Strain Fitness in Pantoea sp. MT58 around IAI47_17535

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,717,070	-		IAI47_17530	0.36	+3.6
3,717,212	+		IAI47_17530	0.47	-0.5
3,717,212	+		IAI47_17530	0.47	+1.1
3,717,212	+		IAI47_17530	0.47	-0.1
3,717,213	-		IAI47_17530	0.47	+0.8
3,717,213	-		IAI47_17530	0.47	-0.0
3,717,213	-		IAI47_17530	0.47	+0.3
3,717,213	-		IAI47_17530	0.47	-1.0
3,717,213	-		IAI47_17530	0.47	-0.7
3,717,213	-		IAI47_17530	0.47	+1.4
3,717,213	-		IAI47_17530	0.47	+0.0
3,717,240	+		IAI47_17530	0.49	-0.5
3,717,240	+		IAI47_17530	0.49	-1.2
3,717,240	+		IAI47_17530	0.49	-0.1
3,717,240	+		IAI47_17530	0.49	-0.9
3,717,241	-		IAI47_17530	0.49	+0.4
3,717,241	-		IAI47_17530	0.49	+1.2
3,717,288	+		IAI47_17530	0.53	-0.5
3,717,297	+		IAI47_17530	0.54	+0.4
3,717,297	+		IAI47_17530	0.54	+1.0
3,717,298	-		IAI47_17530	0.54	-1.7
3,717,298	-		IAI47_17530	0.54	-0.0
3,717,298	-		IAI47_17530	0.54	+0.4
3,717,320	+		IAI47_17530	0.55	-0.2
3,717,320	+		IAI47_17530	0.55	+1.2
3,717,320	+		IAI47_17530	0.55	+1.3
3,717,321	-		IAI47_17530	0.55	-0.3
3,717,321	-		IAI47_17530	0.55	+1.6
3,717,381	+		IAI47_17530	0.60	+1.4
3,717,381	+		IAI47_17530	0.60	-0.5
3,717,382	-		IAI47_17530	0.60	-1.5
3,717,414	+		IAI47_17530	0.62	-0.7
3,717,414	+		IAI47_17530	0.62	+0.3
3,717,472	-		IAI47_17530	0.67	-0.6
3,717,472	-		IAI47_17530	0.67	-2.4
3,717,514	-		IAI47_17530	0.70	+0.5
3,717,616	-		IAI47_17530	0.77	-0.6
3,717,621	+		IAI47_17530	0.78	-2.1
3,717,621	+		IAI47_17530	0.78	-1.9
3,717,622	-		IAI47_17530	0.78	+0.5
3,717,622	-		IAI47_17530	0.78	-1.3
3,717,622	-		IAI47_17530	0.78	+1.0
3,717,622	-		IAI47_17530	0.78	+0.0
3,717,641	+				+0.9
3,717,642	-		IAI47_17530	0.79	+1.2
3,717,695	+		IAI47_17530	0.83	+0.2
3,717,695	+		IAI47_17530	0.83	+0.6
3,717,786	-				+3.2
3,717,805	-				+0.1
3,717,805	-				+0.7
3,717,805	-				+0.1
3,717,991	+				+0.1
3,717,991	+				+0.4
3,717,992	-				+0.0
3,718,011	-				-1.8
3,718,020	+				+0.4
3,718,051	+				-0.3
3,718,052	-				-0.8
3,718,093	+				-1.6
3,718,093	+				+0.6
3,718,094	-				-1.3
3,718,237	+		IAI47_17535	0.27	-1.4
3,718,238	-		IAI47_17535	0.27	-0.5
3,718,238	-		IAI47_17535	0.27	+0.3
3,718,238	-		IAI47_17535	0.27	-0.7
3,718,340	+		IAI47_17535	0.39	+0.4
3,718,340	+		IAI47_17535	0.39	+1.3
3,718,340	+		IAI47_17535	0.39	-0.4
3,718,340	+		IAI47_17535	0.39	+0.2
