Strain Fitness in Pantoea sp. MT58 around IAI47_17480

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,705,264	+				+0.4
3,705,264	+				+0.1
3,705,264	+				+0.3
3,705,265	-				+0.9
3,705,265	-				-1.5
3,705,265	-				-0.9
3,705,314	-				+1.6
3,705,462	+				+1.5
3,705,473	+				+0.5
3,705,474	-				+1.7
3,705,474	-				-1.5
3,705,510	+				-0.8
3,705,511	-				-1.3
3,705,518	+				-0.2
3,705,518	+				-1.2
3,705,617	+				+0.9
3,705,618	-				-2.4
3,705,635	+				-0.2
3,705,675	+				-1.4
3,705,684	+				+0.2
3,705,692	+				-0.2
3,705,692	+				+0.9
3,705,748	-				+3.0
3,705,807	+				+0.8
3,705,889	+				+0.3
3,705,932	+				-0.6
3,705,933	-				-1.2
3,706,014	+				+1.1
3,706,014	+				+0.5
3,706,018	+				-1.7
3,706,018	+				-0.1
3,706,018	+				-0.8
3,706,019	-				+1.6
3,706,045	+				+2.0
3,706,045	+				-0.1
3,706,048	+				+1.2
3,706,048	+				-1.0
3,706,048	+				-1.6
3,706,048	+				-0.0
3,706,048	+				-0.8
3,706,048	+				+2.0
3,706,048	+				+0.7
3,706,048	+				-0.0
3,706,048	+				+0.9
3,706,048	+				+0.5
3,706,048	+				+0.7
3,706,048	+				+1.3
3,706,048	+				-2.5
3,706,049	-				-1.1
3,706,049	-				+1.1
3,706,049	-				-1.1
3,706,049	-				+0.1
3,706,049	-				+1.0
3,706,049	-				-0.7
3,706,049	-				-1.3
3,706,049	-				+0.7
3,706,050	+				-1.3
3,706,050	+				-0.5
3,706,050	+				-0.1
3,706,050	+				-1.7
3,706,050	+				+1.7
3,706,050	+				+0.2
3,706,050	+				+0.2
3,706,050	+				-0.7
3,706,050	+				+0.9
3,706,050	+				+0.8
3,706,050	+				+0.9
3,706,051	-				-0.4
3,706,051	-				+1.0
3,706,051	-				+0.6
3,706,051	-				-1.3
3,706,051	-				+1.5
3,706,051	-				+0.2
3,706,051	-				+0.8
3,706,051	-				+1.3
3,706,051	-				+0.4
3,706,051	-				-0.7
3,706,051	-				+0.1
3,706,051	-				-2.3
3,706,100	+				-1.2
3,706,135	+				-0.2
3,706,152	-				+1.6
3,706,170	-				-0.7
3,706,182	+				-2.3
3,706,183	-				-0.1
3,706,201	+				+0.5
3,706,201	+				-1.0
3,706,201	+				-1.2
3,706,202	-				-0.9
3,706,209	-				+0.1
3,706,214	+				+0.8
3,706,214	+				-1.0
3,706,214	+				+1.0
3,706,214	+				-0.5
3,706,215	-				-0.2
3,706,215	-				+0.7
3,706,215	-				-1.0
3,706,215	-				-0.2
3,706,217	-				+1.4
3,706,227	+				+0.7
3,706,247	+				+1.5
3,706,247	+				-1.1
3,706,248	-				-0.5
3,706,248	-				-1.0
3,706,248	-				-0.7
3,706,248	-				-0.2
3,706,249	+				+0.5
3,706,249	+				-0.4
3,706,249	+				-1.7
3,706,250	-				+0.5
3,706,250	-				-1.9
3,706,349	-				-0.9
3,706,440	+		IAI47_17480	0.16	+0.4
3,706,441	-		IAI47_17480	0.16	-2.0
3,706,441	-		IAI47_17480	0.16	+0.7
3,706,498	+		IAI47_17480	0.21	+3.2
3,706,498	+		IAI47_17480	0.21	-0.6
