Strain Fitness in Pantoea sp. MT58 around IAI47_16885

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,574,524	-		IAI47_16880	0.58	+0.1
3,574,571	+		IAI47_16880	0.60	+0.4
3,574,573	+		IAI47_16880	0.60	-0.6
3,574,573	+		IAI47_16880	0.60	+0.4
3,574,573	+		IAI47_16880	0.60	-1.8
3,574,573	+		IAI47_16880	0.60	-0.5
3,574,574	-		IAI47_16880	0.60	+0.4
3,574,574	-		IAI47_16880	0.60	-0.4
3,574,574	-		IAI47_16880	0.60	-3.7
3,574,574	-		IAI47_16880	0.60	-1.5
3,574,574	-		IAI47_16880	0.60	+0.1
3,574,574	-		IAI47_16880	0.60	+0.5
3,574,640	+		IAI47_16880	0.63	-1.5
3,574,640	+		IAI47_16880	0.63	-0.3
3,574,640	+		IAI47_16880	0.63	-1.0
3,574,640	+		IAI47_16880	0.63	+0.8
3,574,640	+		IAI47_16880	0.63	-1.9
3,574,641	-		IAI47_16880	0.63	+0.3
3,574,641	-		IAI47_16880	0.63	-0.6
3,574,641	-		IAI47_16880	0.63	-0.1
3,574,641	-		IAI47_16880	0.63	-2.4
3,574,643	+		IAI47_16880	0.63	-0.7
3,574,644	-		IAI47_16880	0.63	-1.6
3,574,644	-		IAI47_16880	0.63	-1.9
3,574,681	+		IAI47_16880	0.65	-2.0
3,574,681	+		IAI47_16880	0.65	-1.0
3,574,694	+		IAI47_16880	0.66	+0.5
3,574,694	+		IAI47_16880	0.66	-1.8
3,574,695	-		IAI47_16880	0.66	+0.8
3,574,701	+		IAI47_16880	0.66	+1.0
3,574,732	+		IAI47_16880	0.67	+1.2
3,574,732	+		IAI47_16880	0.67	-0.0
3,574,732	+		IAI47_16880	0.67	-2.5
3,574,732	+		IAI47_16880	0.67	+0.2
3,574,732	+		IAI47_16880	0.67	-1.9
3,574,732	+		IAI47_16880	0.67	-1.3
3,574,732	+		IAI47_16880	0.67	+0.7
3,574,732	+		IAI47_16880	0.67	-0.9
3,574,732	+		IAI47_16880	0.67	-1.4
3,574,732	+		IAI47_16880	0.67	+0.4
3,574,733	-		IAI47_16880	0.67	-0.0
3,574,733	-		IAI47_16880	0.67	+1.4
3,574,733	-		IAI47_16880	0.67	-0.8
3,574,733	-		IAI47_16880	0.67	-2.1
3,574,733	-		IAI47_16880	0.67	-1.6
3,574,733	-		IAI47_16880	0.67	-1.0
3,574,733	-		IAI47_16880	0.67	+0.2
3,574,733	-		IAI47_16880	0.67	-0.7
3,574,733	-		IAI47_16880	0.67	+0.9
3,574,733	-		IAI47_16880	0.67	+0.7
3,574,733	-		IAI47_16880	0.67	-1.1
3,574,772	+		IAI47_16880	0.69	-0.5
3,574,772	+		IAI47_16880	0.69	-1.0
3,574,772	+		IAI47_16880	0.69	-0.8
3,574,773	-		IAI47_16880	0.69	-1.3
3,574,783	+		IAI47_16880	0.70	-2.1
3,574,784	-		IAI47_16880	0.70	-0.9
3,574,976	+		IAI47_16880	0.79	+1.4
3,574,977	-		IAI47_16880	0.79	+0.1
3,575,008	+		IAI47_16880	0.80	-1.2
3,575,008	+		IAI47_16880	0.80	-1.7
3,575,108	+		IAI47_16880	0.85	-1.3
3,575,108	+		IAI47_16880	0.85	-1.3
3,575,108	+		IAI47_16880	0.85	-1.7
3,575,109	-		IAI47_16880	0.85	-1.4
3,575,109	-		IAI47_16880	0.85	-0.3
