575	0.22	+0.2
3,727,616	-		IAI47_17575	0.22	-0.3
3,727,679	+		IAI47_17575	0.27	+1.2
3,727,679	+		IAI47_17575	0.27	-0.2
3,727,680	-		IAI47_17575	0.27	+0.1
3,727,680	-		IAI47_17575	0.27	+1.2
3,727,706	+		IAI47_17575	0.29	-1.4
3,727,706	+		IAI47_17575	0.29	+0.2
3,727,706	+		IAI47_17575	0.29	+0.7
3,727,707	-		IAI47_17575	0.29	+0.6
3,727,720	+		IAI47_17575	0.30	-1.3
3,727,720	+		IAI47_17575	0.30	-0.5
3,727,720	+		IAI47_17575	0.30	-0.3
3,727,721	-		IAI47_17575	0.31	-0.6
3,727,721	-		IAI47_17575	0.31	-0.2
3,727,721	-		IAI47_17575	0.31	-1.8
3,727,721	-		IAI47_17575	0.31	+0.4
3,727,721	-		IAI47_17575	0.31	-1.1
3,727,721	-		IAI47_17575	0.31	-1.3
3,727,721	-		IAI47_17575	0.31	-0.1
3,727,721	-		IAI47_17575	0.31	-0.5
3,727,721	-		IAI47_17575	0.31	+0.5
3,727,748	-		IAI47_17575	0.33	-1.6
3,727,765	+		IAI47_17575	0.34	-1.6
3,727,765	+		IAI47_17575	0.34	-0.3
3,727,837	+		IAI47_17575	0.40	+1.6
3,727,837	+		IAI47_17575	0.40	+0.3
3,727,837	+		IAI47_17575	0.40	-1.6
3,727,837	+		IAI47_17575	0.40	-1.5
3,727,837	+		IAI47_17575	0.40	-0.7
3,727,837	+		IAI47_17575	0.40	-1.8
3,727,837	+		IAI47_17575	0.40	+0.6
3,727,838	-		IAI47_17575	0.40	-0.9
3,727,880	+		IAI47_17575	0.43	+0.8
3,727,881	-		IAI47_17575	0.43	+0.1
3,727,881	-		IAI47_17575	0.43	-0.0
3,727,936	+		IAI47_17575	0.48	+0.3
3,727,937	-		IAI47_17575	0.48	-2.4
3,727,945	+		IAI47_17575	0.48	+1.2
3,727,946	-		IAI47_17575	0.49	-0.8
3,727,946	-		IAI47_17575	0.49	+2.8
3,727,964	+		IAI47_17575	0.50	+0.4
3,728,001	+		IAI47_17575	0.53	-0.2
3,728,001	+		IAI47_17575	0.53	-0.2
3,728,001	+		IAI47_17575	0.53	-1.8
3,728,002	-		IAI47_17575	0.53	+2.0
3,728,002	-		IAI47_17575	0.53	+2.1
3,728,037	+		IAI47_17575	0.56	+0.7
3,728,037	+		IAI47_17575	0.56	-0.8
3,728,038	-		IAI47_17575	0.56	+0.3
3,728,038	-		IAI47_17575	0.56	-0.2
3,728,038	-		IAI47_17575	0.56	+0.9
3,728,038	-		IAI47_17575	0.56	-0.2
3,728,058	+		IAI47_17575	0.58	+1.5
3,728,058	+		IAI47_17575	0.58	-0.9
3,728,058	+		IAI47_17575	0.58	+0.2
3,728,059	-		IAI47_17575	0.58	+0.8
3,728,082	+		IAI47_17575	0.59	-1.6
3,728,082	+		IAI47_17575	0.59	-0.2
3,728,082	+		IAI47_17575	0.59	+1.0
3,728,082	+		IAI47_17575	0.59	+1.7
3,728,082	+		IAI47_17575	0.59	+1.2
3,728,083	-		IAI47_17575	0.60	-0.7
3,728,083	-		IAI47_17575	0.60	+0.3
3,728,083	-		IAI47_17575	0.60	-0.7
3,728,083	-		IAI47_17575	0.60	+0.8
3,728,083	-		IAI47_17575	0.60	-1.0
3,728,083	-		IAI47_17575	0.60	-1.5
3,728,149	+		IAI47_17575	0.65	+0.4
3,728,149	+		IAI47_17575	0.65	-1.8
3,728,149	+		IAI47_17575	0.65	+2.0
3,728,150	-		IAI47_17575	0.65	+1.0
3,728,236	+		IAI47_17575	0.72	+1.6
3,728,236	+		IAI47_17575	0.72	-1.1
3,728,236	+		IAI47_17575	0.72	+2.3
3,728,237	-		IAI47_17575	0.72	+1.2
3,728,237	-		IAI47_17575	0.72	+1.7
3,728,237	-		IAI47_17575	0.72	-0.2