3,718,341	-		IAI47_17535	0.39	-1.2
3,718,341	-		IAI47_17535	0.39	-0.8
3,718,341	-		IAI47_17535	0.39	+0.0
3,718,391	-		IAI47_17535	0.46	-0.3
3,718,434	+		IAI47_17535	0.51	+2.0
3,718,434	+		IAI47_17535	0.51	-1.3
3,718,434	+		IAI47_17535	0.51	+0.1
3,718,435	-		IAI47_17535	0.51	-0.7
3,718,435	-		IAI47_17535	0.51	+0.2
3,718,435	-		IAI47_17535	0.51	-0.3
3,718,435	-		IAI47_17535	0.51	+0.9
3,718,435	-		IAI47_17535	0.51	+2.2
3,718,435	-		IAI47_17535	0.51	-1.0
3,718,483	+		IAI47_17535	0.57	+0.8
3,718,483	+		IAI47_17535	0.57	+0.2
3,718,483	+		IAI47_17535	0.57	-0.1
3,718,483	+		IAI47_17535	0.57	+1.2
3,718,483	+		IAI47_17535	0.57	+1.7
3,718,484	-		IAI47_17535	0.57	+0.1
3,718,484	-		IAI47_17535	0.57	-0.2
3,718,583	-		IAI47_17535	0.69	+0.2
3,718,583	-		IAI47_17535	0.69	+1.8
3,718,604	+		IAI47_17535	0.72	-0.5
3,718,604	+		IAI47_17535	0.72	+0.1
3,718,605	-		IAI47_17535	0.72	-0.5
3,718,605	-		IAI47_17535	0.72	+0.8
3,718,605	-		IAI47_17535	0.72	+2.0
3,718,641	+		IAI47_17535	0.76	-0.9
3,718,641	+		IAI47_17535	0.76	-2.0
3,718,641	+		IAI47_17535	0.76	+1.5
3,718,642	-		IAI47_17535	0.76	+3.5
3,718,642	-		IAI47_17535	0.76	-1.0
3,718,642	-		IAI47_17535	0.76	+0.8
3,718,649	-		IAI47_17535	0.77	-0.3
3,718,649	-		IAI47_17535	0.77	+0.9
3,718,649	-		IAI47_17535	0.77	+1.1
3,718,678	-		IAI47_17535	0.81	+0.3
3,718,741	+		IAI47_17535	0.88	+1.4
3,718,741	+		IAI47_17535	0.88	+1.3
3,718,742	-		IAI47_17535	0.89	-0.0
3,718,742	-		IAI47_17535	0.89	-1.1
3,718,790	+				+1.0
3,718,791	-				+1.5
3,718,791	-				-0.5
3,718,838	+				+0.2
3,718,868	+				+0.4
3,718,868	+				+2.5
3,718,868	+				-0.2
3,718,868	+				+1.5
3,718,868	+				+1.0
3,718,869	-				+1.0
3,718,879	+				+0.6
3,718,887	+				-1.5
3,718,887	+				-0.1
3,718,887	+				-1.4
3,718,920	-				-1.3
3,718,928	+		IAI47_17540	0.11	+1.0
3,718,929	-		IAI47_17540	0.11	+1.2
3,718,950	+		IAI47_17540	0.13	+2.1
3,718,950	+		IAI47_17540	0.13	-0.8
3,718,950	+		IAI47_17540	0.13	-1.0
3,718,950	+		IAI47_17540	0.13	+0.6
3,718,950	+		IAI47_17540	0.13	-1.4
3,718,951	-		IAI47_17540	0.13	-1.4
3,718,951	-		IAI47_17540	0.13	+0.0
3,718,951	-		IAI47_17540	0.13	-0.3
3,718,951	-		IAI47_17540	0.13	-0.7
3,718,951	-		IAI47_17540	0.13	-2.7
3,718,951	-		IAI47_17540	0.13	+0.2
3,718,951	-		IAI47_17540	0.13	-2.4
3,718,951	-		IAI47_17540	0.13	-2.0
3,718,952	+		IAI47_17540	0.14	-0.5
3,718,952	+		IAI47_17540	0.14	-0.8