3,575,109	-		IAI47_16880	0.85	-0.2
3,575,109	-		IAI47_16880	0.85	+0.1
3,575,109	-		IAI47_16880	0.85	-1.7
3,575,109	-		IAI47_16880	0.85	-0.5
3,575,147	+		IAI47_16880	0.87	+0.0
3,575,213	+		IAI47_16880	0.90	-1.2
3,575,222	+				-0.5
3,575,234	+				-0.6
3,575,234	+				+0.5
3,575,234	+				+0.5
3,575,235	-				+0.1
3,575,280	-				-0.0
3,575,293	-				-0.4
3,575,324	+				-0.3
3,575,324	+				-0.3
3,575,324	+				-1.9
3,575,324	+				+1.4
3,575,324	+				-1.3
3,575,324	+				+0.3
3,575,324	+				-1.6
3,575,325	-				+1.4
3,575,325	-				+0.2
3,575,325	-				-0.1
3,575,325	-				-0.7
3,575,325	-				-3.0
3,575,325	-				-1.5
3,575,325	-				+3.2
3,575,325	-				+0.7
3,575,325	-				-0.6
3,575,325	-				+0.4
3,575,325	-				-3.5
3,575,325	-				-0.6
3,575,325	-				-0.4
3,575,325	-				+1.8
3,575,325	-				-0.5
3,575,325	-				-0.0
3,575,343	+				-2.4
3,575,343	+				-0.7
3,575,343	+				-2.4
3,575,343	+				-0.4
3,575,343	+				-0.9
3,575,343	+				-0.9
3,575,344	-				-1.0
3,575,344	-				-0.7
3,575,344	-				-0.1
3,575,344	-				-0.6
3,575,344	-				-1.4
3,575,354	+				-1.2
3,575,354	+				-1.6
3,575,355	-				-0.2
3,575,395	-				-3.6
3,575,443	+				+2.4
3,575,444	-				+1.4
3,575,444	-				-0.1
3,575,444	-				+0.4
3,575,459	-				-0.4
3,575,501	+				+0.0
3,575,502	-				-0.5
3,575,516	-				+1.4
3,575,652	+				-1.9
3,575,652	+				-0.1
3,575,653	-				+0.6
3,575,653	-				-0.8
3,575,653	-				-0.8
3,575,673	+		IAI47_16885	0.11	+0.3
3,575,673	+		IAI47_16885	0.11	-0.6
3,575,673	+		IAI47_16885	0.11	-0.2
3,575,673	+		IAI47_16885	0.11	+3.7
3,575,673	+		IAI47_16885	0.11	-0.8
3,575,674	-		IAI47_16885	0.11	-0.8
3,575,674	-		IAI47_16885	0.11	-1.4
3,575,674	-		IAI47_16885	0.11	+0.8
3,575,674	-		IAI47_16885	0.11	+0.9
3,575,770	+		IAI47_16885	0.18	-1.1
3,575,770	+		IAI47_16885	0.18	-0.6
3,575,770	+		IAI47_16885	0.18	+2.2
3,575,770	+		IAI47_16885	0.18	-0.1
3,575,771	-		IAI47_16885	0.18	-0.4
3,575,771	-		IAI47_16885	0.18	-0.5
3,575,771	-		IAI47_16885	0.18	-1.0
3,575,811	+		IAI47_16885	0.21	-1.4
3,575,811	+		IAI47_16885	0.21	-2.4
3,575,811	+		IAI47_16885	0.21	-0.1
3,575,812	-		IAI47_16885	0.21	+1.0
3,575,812	-		IAI47_16885	0.21	+0.8
3,575,819	+		IAI47_16885	0.21	-0.0
3,575,820	-		IAI47_16885	0.22	+0.4
3,575,887	+		IAI47_16885	0.26	-1.1
3,575,888	-		IAI47_16885	0.26	+1.4
3,575,894	+		IAI47_16885	0.27	+2.1
3,575,994	+		IAI47_16885	0.34	+0.6
3,575,994	+		IAI47_16885	0.34	+0.3
3,575,994	+		IAI47_16885	0.34	-1.2