3,706,498	+		IAI47_17480	0.21	+0.4
3,706,499	-		IAI47_17480	0.21	-0.6
3,706,638	+		IAI47_17480	0.33	+0.3
3,706,638	+		IAI47_17480	0.33	-0.5
3,706,678	+		IAI47_17480	0.36	-1.4
3,706,678	+		IAI47_17480	0.36	+0.1
3,706,678	+		IAI47_17480	0.36	+0.7
3,706,678	+		IAI47_17480	0.36	+0.3
3,706,679	-		IAI47_17480	0.36	-0.1
3,706,764	+		IAI47_17480	0.43	-0.6
3,706,790	+		IAI47_17480	0.46	+1.1
3,706,791	-		IAI47_17480	0.46	-2.3
3,706,791	-		IAI47_17480	0.46	-2.6
3,706,791	-		IAI47_17480	0.46	-0.5
3,706,794	+		IAI47_17480	0.46	+1.1
3,706,794	+		IAI47_17480	0.46	+2.3
3,706,795	-		IAI47_17480	0.46	+0.2
3,706,795	-		IAI47_17480	0.46	+0.4
3,706,825	+		IAI47_17480	0.49	+1.0
3,706,825	+		IAI47_17480	0.49	-2.0
3,706,825	+		IAI47_17480	0.49	-0.2
3,706,826	-		IAI47_17480	0.49	-1.6
3,706,878	+		IAI47_17480	0.53	+0.3
3,706,878	+		IAI47_17480	0.53	+0.1
3,706,878	+		IAI47_17480	0.53	-0.3
3,706,879	-		IAI47_17480	0.53	+0.4
3,706,879	-		IAI47_17480	0.53	-0.5
3,706,879	-		IAI47_17480	0.53	-0.4
3,706,896	-		IAI47_17480	0.55	-0.7
3,706,896	-		IAI47_17480	0.55	+0.7
3,706,896	-		IAI47_17480	0.55	-1.4
3,706,919	+		IAI47_17480	0.57	-1.0
3,706,920	-		IAI47_17480	0.57	+0.0
3,706,920	-		IAI47_17480	0.57	+0.5
3,706,997	-		IAI47_17480	0.63	-1.8
3,706,997	-		IAI47_17480	0.63	-0.0
3,706,997	-		IAI47_17480	0.63	+0.7
3,707,002	+		IAI47_17480	0.64	+0.3
3,707,002	+		IAI47_17480	0.64	-1.6
3,707,002	+		IAI47_17480	0.64	-2.1
3,707,002	+		IAI47_17480	0.64	+0.6
3,707,002	+		IAI47_17480	0.64	-0.7
3,707,002	+		IAI47_17480	0.64	+0.1
3,707,002	+		IAI47_17480	0.64	-0.1
3,707,002	+		IAI47_17480	0.64	+0.2
3,707,003	-		IAI47_17480	0.64	-1.2
3,707,003	-		IAI47_17480	0.64	-1.3
3,707,003	-		IAI47_17480	0.64	+0.0
3,707,003	-		IAI47_17480	0.64	+3.0
3,707,003	-		IAI47_17480	0.64	-0.3
3,707,003	-		IAI47_17480	0.64	-0.1
3,707,003	-		IAI47_17480	0.64	+0.9
3,707,003	-		IAI47_17480	0.64	+2.0
3,707,003	-		IAI47_17480	0.64	+1.0
3,707,015	+		IAI47_17480	0.65	-1.8
3,707,037	+		IAI47_17480	0.67	-0.8
3,707,037	+		IAI47_17480	0.67	+0.3
3,707,037	+		IAI47_17480	0.67	-0.8
3,707,037	+		IAI47_17480	0.67	-0.1
3,707,037	+		IAI47_17480	0.67	-0.7
3,707,038	-		IAI47_17480	0.67	+1.2
3,707,038	-		IAI47_17480	0.67	-0.8
3,707,038	-		IAI47_17480	0.67	+2.8
3,707,038	-		IAI47_17480	0.67	-0.7
3,707,038	-		IAI47_17480	0.67	-0.0
3,707,070	-		IAI47_17480	0.69	-0.2
3,707,091	+		IAI47_17480	0.71	+2.0
3,707,091	+		IAI47_17480	0.71	+0.7
3,707,091	+		IAI47_17480	0.71	-1.9
3,707,091	+		IAI47_17480	0.71	-0.7
3,707,091	+		IAI47_17480	0.71	+2.0
3,707,091	+		IAI47_17480	0.71	+0.2
3,707,091	+		IAI47_17480	0.71	+4.6
