Strain Fitness in Pantoea sp. MT58 around IAI47_17430

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,691,340	+				+0.4
3,691,496	-				-0.5
3,691,680	+		IAI47_17425	0.34	+0.4
3,691,680	+		IAI47_17425	0.34	-1.5
3,691,680	+		IAI47_17425	0.34	-0.9
3,691,681	-		IAI47_17425	0.34	-2.5
3,691,681	-		IAI47_17425	0.34	-0.4
3,691,681	-		IAI47_17425	0.34	+0.9
3,691,681	-		IAI47_17425	0.34	-0.3
3,691,715	+		IAI47_17425	0.41	+1.6
3,691,715	+		IAI47_17425	0.41	-1.4
3,691,715	+		IAI47_17425	0.41	+0.4
3,691,715	+		IAI47_17425	0.41	-0.4
3,691,715	+		IAI47_17425	0.41	-1.9
3,691,715	+		IAI47_17425	0.41	-0.2
3,691,716	-		IAI47_17425	0.41	-0.6
3,691,716	-		IAI47_17425	0.41	-0.2
3,691,716	-		IAI47_17425	0.41	+1.6
3,691,716	-		IAI47_17425	0.41	-0.0
3,691,716	-		IAI47_17425	0.41	-2.2
3,691,716	-		IAI47_17425	0.41	-0.7
3,691,719	+		IAI47_17425	0.42	-0.8
3,691,754	+		IAI47_17425	0.48	+1.3
3,691,820	+		IAI47_17425	0.61	-1.6
3,691,820	+		IAI47_17425	0.61	-0.6
3,691,820	+		IAI47_17425	0.61	+1.4
3,691,847	+		IAI47_17425	0.66	+0.0
3,691,864	+		IAI47_17425	0.69	+0.7
3,691,865	-		IAI47_17425	0.69	-0.8
3,691,865	-		IAI47_17425	0.69	-1.6
3,691,865	-		IAI47_17425	0.69	-2.3
3,691,865	-		IAI47_17425	0.69	+2.5
3,691,865	-		IAI47_17425	0.69	-0.3
3,691,928	-		IAI47_17425	0.81	+0.2
3,691,928	-		IAI47_17425	0.81	+2.2
3,691,928	-		IAI47_17425	0.81	-0.6
3,692,013	-				+0.0
3,692,013	-				-0.4
3,692,013	-				-2.7
3,692,021	-				-1.6
3,692,032	-				-0.0
3,692,100	+				+0.5
3,692,100	+				+0.8
3,692,107	+				+0.7
3,692,107	+				-1.3
3,692,120	+				+2.0
3,692,380	-		IAI47_17430	0.14	-0.1
3,692,380	-		IAI47_17430	0.14	-2.6
3,692,380	-		IAI47_17430	0.14	+0.2
3,692,380	-		IAI47_17430	0.14	+0.2
3,692,380	-		IAI47_17430	0.14	-0.9
3,692,444	+		IAI47_17430	0.24	+0.3
3,692,444	+		IAI47_17430	0.24	+0.5
3,692,444	+		IAI47_17430	0.24	-2.4
3,692,458	+		IAI47_17430	0.26	-2.0
3,692,458	+		IAI47_17430	0.26	+0.7
3,692,459	-		IAI47_17430	0.27	-1.8
3,692,459	-		IAI47_17430	0.27	+1.1
3,692,459	-		IAI47_17430	0.27	+0.2
3,692,478	+		IAI47_17430	0.30	+0.1
3,692,478	+		IAI47_17430	0.30	-0.1
3,692,478	+		IAI47_17430	0.30	+2.3
3,692,479	-		IAI47_17430	0.30	+3.3
3,692,513	+		IAI47_17430	0.35	-1.4
3,692,513	+		IAI47_17430	0.35	+1.9
3,692,513	+		IAI47_17430	0.35	-1.1
3,692,514	-		IAI47_17430	0.36	-0.9
3,692,524	-		IAI47_17430	0.37	-0.0
3,692,524	-		IAI47_17430	0.37	-0.2
3,692,581	-		IAI47_17430	0.47	-1.4
3,692,581	-		IAI47_17430	0.47	-0.5
3,692,618	+		IAI47_17430	0.53	-0.9
3,692,658	+		IAI47_17430	0.59	+0.5
3,692,658	+		IAI47_17430	0.59	+0.8
3,692,659	-		IAI47_17430	0.59	-1.4
3,692,659	-		IAI47_17430	0.59	+1.4
3,692,659	-		IAI47_17430	0.59	-3.0
3,692,659	-		IAI47_17430	0.59	-1.3
3,692,659	-		IAI47_17430	0.59	+0.1
3,692,659	-		IAI47_17430	0.59	-1.7
3,692,728	-		IAI47_17430	0.71	-2.2
3,692,728	-		IAI47_17430	0.71	+0.6
3,692,803	+		IAI47_17430	0.83	-1.3
3,692,804	-		IAI47_17430	0.83	-0.2
3,692,804	-		IAI47_17430	0.83	+0.2
3,692,813	+		IAI47_17430	0.84	+0.2
3,692,813	+		IAI47_17430	0.84	-0.0
3,692,813	+		IAI47_17430	0.84	-1.6
3,692,813	+		IAI47_17430	0.84	-0.4
3,692,813	+		IAI47_17430	0.84	+1.4
3,692,814	-		IAI47_17430	0.85	-0.0
3,692,814	-		IAI47_17430	0.85	+1.4
3,692,814	-		IAI47_17430	0.85	-0.1
3,692,814	-		IAI47_17430	0.85	-0.1