3,575,994	+		IAI47_16885	0.34	-2.3
3,575,995	-		IAI47_16885	0.34	+0.5
3,575,995	-		IAI47_16885	0.34	-1.3
3,575,995	-		IAI47_16885	0.34	+1.3
3,575,997	+		IAI47_16885	0.34	-1.9
3,575,997	+		IAI47_16885	0.34	-1.1
3,575,997	+		IAI47_16885	0.34	-1.3
3,576,040	+		IAI47_16885	0.37	-0.0
3,576,040	+		IAI47_16885	0.37	-0.5
3,576,041	-		IAI47_16885	0.37	+2.3
3,576,041	-		IAI47_16885	0.37	-1.5
3,576,041	-		IAI47_16885	0.37	+0.9
3,576,041	-		IAI47_16885	0.37	+0.4
3,576,043	+		IAI47_16885	0.38	-0.6
3,576,043	+		IAI47_16885	0.38	+0.3
3,576,043	+		IAI47_16885	0.38	-0.5
3,576,043	+		IAI47_16885	0.38	-0.4
3,576,043	+		IAI47_16885	0.38	-0.1
3,576,044	-		IAI47_16885	0.38	-0.9
3,576,044	-		IAI47_16885	0.38	-0.2
3,576,055	-		IAI47_16885	0.38	-1.6
3,576,077	+		IAI47_16885	0.40	-1.1
3,576,211	+		IAI47_16885	0.50	-1.9
3,576,213	+		IAI47_16885	0.50	+1.4
3,576,213	+		IAI47_16885	0.50	+0.9
3,576,213	+		IAI47_16885	0.50	+0.6
3,576,214	-		IAI47_16885	0.50	+0.2
3,576,214	-		IAI47_16885	0.50	+1.1
3,576,214	-		IAI47_16885	0.50	-0.3
3,576,214	-		IAI47_16885	0.50	+1.8
3,576,294	+		IAI47_16885	0.56	+0.1
3,576,295	-		IAI47_16885	0.56	+2.0
3,576,304	+		IAI47_16885	0.56	-0.2
3,576,305	-		IAI47_16885	0.56	-0.9
3,576,318	+		IAI47_16885	0.57	-0.5
3,576,318	+		IAI47_16885	0.57	+1.3
3,576,318	+		IAI47_16885	0.57	+0.8
3,576,319	-		IAI47_16885	0.58	-1.9
3,576,319	-		IAI47_16885	0.58	-0.9
3,576,319	-		IAI47_16885	0.58	+0.6
3,576,326	-		IAI47_16885	0.58	+1.1
3,576,327	+		IAI47_16885	0.58	-2.2
3,576,327	+		IAI47_16885	0.58	+1.2
3,576,327	+		IAI47_16885	0.58	-1.5
3,576,327	+		IAI47_16885	0.58	+0.7
3,576,328	-		IAI47_16885	0.58	+0.7
3,576,328	-		IAI47_16885	0.58	+0.5
3,576,349	-		IAI47_16885	0.60	-1.7
3,576,349	-		IAI47_16885	0.60	+4.2
3,576,349	-		IAI47_16885	0.60	+0.9
3,576,349	-		IAI47_16885	0.60	+0.7
3,576,387	+		IAI47_16885	0.62	+2.1
3,576,387	+		IAI47_16885	0.62	+2.6
3,576,591	-		IAI47_16885	0.77	+0.0
3,576,603	+		IAI47_16885	0.78	-0.9
3,576,603	+		IAI47_16885	0.78	-0.0
3,576,675	+		IAI47_16885	0.83	+0.5
3,576,675	+		IAI47_16885	0.83	+0.0
3,576,675	+		IAI47_16885	0.83	+1.5
3,576,676	-		IAI47_16885	0.83	+1.4
3,576,676	-		IAI47_16885	0.83	-0.0
3,576,683	+		IAI47_16885	0.84	+0.2
3,576,683	+		IAI47_16885	0.84	-1.0
3,576,683	+		IAI47_16885	0.84	+0.2
3,576,683	+		IAI47_16885	0.84	+0.8
3,576,683	+		IAI47_16885	0.84	-0.0
3,576,684	-		IAI47_16885	0.84	+0.0
3,576,684	-		IAI47_16885	0.84	+0.1
3,576,684	-		IAI47_16885	0.84	-0.4