3,707,091	+		IAI47_17480	0.71	-0.2
3,707,092	-		IAI47_17480	0.71	+1.8
3,707,092	-		IAI47_17480	0.71	-1.7
3,707,092	-		IAI47_17480	0.71	+0.7
3,707,100	+		IAI47_17480	0.72	+0.3
3,707,100	+		IAI47_17480	0.72	-0.0
3,707,100	+		IAI47_17480	0.72	-2.3
3,707,101	-		IAI47_17480	0.72	-0.6
3,707,101	-		IAI47_17480	0.72	-1.7
3,707,101	-		IAI47_17480	0.72	+1.0
3,707,101	-		IAI47_17480	0.72	-0.3
3,707,101	-		IAI47_17480	0.72	-1.2
3,707,142	-		IAI47_17480	0.76	-1.5
3,707,142	-		IAI47_17480	0.76	-0.3
3,707,142	-		IAI47_17480	0.76	-0.7
3,707,147	+		IAI47_17480	0.76	+0.8
3,707,147	+		IAI47_17480	0.76	+0.7
3,707,147	+		IAI47_17480	0.76	+0.3
3,707,147	+		IAI47_17480	0.76	+1.5
3,707,147	+		IAI47_17480	0.76	-0.5
3,707,147	+		IAI47_17480	0.76	-1.1
3,707,147	+		IAI47_17480	0.76	+0.5
3,707,147	+		IAI47_17480	0.76	+2.1
3,707,147	+		IAI47_17480	0.76	+0.0
3,707,148	-		IAI47_17480	0.76	-0.0
3,707,148	-		IAI47_17480	0.76	-0.4
3,707,148	-		IAI47_17480	0.76	-0.2
3,707,148	-		IAI47_17480	0.76	+0.2
3,707,148	-		IAI47_17480	0.76	+1.0
3,707,148	-		IAI47_17480	0.76	-0.2
3,707,172	+		IAI47_17480	0.78	+1.0
3,707,172	+		IAI47_17480	0.78	-0.6
3,707,172	+		IAI47_17480	0.78	-0.8
3,707,172	+		IAI47_17480	0.78	-2.0
3,707,172	+		IAI47_17480	0.78	-0.8
3,707,172	+		IAI47_17480	0.78	-0.0
3,707,172	+		IAI47_17480	0.78	+1.2
3,707,172	+		IAI47_17480	0.78	+3.1
3,707,172	+		IAI47_17480	0.78	-1.3
3,707,173	-		IAI47_17480	0.78	+0.4
3,707,173	-		IAI47_17480	0.78	+0.1
3,707,173	-		IAI47_17480	0.78	-1.1
3,707,173	-		IAI47_17480	0.78	-0.3
3,707,173	-		IAI47_17480	0.78	-0.2
3,707,173	-		IAI47_17480	0.78	-0.7
3,707,215	+		IAI47_17480	0.82	+0.9
3,707,216	-		IAI47_17480	0.82	-0.9
3,707,274	+		IAI47_17480	0.87	+0.0
3,707,316	-				+1.2
3,707,345	+				+0.5
3,707,345	+				-0.4
3,707,345	+				-1.2
3,707,345	+				-0.8
3,707,345	+				-0.3
3,707,345	+				+1.2
3,707,345	+				-0.2
3,707,346	-				-0.8
3,707,346	-				-0.2
3,707,346	-				+0.9
3,707,346	-				+1.1
3,707,346	-				-1.3
3,707,346	-				-0.8
3,707,346	-				+0.4
3,707,347	+				-0.3
3,707,347	+				-0.6
3,707,347	+				-1.0
3,707,347	+				-0.7
3,707,347	+				-0.5
3,707,348	-				-0.3
3,707,348	-				+2.2
3,707,348	-				+1.7
3,707,348	-				+0.4
3,707,348	-				-1.8
3,707,348	-				+0.4
3,707,348	-				-0.3
3,707,348	-				+1.1
3,707,348	-				-1.7
3,707,348	-				+1.6
3,707,402	+				+0.7
3,707,421	-				+1.2
3,707,460	-				-0.9
3,707,460	-				-0.5
3,707,475	+				-1.5
3,707,475	+				+0.8
3,707,476	-				-2.3
3,707,476	-				+0.2
3,707,476	-				+1.0
3,707,543	+		IAI47_17485	0.12	-1.8
3,707,543	+		IAI47_17485	0.12	-0.2
