Strain Fitness in Pantoea sp. MT58 around IAI47_15995

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,377,439	-		IAI47_15990	0.84	-0.1
3,377,439	-		IAI47_15990	0.84	+0.2
3,377,439	-		IAI47_15990	0.84	+0.4
3,377,439	-		IAI47_15990	0.84	-0.2
3,377,440	+		IAI47_15990	0.84	+2.1
3,377,440	+		IAI47_15990	0.84	+1.6
3,377,440	+		IAI47_15990	0.84	-1.3
3,377,440	+		IAI47_15990	0.84	+2.0
3,377,440	+		IAI47_15990	0.84	-0.7
3,377,440	+		IAI47_15990	0.84	+0.8
3,377,440	+		IAI47_15990	0.84	+0.7
3,377,440	+		IAI47_15990	0.84	-0.1
3,377,441	-		IAI47_15990	0.84	+0.6
3,377,441	-		IAI47_15990	0.84	+0.3
3,377,441	-		IAI47_15990	0.84	-0.2
3,377,441	-		IAI47_15990	0.84	+2.1
3,377,441	-		IAI47_15990	0.84	+2.6
3,377,459	+		IAI47_15990	0.86	-1.3
3,377,540	+				+0.5
3,377,540	+				-0.5
3,377,540	+				-1.4
3,377,540	+				-0.7
3,377,541	-				+1.9
3,377,541	-				-0.7
3,377,582	+				+1.0
3,377,582	+				+1.0
3,377,583	-				+0.5
3,377,608	+				-0.4
3,377,608	+				-1.4
3,377,608	+				+0.5
3,377,608	+				+0.2
3,377,608	+				-0.6
3,377,608	+				+2.1
3,377,608	+				+0.2
3,377,608	+				+0.5
3,377,608	+				-0.6
3,377,608	+				-0.6
3,377,608	+				+2.2
3,377,608	+				+0.3
3,377,608	+				+0.5
3,377,609	-				+2.2
3,377,609	-				-0.8
3,377,609	-				+2.9
3,377,609	-				-0.2
3,377,609	-				+0.4
3,377,609	-				+0.2
3,377,609	-				-0.1
3,377,609	-				+1.9
3,377,609	-				+0.7
3,377,609	-				-0.2
3,377,609	-				-1.8
3,377,609	-				+0.6
3,377,609	-				+0.9
3,377,609	-				-0.5
3,377,609	-				+0.2
3,377,609	-				-0.5
3,377,609	-				-0.2
3,377,609	-				-1.0
3,377,609	-				-0.4
3,377,612	+				+0.7
3,377,612	+				+0.5
3,377,612	+				-1.6
3,377,612	+				+0.3
3,377,612	+				+0.9
3,377,612	+				+0.9
3,377,612	+				-1.1
3,377,612	+				-0.8
3,377,612	+				-0.2
3,377,612	+				+0.6
3,377,612	-				+1.4
3,377,613	-				+1.4
3,377,613	-				+1.3
3,377,613	-				+0.1
3,377,613	-				-1.1
3,377,613	-				-0.2
3,377,613	-				+2.0
3,377,613	-				-1.0
3,377,613	-				-0.2
3,377,613	-				+2.0
3,377,616	+				-0.7
3,377,616	+				-0.5
3,377,616	+				+0.1
3,377,616	+				-0.3
3,377,616	+				+0.7
3,377,616	+				-0.2
3,377,616	+				-0.3
3,377,617	-				-0.5
3,377,617	-				+1.5
3,377,617	-				+3.5
3,377,617	-				+1.4
3,377,617	-				-0.1
3,377,617	-				+0.2
3,377,617	-				+1.7
3,377,617	-				+1.1
3,377,643	+				-1.1
3,377,644	-				+0.9
3,377,644	-				+0.0
3,377,667	+				+1.9
3,377,756	-				-0.7