3,576,741	+		IAI47_16885	0.88	-0.3
3,576,741	+		IAI47_16885	0.88	+0.3
3,576,742	-		IAI47_16885	0.88	+1.2
3,576,742	-		IAI47_16885	0.88	-1.4
3,576,811	+				-1.3
3,576,811	+				+0.4
3,576,811	+				+0.2
3,576,811	+				+0.1
3,576,812	-				-0.0
3,576,812	-				+0.2
3,576,812	-				+1.2
3,576,812	-				-0.5
3,576,812	-				-0.6
3,576,812	-				+0.5
3,576,812	-				+0.5
3,576,813	+				+1.3
3,576,813	+				-1.6
3,576,814	-				-0.8
3,576,814	-				+0.3
3,576,814	-				-1.5
3,576,814	-				+1.8
3,576,830	+				-1.1
3,576,830	+				+1.1
3,576,831	-				+0.3
3,576,831	-				+0.6
3,576,863	-				+0.5
3,576,981	+				-1.2
3,576,982	-				-0.9
3,576,982	-				+1.8
3,576,982	-				+1.2
3,576,982	-				-1.5
3,576,982	-				+0.4
3,577,019	-				-1.7
3,577,372	+		IAI47_16890	0.15	-0.9
3,577,372	+		IAI47_16890	0.15	+0.3
3,577,372	+		IAI47_16890	0.15	-0.3
3,577,372	+		IAI47_16890	0.15	-0.1
3,577,373	-		IAI47_16890	0.15	-0.3
3,577,374	+		IAI47_16890	0.15	+0.8
3,577,374	+		IAI47_16890	0.15	+0.6
3,577,374	+		IAI47_16890	0.15	+0.2
3,577,374	+		IAI47_16890	0.15	-1.4
3,577,374	+		IAI47_16890	0.15	-1.2
3,577,374	+		IAI47_16890	0.15	-1.3
3,577,374	+		IAI47_16890	0.15	+1.4
3,577,374	+		IAI47_16890	0.15	-0.4
3,577,374	+		IAI47_16890	0.15	+0.1
3,577,374	+		IAI47_16890	0.15	+0.4
3,577,374	+		IAI47_16890	0.15	-1.1
3,577,374	+		IAI47_16890	0.15	+1.0
3,577,374	+		IAI47_16890	0.15	-0.2
3,577,374	+		IAI47_16890	0.15	-0.6
3,577,374	+		IAI47_16890	0.15	-0.9
3,577,374	+		IAI47_16890	0.15	-0.6
3,577,374	+		IAI47_16890	0.15	+1.5
3,577,374	+		IAI47_16890	0.15	+0.4
3,577,374	+		IAI47_16890	0.15	+0.0
3,577,374	+		IAI47_16890	0.15	-0.1
3,577,374	+		IAI47_16890	0.15	-2.0
3,577,374	+		IAI47_16890	0.15	+1.2
3,577,374	+		IAI47_16890	0.15	-0.1
3,577,374	+		IAI47_16890	0.15	-0.8
3,577,374	+		IAI47_16890	0.15	-0.2
3,577,374	+		IAI47_16890	0.15	-0.7
3,577,374	+		IAI47_16890	0.15	+0.6
3,577,375	-		IAI47_16890	0.15	+0.2
3,577,375	-		IAI47_16890	0.15	+0.3
3,577,375	-		IAI47_16890	0.15	-0.6
3,577,375	-		IAI47_16890	0.15	-0.0
3,577,375	-		IAI47_16890	0.15	-1.7
3,577,375	-		IAI47_16890	0.15	-0.5
3,577,375	-		IAI47_16890	0.15	+0.6
3,577,375	-		IAI47_16890	0.15	-0.7
3,577,375	-		IAI47_16890	0.15	-1.5
3,577,375	-		IAI47_16890	0.15	+0.7
3,577,375	-		IAI47_16890	0.15	+0.4
3,577,375	-		IAI47_16890	0.15	-0.4
3,577,375	-		IAI47_16890	0.15	-0.7
3,577,375	-		IAI47_16890	0.15	-0.6
3,577,375	-		IAI47_16890	0.15	+0.4
3,577,375	-		IAI47_16890	0.15	+0.9
