Strain Fitness in Pantoea sp. MT58 around IAI47_13845

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,930,383	-				+1.7
2,930,391	-				-0.1
2,930,470	-		IAI47_13840	0.15	+2.8
2,930,530	-		IAI47_13840	0.26	+0.3
2,930,530	-		IAI47_13840	0.26	-0.4
2,930,530	-		IAI47_13840	0.26	-0.8
2,930,530	-		IAI47_13840	0.26	+0.8
2,930,530	-		IAI47_13840	0.26	+1.1
2,930,533	-		IAI47_13840	0.26	+0.6
2,930,557	-		IAI47_13840	0.31	-0.4
2,930,557	-		IAI47_13840	0.31	-1.2
2,930,557	-		IAI47_13840	0.31	-0.2
2,930,640	-		IAI47_13840	0.46	+0.8
2,930,640	-		IAI47_13840	0.46	+1.8
2,930,656	-		IAI47_13840	0.49	-0.9
2,930,656	-		IAI47_13840	0.49	+0.2
2,930,662	-		IAI47_13840	0.50	+1.3
2,930,694	-		IAI47_13840	0.56	+0.8
2,930,884	-				-0.4
2,930,896	-				+1.0
2,930,896	-				+0.2
2,930,898	-				-0.1
2,930,898	-				+0.9
2,930,938	-				+0.2
2,930,938	-				+0.2
2,930,945	-				+2.2
2,930,994	-				-0.7
2,930,994	-				-0.0
2,930,994	-				-0.9
2,930,994	-				+2.3
2,930,995	+				+0.4
2,930,995	+				+1.4
2,930,995	+				-0.5
2,930,995	+				-0.4
2,930,995	+				-1.7
2,930,996	-				+0.7
2,930,996	-				-2.0
2,930,996	-				-0.6
2,930,996	-				-0.7
2,930,996	-				-0.2
2,931,026	+				-0.2
2,931,026	+				-1.8
2,931,027	-				-0.6
2,931,027	-				-0.3
2,931,027	-				-0.8
2,931,027	-				-0.2
2,931,038	+				+0.2
2,931,038	+				-1.0
2,931,039	-				-0.1
2,931,040	+				-0.6
2,931,041	-				+0.5
2,931,041	-				+0.5
2,931,041	-				-0.9
2,931,081	-				-2.3
2,931,098	+				+0.7
2,931,098	+				+1.4
2,931,098	+				-1.7
2,931,098	+				+0.4
2,931,098	+				-0.5
2,931,099	-				+1.8
2,931,099	-				-0.2
2,931,099	-				+4.0
2,931,099	-				-1.0
2,931,105	+				-0.0
2,931,105	+				-1.7
2,931,106	-				+0.7
2,931,106	-				-0.7
2,931,148	+				+0.2
2,931,148	+				-0.0
2,931,149	-				+0.2
2,931,149	-				+0.1
2,931,153	+				-0.7
2,931,153	+				-0.6
2,931,153	+				+1.4
2,931,153	+				+0.1
2,931,153	+				-1.3
2,931,154	-				+0.3
2,931,154	-				+0.8
2,931,154	-				-0.4
2,931,154	-				+0.6
2,931,154	-				+1.8
2,931,154	-				+1.8
2,931,154	-				+0.7
2,931,154	-				+0.2
2,931,154	-				+2.1
2,931,154	-				-0.7
2,931,154	-				-0.9
2,931,154	-				-0.5
2,931,154	-				+2.8
2,931,173	-				+0.7
2,931,173	-				-0.8
2,931,185	-				+0.5
2,931,248	-				-0.9
2,931,275	-		IAI47_13845	0.12	+1.1
2,931,374	+		IAI47_13845	0.25	+2.6
2,931,374	+		IAI47_13845	0.25	+1.3
2,931,374	+		IAI47_13845	0.25	-0.8
2,931,375	-		IAI47_13845	0.25	+1.1
2,931,375	-		IAI47_13845	0.25	+1.2
2,931,375	-		IAI47_13845	0.25	+0.5
2,931,375	-		IAI47_13845	0.25	-0.5
2,931,375	-		IAI47_13845	0.25	+0.4
2,931,381	+		IAI47_13845	0.26	+0.4
2,931,381	+		IAI47_13845	0.26	+0.7
2,931,382	-		IAI47_13845	0.26	-1.9
2,931,394	+		IAI47_13845	0.27	-3.0
2,931,394	+		IAI47_13845	0.27	+2.0
2,931,394	+		IAI47_13845	0.27	-1.7
2,931,394	+		IAI47_13845	0.27	-1.0