3,377,756	-				-1.3
3,377,762	-				+0.1
3,377,801	+				+0.8
3,377,801	+				+1.1
3,377,801	+				+0.7
3,377,802	-				-0.7
3,377,807	+				-0.6
3,377,807	+				+1.0
3,377,808	-				+0.9
3,377,808	-				-0.7
3,377,808	-				+2.9
3,377,808	-				+0.7
3,377,878	+				+0.4
3,377,878	+				+0.7
3,377,879	-				-0.0
3,377,879	-				+0.9
3,377,887	+				-0.5
3,377,888	-				+0.4
3,377,888	-				-0.4
3,377,888	-				-0.5
3,377,893	-				-0.0
3,377,932	-				+0.6
3,377,937	-				-0.8
3,377,951	+				-0.8
3,377,951	+				-0.9
3,377,951	+				+0.6
3,377,952	-				-0.4
3,377,952	-				+0.1
3,377,952	-				+0.2
3,377,992	+				-1.1
3,377,992	+				-0.6
3,377,992	+				-0.7
3,377,993	-				+0.2
3,377,993	-				+0.5
3,377,996	+				+1.8
3,377,996	+				-0.4
3,378,052	+				+0.4
3,378,052	+				+1.9
3,378,053	-				+0.3
3,378,070	+				+0.2
3,378,070	+				+2.1
3,378,070	+				+0.3
3,378,070	+				+0.6
3,378,070	+				-0.4
3,378,071	-				+1.5
3,378,086	-				-0.9
3,378,121	+				+2.2
3,378,121	+				+0.4
3,378,122	-				+0.7
3,378,125	+				+1.0
3,378,140	+				+1.3
3,378,141	-				+0.5
3,378,141	-				-1.1
3,378,155	+				-0.7
3,378,156	-				+0.4
3,378,156	-				-0.6
3,378,156	-				+0.5
3,378,174	+				+0.8
3,378,174	+				+0.9
3,378,212	+				+1.9
3,378,305	+				+1.8
3,378,305	+				+0.4
3,378,306	-				+0.1
3,378,321	+				+0.1
3,378,325	+				+0.5
3,378,326	-				+0.9
3,378,333	+				+0.5
3,378,333	+				+2.0
3,378,333	+				+1.3
3,378,334	-				+0.9
3,378,334	-				+1.5
3,378,334	-				+1.0
3,378,334	-				+1.1
3,378,334	-				-0.5
3,378,358	+				+1.5
3,378,359	-				+0.2
3,378,404	+				+1.8
3,378,404	+				+0.9
3,378,404	+				+1.1
3,378,404	+				+0.8
3,378,404	+				+0.9
3,378,404	+				-0.9
3,378,404	+				+0.2
3,378,404	+				+1.5
3,378,404	+				-1.0
3,378,404	+				-2.3
3,378,404	+				-0.7
3,378,404	+				-1.6
3,378,408	+				+0.6
3,378,408	+				+0.8
3,378,408	+				+0.4
3,378,408	+				+1.8
3,378,408	+				+0.2
3,378,408	+				+0.8
3,378,409	-				-0.0
3,378,409	-				+2.1
3,378,409	-				+0.8
3,378,409	-				+0.9
3,378,409	-				+0.5
3,378,409	-				+0.0
3,378,409	-				-0.0
3,378,409	-				+2.6
3,378,423	+				-0.9
3,378,423	+				+0.9
3,378,426	-				-1.8
3,378,467	+		IAI47_15995	0.33	-2.1
3,378,467	+		IAI47_15995	0.33	+0.3
3,378,470	+		IAI47_15995	0.37	+1.3
3,378,474	-		IAI47_15995	0.42	-0.5
3,378,541	+				+0.8
3,378,571	-				+0.8
3,378,571	-				-0.2
3,378,598	+				+0.3
3,378,598	+				+1.3