3,728,237	-		IAI47_17575	0.72	-0.7
3,728,263	+		IAI47_17575	0.74	+1.4
3,728,272	+		IAI47_17575	0.75	+0.2
3,728,273	-		IAI47_17575	0.75	+0.6
3,728,273	-		IAI47_17575	0.75	+0.8
3,728,273	-		IAI47_17575	0.75	+2.1
3,728,279	+		IAI47_17575	0.75	+0.6
3,728,279	+		IAI47_17575	0.75	-0.6
3,728,279	+		IAI47_17575	0.75	-1.2
3,728,279	+		IAI47_17575	0.75	-0.3
3,728,279	+		IAI47_17575	0.75	-0.5
3,728,280	-		IAI47_17575	0.75	-1.9
3,728,280	-		IAI47_17575	0.75	-1.8
3,728,284	+		IAI47_17575	0.76	+0.7
3,728,284	+		IAI47_17575	0.76	+0.4
3,728,284	+		IAI47_17575	0.76	-1.7
3,728,284	+		IAI47_17575	0.76	+0.2
3,728,284	+		IAI47_17575	0.76	+0.1
3,728,284	+		IAI47_17575	0.76	+0.9
3,728,285	-		IAI47_17575	0.76	+0.1
3,728,285	-		IAI47_17575	0.76	-0.5
3,728,285	-		IAI47_17575	0.76	-1.1
3,728,285	-		IAI47_17575	0.76	+0.4
3,728,285	-		IAI47_17575	0.76	-0.2
3,728,285	-		IAI47_17575	0.76	+1.1
3,728,285	-		IAI47_17575	0.76	-0.7
3,728,285	-		IAI47_17575	0.76	-0.9
3,728,294	+		IAI47_17575	0.76	-0.1
3,728,294	+		IAI47_17575	0.76	+1.6
3,728,295	-		IAI47_17575	0.77	-1.2
3,728,295	-		IAI47_17575	0.77	-0.6
3,728,355	+		IAI47_17575	0.81	-0.1
3,728,355	+		IAI47_17575	0.81	-1.3
3,728,356	-		IAI47_17575	0.81	+2.7
3,728,356	-		IAI47_17575	0.81	+0.8
3,728,457	+		IAI47_17575	0.90	+0.4
3,728,457	+		IAI47_17575	0.90	+0.5
3,728,457	+		IAI47_17575	0.90	+0.6
3,728,457	+		IAI47_17575	0.90	+0.9
3,728,457	+		IAI47_17575	0.90	-0.4
3,728,457	+		IAI47_17575	0.90	+1.8
3,728,458	-		IAI47_17575	0.90	+2.2
3,728,458	-		IAI47_17575	0.90	+1.9
3,728,458	-		IAI47_17575	0.90	-1.7
3,728,458	-		IAI47_17575	0.90	+2.1
3,728,458	-		IAI47_17575	0.90	+0.9
3,728,458	-		IAI47_17575	0.90	+0.1
3,728,578	+				-1.6
3,728,578	+				+0.4
3,728,578	+				-1.4
3,728,579	-				+1.5
3,728,579	-				+1.8
3,728,579	-				+0.7
3,728,579	-				-2.4
3,728,593	-				-1.2
3,728,634	+				-1.5
3,728,634	+				+1.3
3,728,635	-				-0.8
3,728,642	+				+0.5
3,728,642	+				-0.2
3,728,642	+				-0.8
3,728,642	+				-0.2
3,728,663	+				+0.2
3,728,710	+				+2.6
3,728,711	-				-0.5
3,728,711	-				-0.2
3,728,720	+				-1.0
3,728,720	+				+0.1
3,728,730	+				+0.6
3,728,730	+				-2.5
3,728,730	+				+0.9
3,728,731	-				-2.0
3,728,731	-				-1.4
3,728,766	+				+1.2
3,728,770	-				+0.0
3,728,784	-				-1.5
3,728,787	+				+0.2
3,728,799	+				+0.9
3,728,800	-				-1.7
3,728,846	-				+0.2
3,728,848	+				-1.7
3,728,848	+				+1.5
3,728,849	-				+1.0
3,728,849	-				-2.9
3,728,852	+				-1.7
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3,728,853	-				-0.1
3,728,853	-				-1.7
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3,728,855	-				-1.3
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3,728,904	+				-1.5
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3,728,940	+				+0.3