3,577,375	-		IAI47_16890	0.15	-2.4
3,577,375	-		IAI47_16890	0.15	-0.9
3,577,375	-		IAI47_16890	0.15	+1.1
3,577,375	-		IAI47_16890	0.15	+0.4
3,577,375	-		IAI47_16890	0.15	-1.6
3,577,375	-		IAI47_16890	0.15	+0.8
3,577,375	-		IAI47_16890	0.15	-0.5
3,577,375	-		IAI47_16890	0.15	+1.3
3,577,383	+		IAI47_16890	0.15	+0.9
3,577,383	+		IAI47_16890	0.15	-0.1
3,577,383	+		IAI47_16890	0.15	+0.1
3,577,383	+		IAI47_16890	0.15	+0.5
3,577,383	+		IAI47_16890	0.15	-1.9
3,577,383	+		IAI47_16890	0.15	-0.4
3,577,384	-		IAI47_16890	0.15	+0.6
3,577,384	-		IAI47_16890	0.15	-1.1
3,577,404	+		IAI47_16890	0.16	+0.6
3,577,404	+		IAI47_16890	0.16	+0.9
3,577,404	+		IAI47_16890	0.16	+2.8
3,577,404	+		IAI47_16890	0.16	-3.3
3,577,404	+		IAI47_16890	0.16	-0.1
3,577,405	-		IAI47_16890	0.16	+0.5
3,577,405	-		IAI47_16890	0.16	+0.4
3,577,516	+		IAI47_16890	0.20	-0.3
3,577,531	+		IAI47_16890	0.20	-1.3
3,577,532	-		IAI47_16890	0.20	+0.3
3,577,532	-		IAI47_16890	0.20	+0.6
3,577,538	+		IAI47_16890	0.20	+0.5
3,577,576	+		IAI47_16890	0.21	-0.3
3,577,576	+		IAI47_16890	0.21	-0.5
3,577,576	+		IAI47_16890	0.21	-1.1
3,577,576	+		IAI47_16890	0.21	+1.3
3,577,577	-		IAI47_16890	0.21	-0.4
3,577,688	-		IAI47_16890	0.25	+1.4
3,577,695	+		IAI47_16890	0.25	-2.6
3,577,695	+		IAI47_16890	0.25	+0.2
3,577,695	+		IAI47_16890	0.25	-1.9
3,577,695	+		IAI47_16890	0.25	+0.8
3,577,695	+		IAI47_16890	0.25	+0.6
3,577,695	+		IAI47_16890	0.25	+0.8
3,577,695	+		IAI47_16890	0.25	-1.3
3,577,695	+		IAI47_16890	0.25	+1.8
3,577,695	+		IAI47_16890	0.25	+0.5
3,577,695	+		IAI47_16890	0.25	+0.7
3,577,695	+		IAI47_16890	0.25	+1.1
3,577,695	+		IAI47_16890	0.25	-0.7
3,577,696	-		IAI47_16890	0.25	-1.2
3,577,696	-		IAI47_16890	0.25	+1.1
3,577,696	-		IAI47_16890	0.25	+0.7
3,577,696	-		IAI47_16890	0.25	-1.0
3,577,696	-		IAI47_16890	0.25	-0.6
3,577,696	-		IAI47_16890	0.25	-0.3
3,577,707	-		IAI47_16890	0.26	-1.1
3,577,707	-		IAI47_16890	0.26	-0.0
3,577,759	-		IAI47_16890	0.27	-0.8
3,577,759	-		IAI47_16890	0.27	-2.8
3,577,759	-		IAI47_16890	0.27	+0.1
3,577,759	-		IAI47_16890	0.27	+1.0
3,577,777	-		IAI47_16890	0.28	-1.0
3,577,777	-		IAI47_16890	0.28	+0.9
3,577,810	+		IAI47_16890	0.29	+0.7
3,577,811	-		IAI47_16890	0.29	+0.1
3,577,811	-		IAI47_16890	0.29	+1.3
3,577,811	-		IAI47_16890	0.29	-0.1
3,577,822	+		IAI47_16890	0.29	+0.8
3,577,822	+		IAI47_16890	0.29	-0.7
3,577,822	+		IAI47_16890	0.29	-0.9
3,577,823	-		IAI47_16890	0.29	-0.1
3,577,823	-		IAI47_16890	0.29	-1.2