2,931,460	+		IAI47_13845	0.36	-1.2
2,931,460	+		IAI47_13845	0.36	-0.4
2,931,540	-		IAI47_13845	0.46	-2.2
2,931,628	+		IAI47_13845	0.58	+0.2
2,931,628	+		IAI47_13845	0.58	-1.2
2,931,628	+		IAI47_13845	0.58	-0.3
2,931,629	-		IAI47_13845	0.58	+1.6
2,931,714	+		IAI47_13845	0.69	+3.0
2,931,715	-		IAI47_13845	0.69	+0.3
2,931,724	+		IAI47_13845	0.70	+2.7
2,931,724	+		IAI47_13845	0.70	+1.4
2,931,725	-		IAI47_13845	0.71	-0.7
2,931,725	-		IAI47_13845	0.71	-1.3
2,931,728	+		IAI47_13845	0.71	+2.4
2,931,728	+		IAI47_13845	0.71	+1.1
2,931,728	+		IAI47_13845	0.71	-1.4
2,931,728	+		IAI47_13845	0.71	+0.7
2,931,728	+		IAI47_13845	0.71	-1.1
2,931,728	+		IAI47_13845	0.71	-0.5
2,931,729	-		IAI47_13845	0.71	-2.3
2,931,729	-		IAI47_13845	0.71	+0.2
2,931,729	-		IAI47_13845	0.71	+0.1
2,931,729	-		IAI47_13845	0.71	-2.0
2,931,729	-		IAI47_13845	0.71	-0.1
2,931,729	-		IAI47_13845	0.71	+1.8
2,931,729	-		IAI47_13845	0.71	-0.6
2,931,729	-		IAI47_13845	0.71	-0.1
2,931,784	+		IAI47_13845	0.78	+0.3
2,931,785	-		IAI47_13845	0.78	-0.8
2,931,785	-		IAI47_13845	0.78	-1.3
2,931,806	+		IAI47_13845	0.81	+2.6
2,931,806	+		IAI47_13845	0.81	-1.0
2,931,806	+		IAI47_13845	0.81	+1.5
2,931,807	-		IAI47_13845	0.81	+1.8
2,931,807	-		IAI47_13845	0.81	+1.2
2,931,835	-		IAI47_13845	0.85	-0.0
2,931,835	-		IAI47_13845	0.85	-0.1
2,931,947	+				+1.0
2,931,947	+				-1.8
2,931,947	+				+0.3
2,931,957	+				+0.2
2,931,957	+				+1.0
2,931,957	+				-0.2
2,931,957	+				-0.6
2,931,958	-				+0.1
2,931,958	-				+0.3
2,931,958	-				-1.0
2,931,958	-				+0.8
2,931,958	-				+0.3
2,932,004	+				-1.2
2,932,004	+				-1.2
2,932,004	+				-0.3
2,932,005	-				+0.5
2,932,005	-				+0.1
2,932,005	-				+0.7
2,932,005	-				-0.2
2,932,005	-				+1.5
2,932,059	+				-0.9
2,932,059	+				-0.4
2,932,059	+				+0.8
2,932,060	-				+0.3
2,932,064	+				+0.9
2,932,064	+				-0.3
2,932,065	-				-1.5
2,932,065	-				+0.5
2,932,066	+				-1.5
2,932,109	+				+0.1
2,932,109	+				+1.6
2,932,110	-				+0.8
2,932,112	+				+0.7
2,932,112	+				+1.4
2,932,112	+				-1.6
2,932,112	+				+3.0
2,932,112	+				-0.5
2,932,113	-				-1.4
2,932,243	+		IAI47_13850	0.45	+3.1
2,932,243	+		IAI47_13850	0.45	-1.2
2,932,244	-		IAI47_13850	0.46	-2.2
2,932,312	+		IAI47_13850	0.70	-0.0
2,932,312	+		IAI47_13850	0.70	-0.5
2,932,312	+		IAI47_13850	0.70	-1.0
2,932,312	+		IAI47_13850	0.70	-1.4
2,932,312	+		IAI47_13850	0.70	-1.9
2,932,313	-		IAI47_13850	0.71	+0.1
2,932,313	-		IAI47_13850	0.71	-0.0
2,932,315	+		IAI47_13850	0.71	-2.0
2,932,315	+		IAI47_13850	0.71	-0.5
2,932,316	-		IAI47_13850	0.72	+0.6
2,932,316	-		IAI47_13850	0.72	-0.8
2,932,316	-		IAI47_13850	0.72	-0.3
2,932,333	+		IAI47_13850	0.78	-0.0
2,932,433	-				-0.9
2,932,461	+				+0.2
2,932,461	+				-0.5
2,932,461	+				-0.7
2,932,464	+				-0.9
2,932,508	+				-2.3