3,378,599	-				+0.8
3,378,599	-				-0.1
3,378,608	+				-0.6
3,378,608	+				+1.9
3,378,608	+				+0.5
3,378,608	+				+0.4
3,378,608	+				-0.2
3,378,609	-				-0.9
3,378,609	-				-1.5
3,378,667	+				-0.1
3,378,667	+				-0.1
3,378,667	+				+1.5
3,378,667	+				+1.1
3,378,668	-				-0.2
3,378,736	+				+1.3
3,378,736	+				+0.0
3,378,736	+				-1.2
3,378,736	+				-0.2
3,378,736	+				-1.8
3,378,737	-				+1.3
3,378,737	-				+1.1
3,378,737	-				+3.1
3,378,737	-				-0.6
3,378,800	+		IAI47_16000	0.12	+1.9
3,378,800	+		IAI47_16000	0.12	-1.5
3,378,842	-		IAI47_16000	0.15	-0.1
3,378,851	+		IAI47_16000	0.15	-1.8
3,378,852	-		IAI47_16000	0.15	+0.7
3,378,864	+		IAI47_16000	0.16	+1.0
3,378,864	+		IAI47_16000	0.16	-1.1
3,378,864	+		IAI47_16000	0.16	+0.1
3,378,864	+		IAI47_16000	0.16	-0.1
3,378,864	+		IAI47_16000	0.16	-1.1
3,378,865	-		IAI47_16000	0.16	-0.1
3,378,865	-		IAI47_16000	0.16	-0.9
3,378,865	-		IAI47_16000	0.16	-0.5
3,378,865	-		IAI47_16000	0.16	+1.5
3,378,865	-		IAI47_16000	0.16	-0.9
3,378,896	+		IAI47_16000	0.18	-0.5
3,378,896	+		IAI47_16000	0.18	-1.1
3,378,896	+		IAI47_16000	0.18	+1.2
3,378,902	+		IAI47_16000	0.19	-2.3
3,378,902	+		IAI47_16000	0.19	-0.4
3,378,903	-		IAI47_16000	0.19	+1.4
3,378,903	-		IAI47_16000	0.19	+1.3
3,378,903	-		IAI47_16000	0.19	-1.2
3,378,903	-		IAI47_16000	0.19	+1.7
3,378,903	-		IAI47_16000	0.19	-1.9
3,378,903	-		IAI47_16000	0.19	-0.6
3,378,979	+		IAI47_16000	0.23	+2.0
3,378,979	+		IAI47_16000	0.23	+0.3
3,378,979	+		IAI47_16000	0.23	+1.3
3,378,979	+		IAI47_16000	0.23	-0.2
3,378,979	+		IAI47_16000	0.23	-0.6
3,378,980	-		IAI47_16000	0.24	+1.2
3,378,980	-		IAI47_16000	0.24	+2.9
3,378,980	-		IAI47_16000	0.24	-1.5
3,378,980	-		IAI47_16000	0.24	-0.8
3,378,980	-		IAI47_16000	0.24	-0.9
3,378,983	+		IAI47_16000	0.24	+0.5
3,378,983	+		IAI47_16000	0.24	+1.3
3,378,983	+		IAI47_16000	0.24	-0.3
3,378,983	+		IAI47_16000	0.24	+0.6
3,378,983	+		IAI47_16000	0.24	+0.7
3,378,983	+		IAI47_16000	0.24	-1.6
3,378,983	+		IAI47_16000	0.24	+1.5
3,378,983	+		IAI47_16000	0.24	-0.4
3,378,983	+		IAI47_16000	0.24	-0.7
3,378,983	+		IAI47_16000	0.24	+0.5
3,378,983	+		IAI47_16000	0.24	-0.6
3,378,983	+		IAI47_16000	0.24	-1.1
3,378,983	+		IAI47_16000	0.24	-0.2
3,378,983	+		IAI47_16000	0.24	+0.6
3,378,984	-		IAI47_16000	0.24	-1.0
3,378,984	-		IAI47_16000	0.24	+1.2
3,378,984	-		IAI47_16000	0.24	-0.1
3,378,984	-		IAI47_16000	0.24	+0.9