3,707,543	+		IAI47_17485	0.12	+0.6
3,707,544	-		IAI47_17485	0.12	-1.3
3,707,544	-		IAI47_17485	0.12	-2.3
3,707,547	+		IAI47_17485	0.12	-0.1
3,707,547	+		IAI47_17485	0.12	-1.6
3,707,547	+		IAI47_17485	0.12	-1.0
3,707,548	-		IAI47_17485	0.12	+1.7
3,707,548	-		IAI47_17485	0.12	-1.1
3,707,565	+		IAI47_17485	0.14	+0.8
3,707,566	-		IAI47_17485	0.14	-0.7
3,707,688	+		IAI47_17485	0.27	-1.0
3,707,689	-		IAI47_17485	0.27	-2.2
3,707,700	-		IAI47_17485	0.29	+0.4
3,707,717	+		IAI47_17485	0.31	+0.5
3,707,717	+		IAI47_17485	0.31	-1.3
3,707,717	+		IAI47_17485	0.31	-2.4
3,707,718	-		IAI47_17485	0.31	-0.1
3,707,753	+		IAI47_17485	0.34	+1.0
3,707,753	+		IAI47_17485	0.34	-0.8
3,707,756	+		IAI47_17485	0.35	-0.6
3,707,756	+		IAI47_17485	0.35	-1.4
3,707,756	+		IAI47_17485	0.35	-0.4
3,707,757	-		IAI47_17485	0.35	+1.1
3,707,757	-		IAI47_17485	0.35	+0.2
3,707,757	-		IAI47_17485	0.35	-1.1
3,707,757	-		IAI47_17485	0.35	+0.9
3,707,780	-		IAI47_17485	0.37	-0.1
3,707,780	-		IAI47_17485	0.37	+2.5
3,707,882	+		IAI47_17485	0.48	+0.5
3,707,883	-		IAI47_17485	0.49	-0.7
3,707,883	-		IAI47_17485	0.49	-0.4
3,707,883	-		IAI47_17485	0.49	-3.2
3,707,883	-		IAI47_17485	0.49	-0.6
3,707,883	-		IAI47_17485	0.49	-1.8
3,707,910	+		IAI47_17485	0.52	+0.1
3,707,911	-		IAI47_17485	0.52	-0.4
3,707,981	+		IAI47_17485	0.59	-0.2
3,707,981	+		IAI47_17485	0.59	-2.5
3,707,982	-		IAI47_17485	0.59	-1.3
3,707,982	-		IAI47_17485	0.59	-0.3
3,708,023	+		IAI47_17485	0.64	-0.3
3,708,023	+		IAI47_17485	0.64	-0.1
3,708,023	+		IAI47_17485	0.64	+0.0
3,708,024	-		IAI47_17485	0.64	-0.1
3,708,024	-		IAI47_17485	0.64	-0.6
3,708,024	-		IAI47_17485	0.64	+0.6
3,708,131	-		IAI47_17485	0.76	+0.4
3,708,177	+		IAI47_17485	0.81	-0.1
3,708,177	+		IAI47_17485	0.81	+1.3
3,708,178	-		IAI47_17485	0.81	+3.1
3,708,178	-		IAI47_17485	0.81	-1.0
3,708,178	-		IAI47_17485	0.81	+0.5
3,708,215	+		IAI47_17485	0.85	-1.3
3,708,215	+		IAI47_17485	0.85	-0.7
3,708,215	+		IAI47_17485	0.85	+0.4
3,708,324	+				-1.7
3,708,324	+				+0.3
3,708,325	-				-0.8
3,708,325	-				-0.2
3,708,336	+				-0.3
3,708,336	+				+1.8
3,708,337	-				+1.9
3,708,342	+				-0.9
3,708,343	-				+1.5
3,708,343	-				+0.5
3,708,343	-				+2.1
3,708,343	-				-0.8
3,708,343	-				+1.0
3,708,343	-				-0.7
3,708,357	+				-2.2
3,708,357	+				-0.5
3,708,357	+				-0.3
3,708,357	+				+1.0
3,708,357	+				-0.6
3,708,357	+				-0.7
3,708,357	+				+0.7
3,708,357	+				-0.6
3,708,358	-				-2.1
3,708,358	-				+0.2
3,708,358	-				+0.9
3,708,358	-				-0.2
3,708,358	-				+0.2
3,708,358	-				+0.1
3,708,358	-				+1.5
3,708,358	-				-2.1