3,718,952	+		IAI47_17540	0.14	+0.1
3,718,952	+		IAI47_17540	0.14	-0.9
3,718,952	+		IAI47_17540	0.14	-2.4
3,718,952	+		IAI47_17540	0.14	+0.5
3,718,952	+		IAI47_17540	0.14	-2.1
3,718,952	+		IAI47_17540	0.14	-0.6
3,718,952	+		IAI47_17540	0.14	+0.6
3,718,952	+		IAI47_17540	0.14	+0.9
3,718,952	+		IAI47_17540	0.14	-0.3
3,718,953	-		IAI47_17540	0.14	+1.2
3,718,953	-		IAI47_17540	0.14	+1.4
3,718,953	-		IAI47_17540	0.14	+1.3
3,718,953	-		IAI47_17540	0.14	+0.6
3,718,953	-		IAI47_17540	0.14	+0.2
3,718,953	-		IAI47_17540	0.14	+0.8
3,718,953	-		IAI47_17540	0.14	-0.0
3,718,956	+		IAI47_17540	0.14	+0.3
3,718,956	+		IAI47_17540	0.14	-0.7
3,718,956	+		IAI47_17540	0.14	+0.5
3,718,956	+		IAI47_17540	0.14	-1.1
3,718,956	+		IAI47_17540	0.14	-0.2
3,718,956	+		IAI47_17540	0.14	+0.2
3,718,956	+		IAI47_17540	0.14	-2.1
3,718,956	+		IAI47_17540	0.14	+0.0
3,718,956	+		IAI47_17540	0.14	-0.5
3,718,957	-		IAI47_17540	0.14	+0.4
3,718,957	-		IAI47_17540	0.14	-0.8
3,718,957	-		IAI47_17540	0.14	-0.4
3,718,957	-		IAI47_17540	0.14	+0.2
3,718,957	-		IAI47_17540	0.14	-0.3
3,718,957	-		IAI47_17540	0.14	+0.1
3,718,957	-		IAI47_17540	0.14	+0.4
3,718,957	-		IAI47_17540	0.14	-2.5
3,718,957	-		IAI47_17540	0.14	+1.5
3,718,957	-		IAI47_17540	0.14	-2.2
3,718,957	-		IAI47_17540	0.14	-0.2
3,718,957	-		IAI47_17540	0.14	+0.7
3,718,957	-		IAI47_17540	0.14	+2.8
3,718,957	-		IAI47_17540	0.14	+0.4
3,718,957	-		IAI47_17540	0.14	+1.0
3,718,957	-		IAI47_17540	0.14	-0.7
3,718,957	-		IAI47_17540	0.14	-0.3
3,718,957	-		IAI47_17540	0.14	+2.0
3,718,957	-		IAI47_17540	0.14	-0.3
3,718,957	-		IAI47_17540	0.14	+1.1
3,719,009	+		IAI47_17540	0.20	+0.8
3,719,009	+		IAI47_17540	0.20	+0.6
3,719,009	+		IAI47_17540	0.20	-1.6
3,719,009	+		IAI47_17540	0.20	-2.5
3,719,009	+		IAI47_17540	0.20	-0.5
3,719,009	+		IAI47_17540	0.20	-0.5
3,719,009	+		IAI47_17540	0.20	+0.8
3,719,009	+		IAI47_17540	0.20	+1.4
3,719,009	+		IAI47_17540	0.20	+0.0
3,719,009	+		IAI47_17540	0.20	-1.5
3,719,009	+		IAI47_17540	0.20	-1.8
3,719,010	-		IAI47_17540	0.20	+2.5
3,719,010	-		IAI47_17540	0.20	-1.0
3,719,010	-		IAI47_17540	0.20	+0.6
3,719,010	-		IAI47_17540	0.20	+0.8
3,719,010	-		IAI47_17540	0.20	-0.6
3,719,091	+		IAI47_17540	0.29	-1.7
3,719,091	+		IAI47_17540	0.29	+0.7
3,719,091	+		IAI47_17540	0.29	+0.9
3,719,091	+		IAI47_17540	0.29	-0.3
3,719,091	+		IAI47_17540	0.29	-1.8