3,378,984	-		IAI47_16000	0.24	-0.3
3,378,984	-		IAI47_16000	0.24	-0.0
3,378,984	-		IAI47_16000	0.24	-0.3
3,378,984	-		IAI47_16000	0.24	+1.4
3,378,984	-		IAI47_16000	0.24	-0.7
3,378,984	-		IAI47_16000	0.24	-0.6
3,378,984	-		IAI47_16000	0.24	+0.2
3,378,984	-		IAI47_16000	0.24	+1.2
3,378,984	-		IAI47_16000	0.24	-0.1
3,378,984	-		IAI47_16000	0.24	-0.6
3,378,984	-		IAI47_16000	0.24	+0.6
3,379,001	+		IAI47_16000	0.25	+0.3
3,379,001	+		IAI47_16000	0.25	-0.2
3,379,002	-		IAI47_16000	0.25	-1.8
3,379,005	+		IAI47_16000	0.25	-1.2
3,379,005	+		IAI47_16000	0.25	+0.3
3,379,005	+		IAI47_16000	0.25	-0.5
3,379,005	+		IAI47_16000	0.25	+0.9
3,379,005	+		IAI47_16000	0.25	+0.4
3,379,006	-		IAI47_16000	0.25	-1.5
3,379,006	-		IAI47_16000	0.25	-0.6
3,379,047	-		IAI47_16000	0.28	+0.5
3,379,071	-		IAI47_16000	0.29	+1.1
3,379,088	+		IAI47_16000	0.30	-1.0
3,379,131	+		IAI47_16000	0.33	+0.3
3,379,131	+		IAI47_16000	0.33	-0.7
3,379,150	-		IAI47_16000	0.34	+1.2
3,379,150	-		IAI47_16000	0.34	+0.4
3,379,150	-		IAI47_16000	0.34	-1.3
3,379,160	+		IAI47_16000	0.35	+0.5
3,379,161	-		IAI47_16000	0.35	+1.7
3,379,187	+		IAI47_16000	0.37	+2.0
3,379,187	+		IAI47_16000	0.37	-1.0
3,379,187	+		IAI47_16000	0.37	+0.8
3,379,188	-		IAI47_16000	0.37	+1.3
3,379,188	-		IAI47_16000	0.37	+0.5
3,379,188	-		IAI47_16000	0.37	-1.3
3,379,197	-		IAI47_16000	0.37	+1.5
3,379,205	+		IAI47_16000	0.38	+0.3
3,379,206	-		IAI47_16000	0.38	-0.5
3,379,206	-		IAI47_16000	0.38	+1.3
3,379,218	-		IAI47_16000	0.39	+0.1
3,379,235	+		IAI47_16000	0.40	-0.1
3,379,307	-		IAI47_16000	0.44	-0.7
3,379,355	+		IAI47_16000	0.48	+1.7
3,379,356	-		IAI47_16000	0.48	-0.8
3,379,356	-		IAI47_16000	0.48	+0.0
3,379,381	+		IAI47_16000	0.49	+0.6
3,379,381	+		IAI47_16000	0.49	+1.7
3,379,381	+		IAI47_16000	0.49	-0.8
3,379,381	+		IAI47_16000	0.49	-0.4
3,379,381	+		IAI47_16000	0.49	+2.1
3,379,381	+		IAI47_16000	0.49	+1.2
3,379,381	+		IAI47_16000	0.49	+0.3
3,379,382	-		IAI47_16000	0.49	-0.1
3,379,382	-		IAI47_16000	0.49	+0.1
3,379,382	-		IAI47_16000	0.49	+0.9
3,379,392	-		IAI47_16000	0.50	-0.5
3,379,410	+		IAI47_16000	0.51	-1.3
3,379,415	+		IAI47_16000	0.51	+2.7
3,379,463	+		IAI47_16000	0.54	-0.4
3,379,464	-		IAI47_16000	0.55	+1.0
3,379,464	-		IAI47_16000	0.55	-0.7
3,379,464	-		IAI47_16000	0.55	+0.2
3,379,505	+		IAI47_16000	0.57	+0.4
3,379,505	+		IAI47_16000	0.57	+1.2
3,379,505	+		IAI47_16000	0.57	+0.3