3,692,821	+		IAI47_17430	0.86	-0.2
3,692,822	-		IAI47_17430	0.86	+0.5
3,692,842	+		IAI47_17430	0.89	-0.3
3,692,901	+				+0.2
3,692,901	+				+1.5
3,692,901	+				+0.6
3,692,901	+				-1.0
3,692,902	-				-0.1
3,692,902	-				+2.0
3,692,902	-				-0.9
3,692,902	-				-2.0
3,692,929	+				-0.6
3,692,929	+				+1.9
3,692,929	+				-0.3
3,692,929	+				-0.6
3,692,929	+				+0.2
3,692,929	+				-0.2
3,692,929	+				-2.8
3,692,929	+				-0.5
3,692,930	-				+0.6
3,692,930	-				-1.3
3,692,930	-				-0.9
3,693,007	-				+0.3
3,693,031	-		IAI47_17435	0.12	-0.9
3,693,035	+		IAI47_17435	0.12	+0.0
3,693,035	+		IAI47_17435	0.12	+1.4
3,693,035	+		IAI47_17435	0.12	-0.3
3,693,035	+		IAI47_17435	0.12	-1.0
3,693,036	-		IAI47_17435	0.12	+0.1
3,693,036	-		IAI47_17435	0.12	-1.4
3,693,036	-		IAI47_17435	0.12	-2.1
3,693,036	-		IAI47_17435	0.12	+2.0
3,693,036	-		IAI47_17435	0.12	+0.8
3,693,036	-		IAI47_17435	0.12	-0.8
3,693,053	+		IAI47_17435	0.14	+1.1
3,693,095	+		IAI47_17435	0.20	+1.0
3,693,095	+		IAI47_17435	0.20	+0.4
3,693,095	+		IAI47_17435	0.20	+0.2
3,693,096	-		IAI47_17435	0.20	+0.8
3,693,096	-		IAI47_17435	0.20	-0.1
3,693,096	-		IAI47_17435	0.20	+0.2
3,693,096	-		IAI47_17435	0.20	-0.4
3,693,299	+		IAI47_17435	0.46	-0.7
3,693,300	-		IAI47_17435	0.46	+1.7
3,693,313	+		IAI47_17435	0.47	+0.6
3,693,314	-		IAI47_17435	0.48	+0.3
3,693,387	+		IAI47_17435	0.57	+0.9
3,693,387	+		IAI47_17435	0.57	+0.4
3,693,387	+		IAI47_17435	0.57	-1.0
3,693,388	-		IAI47_17435	0.57	-1.9
3,693,388	-		IAI47_17435	0.57	-0.4
3,693,404	+		IAI47_17435	0.59	-0.6
3,693,453	+		IAI47_17435	0.65	+0.5
3,693,454	-		IAI47_17435	0.65	+0.2
3,693,473	+		IAI47_17435	0.68	-0.5
3,693,501	+		IAI47_17435	0.71	+0.3
3,693,501	+		IAI47_17435	0.71	-0.2
3,693,502	-		IAI47_17435	0.72	+0.3
3,693,502	-		IAI47_17435	0.72	+0.1
3,693,517	-		IAI47_17435	0.73	+1.0
3,693,562	+		IAI47_17435	0.79	+0.0
3,693,562	+		IAI47_17435	0.79	-1.7
3,693,626	+		IAI47_17435	0.87	-0.0
3,693,627	-		IAI47_17435	0.87	+0.9
3,693,666	+				+0.4
3,693,667	-				-1.8
3,693,710	+				-0.1
3,693,710	+				+0.2
3,693,710	+				+0.2
3,693,710	+				+0.1
3,693,710	+				+0.2
3,693,710	+				-2.8
3,693,710	+				+0.4
3,693,711	-				+0.2
3,693,711	-				-1.0
3,693,711	-				-1.0
3,693,719	+				-0.4
3,693,719	+				+1.2
3,693,719	+				+0.8
3,693,720	-				-1.0
3,693,727	+				-2.1
3,693,727	+				-1.2
3,693,727	+				+1.8
3,693,727	+				+0.3
3,693,727	+				+0.1
3,693,727	+				+0.6
3,693,728	-				-0.7
3,693,728	-				+0.2
3,693,728	-				-0.8
3,693,728	-				-0.8
3,693,785	+				-0.5
3,693,785	+				-1.6
3,693,785	+				+0.0
3,693,785	+				+0.6
3,693,785	+				+0.5
3,693,785	+				+0.1
3,693,785	+				-2.2
3,693,785	+				-1.4
3,693,785	+				-1.9
3,693,786	-				-1.1
3,693,786	-				-1.0
3,693,786	-				+0.4
3,693,786	-				-1.9
3,693,786	-				-0.4
3,693,786	-				+0.7
3,693,786	-				+0.3
3,693,786	-				+0.4
3,693,786	-				-0.4
3,693,786	-				-1.5
3,693,789	+				+1.8
3,693,789	+				-0.7
3,693,789	+				+0.5
3,693,789	+				+0.8
3,693,790	-				-0.7
3,693,790	-				+0.2
3,693,790	-				-0.9
3,693,817	+				+0.1
3,693,818	-				-0.5
3,693,818	-				+0.5
3,693,840	+				+2.5
3,693,841	-				+2.4
3,693,845	+				+0.2
3,693,845	+				-0.0
3,693,845	+				-0.5
3,693,846	-				+1.5
3,693,846	-				+2.0
3,693,864	+				-0.6
3,693,864	+				-1.9
3,693,864	+				-0.7