3,719,091	+		IAI47_17540	0.29	+0.8
3,719,092	-		IAI47_17540	0.30	+0.1
3,719,092	-		IAI47_17540	0.30	-0.3
3,719,094	+		IAI47_17540	0.30	+1.1
3,719,094	+		IAI47_17540	0.30	-0.5
3,719,094	+		IAI47_17540	0.30	+1.2
3,719,094	+		IAI47_17540	0.30	-1.3
3,719,094	+				-0.6
3,719,095	-		IAI47_17540	0.30	+2.3
3,719,095	-		IAI47_17540	0.30	-0.1
3,719,095	-		IAI47_17540	0.30	+1.0
3,719,095	-		IAI47_17540	0.30	-0.3
3,719,095	-		IAI47_17540	0.30	-0.1
3,719,095	-		IAI47_17540	0.30	-0.1
3,719,160	+		IAI47_17540	0.37	+0.8
3,719,160	+		IAI47_17540	0.37	-0.3
3,719,160	+		IAI47_17540	0.37	+0.3
3,719,160	+		IAI47_17540	0.37	+0.9
3,719,160	+		IAI47_17540	0.37	+0.5
3,719,160	+		IAI47_17540	0.37	+1.0
3,719,160	+		IAI47_17540	0.37	+0.2
3,719,178	+		IAI47_17540	0.39	-1.3
3,719,178	+		IAI47_17540	0.39	-0.4
3,719,179	-		IAI47_17540	0.40	+0.4
3,719,179	-		IAI47_17540	0.40	-1.2
3,719,179	-		IAI47_17540	0.40	+0.3
3,719,179	-		IAI47_17540	0.40	+1.3
3,719,207	+		IAI47_17540	0.43	+0.5
3,719,207	+		IAI47_17540	0.43	-0.2
3,719,207	+		IAI47_17540	0.43	-1.2
3,719,207	+		IAI47_17540	0.43	+1.1
3,719,208	-		IAI47_17540	0.43	+0.3
3,719,208	-		IAI47_17540	0.43	-0.5
3,719,208	-		IAI47_17540	0.43	+0.7
3,719,296	+		IAI47_17540	0.53	-2.0
3,719,299	+		IAI47_17540	0.53	-0.5
3,719,299	+		IAI47_17540	0.53	-0.3
3,719,299	+		IAI47_17540	0.53	-0.3
3,719,299	+		IAI47_17540	0.53	-0.1
3,719,299	+		IAI47_17540	0.53	-1.4
3,719,300	-		IAI47_17540	0.53	+0.1
3,719,300	-		IAI47_17540	0.53	+1.6
3,719,300	-		IAI47_17540	0.53	+0.2
3,719,330	+		IAI47_17540	0.57	-1.3
3,719,330	+		IAI47_17540	0.57	-0.2
3,719,331	-		IAI47_17540	0.57	-0.1
3,719,331	-		IAI47_17540	0.57	-1.2
3,719,375	+		IAI47_17540	0.62	-1.5
3,719,375	+		IAI47_17540	0.62	-0.9
3,719,375	+		IAI47_17540	0.62	-0.0
3,719,376	-		IAI47_17540	0.62	-0.7
3,719,376	-		IAI47_17540	0.62	+0.2
3,719,376	-		IAI47_17540	0.62	+1.9
3,719,376	-		IAI47_17540	0.62	-0.6
3,719,376	-		IAI47_17540	0.62	+0.2
3,719,376	-		IAI47_17540	0.62	-0.3
3,719,376	-		IAI47_17540	0.62	-0.2
3,719,376	-		IAI47_17540	0.62	-0.5
3,719,376	-		IAI47_17540	0.62	+1.2
3,719,401	+		IAI47_17540	0.65	-0.1
3,719,401	+		IAI47_17540	0.65	+1.5
3,719,401	+		IAI47_17540	0.65	+0.8
3,719,402	-		IAI47_17540	0.65	-1.0
3,719,402	-		IAI47_17540	0.65	+0.1
3,719,415	+		IAI47_17540	0.67	+0.7
3,719,432	+		IAI47_17540	0.68	+0.4
3,719,433	-		IAI47_17540	0.69	-0.3
