Strain Fitness in Pantoea sp. MT58 around IAI47_13390

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,838,374	+		IAI47_13385	0.67	-0.5
2,838,374	+		IAI47_13385	0.67	-1.6
2,838,374	+		IAI47_13385	0.67	-1.0
2,838,374	+		IAI47_13385	0.67	-0.3
2,838,374	+		IAI47_13385	0.67	-0.4
2,838,374	+		IAI47_13385	0.67	-2.5
2,838,375	-		IAI47_13385	0.67	-0.0
2,838,375	-		IAI47_13385	0.67	-0.5
2,838,375	-		IAI47_13385	0.67	-0.4
2,838,415	+		IAI47_13385	0.69	+0.4
2,838,416	-		IAI47_13385	0.69	-1.8
2,838,515	+		IAI47_13385	0.72	+3.8
2,838,515	+		IAI47_13385	0.72	+2.6
2,838,515	+		IAI47_13385	0.72	-0.0
2,838,516	-		IAI47_13385	0.72	+0.4
2,838,516	-		IAI47_13385	0.72	-1.1
2,838,516	-		IAI47_13385	0.72	+0.1
2,838,560	+		IAI47_13385	0.74	+0.6
2,838,561	-		IAI47_13385	0.74	-1.4
2,838,561	-		IAI47_13385	0.74	+2.0
2,838,567	+		IAI47_13385	0.74	-0.6
2,838,567	+		IAI47_13385	0.74	+0.8
2,838,567	+		IAI47_13385	0.74	+2.0
2,838,567	+		IAI47_13385	0.74	-0.5
2,838,568	-		IAI47_13385	0.74	+0.7
2,838,568	-		IAI47_13385	0.74	-0.2
2,838,568	-		IAI47_13385	0.74	+1.3
2,838,568	-		IAI47_13385	0.74	+0.3
2,838,568	-		IAI47_13385	0.74	-0.5
2,838,568	-		IAI47_13385	0.74	+2.7
2,838,587	+		IAI47_13385	0.75	+0.9
2,838,587	+		IAI47_13385	0.75	+0.6
2,838,588	-		IAI47_13385	0.75	+1.2
2,838,588	-		IAI47_13385	0.75	-0.7
2,838,593	+		IAI47_13385	0.75	+1.5
2,838,593	+		IAI47_13385	0.75	-0.5
2,838,593	+		IAI47_13385	0.75	+0.2
2,838,593	+		IAI47_13385	0.75	+0.9
2,838,594	-		IAI47_13385	0.75	+0.6
2,838,594	-		IAI47_13385	0.75	-0.4
2,838,609	-		IAI47_13385	0.76	-0.0
2,838,635	+		IAI47_13385	0.77	-0.7
2,838,636	-		IAI47_13385	0.77	-0.4
2,838,638	+		IAI47_13385	0.77	+0.1
2,838,638	+		IAI47_13385	0.77	+1.7
2,838,720	+		IAI47_13385	0.80	+0.8
2,838,720	+		IAI47_13385	0.80	-1.0
2,838,776	+		IAI47_13385	0.82	-1.5
2,838,776	+		IAI47_13385	0.82	-0.9
2,838,776	+		IAI47_13385	0.82	-0.1
2,838,776	+		IAI47_13385	0.82	-1.6
2,838,777	-		IAI47_13385	0.82	+0.1
2,838,777	-		IAI47_13385	0.82	+0.5
2,838,777	-		IAI47_13385	0.82	+0.5
2,838,777	-		IAI47_13385	0.82	+1.2
2,838,777	-		IAI47_13385	0.82	+1.3
2,838,777	-		IAI47_13385	0.82	+1.7
2,838,782	-		IAI47_13385	0.82	+0.8
2,838,782	-		IAI47_13385	0.82	-0.2
2,838,833	+		IAI47_13385	0.84	-0.0
2,838,833	+		IAI47_13385	0.84	+0.7
2,838,833	+		IAI47_13385	0.84	-0.0
2,838,833	+		IAI47_13385	0.84	+1.0
2,838,833	+		IAI47_13385	0.84	+0.4
2,838,834	-		IAI47_13385	0.84	+1.7
2,838,834	-		IAI47_13385	0.84	+0.1
2,838,834	-		IAI47_13385	0.84	-0.1
2,838,834	-		IAI47_13385	0.84	+1.3
2,838,834	-		IAI47_13385	0.84	+1.2
2,838,842	+		IAI47_13385	0.85	+0.3
2,838,843	-		IAI47_13385	0.85	+0.6
2,838,843	-		IAI47_13385	0.85	+0.4