3,728,948	+				-0.8
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3,728,949	-				-3.1
3,728,958	+				-0.7
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3,729,003	-		IAI47_17580	0.11	-2.2
3,729,004	+		IAI47_17580	0.11	-1.0
3,729,005	-		IAI47_17580	0.12	-1.4
3,729,005	-		IAI47_17580	0.12	-1.4
3,729,006	+		IAI47_17580	0.12	-3.0
3,729,013	+		IAI47_17580	0.13	-2.0
3,729,013	+		IAI47_17580	0.13	-2.1
3,729,013	+		IAI47_17580	0.13	-0.2
3,729,014	-		IAI47_17580	0.13	-3.5
3,729,014	-		IAI47_17580	0.13	-1.5
3,729,018	+		IAI47_17580	0.13	-1.6
3,729,019	-		IAI47_17580	0.14	-0.9
3,729,027	+		IAI47_17580	0.15	-2.4
3,729,027	+		IAI47_17580	0.15	-2.3
3,729,027	+		IAI47_17580	0.15	-2.9
3,729,027	+		IAI47_17580	0.15	-1.0
3,729,028	-		IAI47_17580	0.15	-1.8
3,729,040	-		IAI47_17580	0.17	-2.3
3,729,045	+		IAI47_17580	0.18	-1.9
3,729,046	-		IAI47_17580	0.18	-1.3
3,729,046	-		IAI47_17580	0.18	-3.9
3,729,046	-		IAI47_17580	0.18	-2.2
3,729,064	+		IAI47_17580	0.20	-0.2
3,729,064	+		IAI47_17580	0.20	-1.3
3,729,065	-		IAI47_17580	0.21	-0.5
3,729,065	-		IAI47_17580	0.21	-3.8
3,729,067	-		IAI47_17580	0.21	-1.3
3,729,107	+		IAI47_17580	0.27	-3.0
3,729,107	+		IAI47_17580	0.27	-3.0
3,729,107	+		IAI47_17580	0.27	-1.0
3,729,107	+		IAI47_17580	0.27	-1.9
3,729,111	+		IAI47_17580	0.28	-2.9
3,729,111	+		IAI47_17580	0.28	-1.0
3,729,111	+		IAI47_17580	0.28	-3.6
3,729,111	+		IAI47_17580	0.28	-2.9
3,729,114	+		IAI47_17580	0.28	-3.4
3,729,165	-		IAI47_17580	0.36	-0.1
3,729,223	+		IAI47_17580	0.45	-2.7
3,729,224	-		IAI47_17580	0.45	-1.1
3,729,224	-		IAI47_17580	0.45	-1.5
3,729,224	-		IAI47_17580	0.45	-1.3
3,729,224	-		IAI47_17580	0.45	-1.9
3,729,233	+		IAI47_17580	0.46	-1.7
3,729,233	+		IAI47_17580	0.46	-0.9
3,729,261	-		IAI47_17580	0.50	-0.7
3,729,261	-		IAI47_17580	0.50	+0.5
3,729,275	+		IAI47_17580	0.52	-3.5
3,729,306	-		IAI47_17580	0.57	-3.0
3,729,306	-		IAI47_17580	0.57	-1.3
3,729,366	-		IAI47_17580	0.66	-1.2
3,729,390	+		IAI47_17580	0.70	-2.5
3,729,390	+		IAI47_17580	0.70	-0.7
3,729,390	+		IAI47_17580	0.70	-2.7
3,729,391	-		IAI47_17580	0.70	-1.5
3,729,391	-		IAI47_17580	0.70	-2.8
3,729,391	-		IAI47_17580	0.70	-3.5
3,729,391	-		IAI47_17580	0.70	-1.1
3,729,420	+		IAI47_17580	0.74	-0.1
3,729,421	-		IAI47_17580	0.75	-2.3
3,729,425	-		IAI47_17580	0.75	-2.7
3,729,450	+		IAI47_17580	0.79	-2.1
3,729,451	-		IAI47_17580	0.79	-1.8
3,729,498	+		IAI47_17580	0.86	-1.3
3,729,498	+		IAI47_17580	0.86	+1.0
3,729,498	+		IAI47_17580	0.86	-1.2
3,729,498	+		IAI47_17580	0.86	-2.4
3,729,498	+		IAI47_17580	0.86	-1.9
3,729,499	-		IAI47_17580	0.86	-2.2
3,729,533	+				-3.0
3,729,534	-				+0.1
3,729,534	-				-1.9
3,729,534	-				-0.2
3,729,576	+				-0.4
3,729,576	+				+0.1
3,729,577	-				-0.1
3,729,577	-				-1.3