3,719,478	+		IAI47_17540	0.74	+0.4
3,719,478	+		IAI47_17540	0.74	-0.6
3,719,479	-		IAI47_17540	0.74	-0.1
3,719,480	+		IAI47_17540	0.74	-2.0
3,719,480	+		IAI47_17540	0.74	+0.6
3,719,480	+		IAI47_17540	0.74	+0.5
3,719,480	+		IAI47_17540	0.74	+0.1
3,719,480	+		IAI47_17540	0.74	+1.0
3,719,480	+		IAI47_17540	0.74	+0.7
3,719,480	+		IAI47_17540	0.74	+1.0
3,719,480	+		IAI47_17540	0.74	-0.3
3,719,481	-		IAI47_17540	0.74	+0.1
3,719,481	-		IAI47_17540	0.74	+0.4
3,719,481	-		IAI47_17540	0.74	-1.4
3,719,481	-		IAI47_17540	0.74	-0.3
3,719,481	-		IAI47_17540	0.74	+0.8
3,719,481	-		IAI47_17540	0.74	+0.4
3,719,481	-		IAI47_17540	0.74	+1.0
3,719,481	-		IAI47_17540	0.74	+2.4
3,719,502	+		IAI47_17540	0.77	+1.0
3,719,549	+		IAI47_17540	0.82	-0.2
3,719,549	+		IAI47_17540	0.82	-2.0
3,719,549	+		IAI47_17540	0.82	-1.4
3,719,549	+		IAI47_17540	0.82	+0.2
3,719,549	+		IAI47_17540	0.82	-0.1
3,719,549	+		IAI47_17540	0.82	-0.2
3,719,549	+		IAI47_17540	0.82	+1.0
3,719,549	+		IAI47_17540	0.82	+2.9
3,719,550	-		IAI47_17540	0.82	+0.8
3,719,550	-		IAI47_17540	0.82	+3.3
3,719,550	-		IAI47_17540	0.82	+1.2
3,719,550	-		IAI47_17540	0.82	+1.9
3,719,550	-		IAI47_17540	0.82	+1.3
3,719,550	-		IAI47_17540	0.82	+0.8
3,719,550	-		IAI47_17540	0.82	-0.8
3,719,550	-		IAI47_17540	0.82	-1.3
3,719,550	-		IAI47_17540	0.82	-0.1
3,719,550	-		IAI47_17540	0.82	+3.3
3,719,550	-		IAI47_17540	0.82	-2.1
3,719,550	-		IAI47_17540	0.82	+0.4
3,719,565	+		IAI47_17540	0.84	-0.6
3,719,566	-		IAI47_17540	0.84	-0.7
3,719,569	+		IAI47_17540	0.84	-0.2
3,719,569	+		IAI47_17540	0.84	-0.5
3,719,648	+				+0.9
3,719,648	+				-0.8
3,719,648	+				-2.2
3,719,648	+				+0.3
3,719,648	+				+0.3
3,719,648	+				-1.3
3,719,649	-				-1.0
3,719,649	-				-1.1
3,719,649	-				-3.0
3,719,672	+				+3.0
3,719,672	+				+2.3
3,719,672	+				-0.3
3,719,672	+				-1.1
3,719,672	+				+1.8
3,719,672	+				+0.1
3,719,673	-				-0.1
3,719,673	-				-0.1
3,719,673	-				-0.6
3,719,695	+				-1.9
3,719,706	+				+0.7
3,719,706	+				-1.2
3,719,706	+				+2.1
3,719,707	-				-0.4
3,719,712	+				-1.6
3,719,765	+				+0.3
3,719,765	+				-2.3
3,719,766	-				+1.5
3,719,766	-				+0.3
3,719,786	+				-1.0
3,719,795	+				-1.2
3,719,795	+				+0.6
3,719,795	+				-1.2
3,719,795	+				+0.7
3,719,795	+				+1.7
3,719,796	-				+0.3
3,719,796	-				-0.2
3,719,802	+				+3.1
3,719,802	+				+1.2