2,838,843	-		IAI47_13385	0.85	-1.7
2,838,843	-		IAI47_13385	0.85	-0.1
2,838,903	-		IAI47_13385	0.87	+0.3
2,838,920	+		IAI47_13385	0.88	-0.2
2,838,920	+		IAI47_13385	0.88	-1.8
2,838,921	-		IAI47_13385	0.88	+2.1
2,838,921	-		IAI47_13385	0.88	+0.5
2,838,921	-		IAI47_13385	0.88	-1.5
2,838,921	-		IAI47_13385	0.88	+2.5
2,838,921	-		IAI47_13385	0.88	-0.3
2,838,921	-		IAI47_13385	0.88	+1.1
2,838,921	-		IAI47_13385	0.88	-0.2
2,838,921	-		IAI47_13385	0.88	+0.8
2,838,921	-		IAI47_13385	0.88	+0.4
2,838,921	-		IAI47_13385	0.88	+1.0
2,838,923	-		IAI47_13385	0.88	+0.2
2,839,074	+				-0.5
2,839,075	+				+1.2
2,839,076	-				+0.4
2,839,076	-				-0.5
2,839,076	-				+0.5
2,839,108	+				+0.7
2,839,109	-				-0.0
2,839,109	-				+0.9
2,839,109	-				+1.4
2,839,109	-				-0.3
2,839,109	-				+1.6
2,839,118	+				-0.1
2,839,118	+				+1.0
2,839,119	-				+1.9
2,839,152	-				-1.8
2,839,152	-				-0.2
2,839,152	-				+0.1
2,839,183	+				+0.3
2,839,183	+				-1.5
2,839,184	-				+0.8
2,839,184	-				-0.8
2,839,244	+				+0.2
2,839,245	-				+0.5
2,839,245	-				-0.7
2,839,272	-				+2.0
2,839,272	-				-1.8
2,839,272	-				-0.3
2,839,293	-				-1.3
2,839,380	+				-0.2
2,839,380	+				+1.1
2,839,380	+				-1.5
2,839,380	+				-1.2
2,839,380	+				+1.2
2,839,381	-				-2.7
2,839,381	-				+0.3
2,839,400	+				-4.5
2,839,400	+				-2.4
2,839,400	+				-0.4
2,839,400	+				-1.6
2,839,400	+				+2.7
2,839,401	-				-1.1
2,839,439	+				-1.8
2,839,440	-				+0.2
2,839,440	-				-1.0
2,839,488	+				+0.8
2,839,489	-				+2.4
2,839,489	-				-1.7
2,839,489	-				-0.1
2,839,586	+		IAI47_13390	0.10	-1.3
2,839,586	+		IAI47_13390	0.10	-0.8
2,839,587	-		IAI47_13390	0.10	-1.7
2,839,587	-		IAI47_13390	0.10	+0.8
2,839,603	+		IAI47_13390	0.11	-2.3
2,839,620	-		IAI47_13390	0.11	-1.3
2,839,643	+		IAI47_13390	0.12	-1.8
2,839,643	+		IAI47_13390	0.12	-2.1
2,839,643	+		IAI47_13390	0.12	+1.5
2,839,644	-		IAI47_13390	0.12	-0.9
2,839,647	+		IAI47_13390	0.13	+0.6
2,839,664	+		IAI47_13390	0.13	-2.2
2,839,664	+		IAI47_13390	0.13	-1.6
2,839,664	+		IAI47_13390	0.13	+1.0
2,839,664	+		IAI47_13390	0.13	-2.2
2,839,665	-		IAI47_13390	0.13	-2.6
2,839,665	-		IAI47_13390	0.13	-1.5
2,839,722	-		IAI47_13390	0.16	-1.7
2,839,722	-		IAI47_13390	0.16	-3.6
2,839,743	+		IAI47_13390	0.16	+2.8
2,839,787	+		IAI47_13390	0.18	-0.5
2,839,788	-		IAI47_13390	0.18	-2.5
2,839,788	-		IAI47_13390	0.18	-1.1
2,839,877	+		IAI47_13390	0.22	-0.8
2,839,967	+		IAI47_13390	0.26	-0.7
2,839,967	+		IAI47_13390	0.26	-2.0
2,839,979	+		IAI47_13390	0.26	-1.5
2,839,980	-		IAI47_13390	0.26	-2.8
2,839,980	-		IAI47_13390	0.26	-0.7
2,839,999	+		IAI47_13390	0.27	-0.7
2,839,999	+		IAI47_13390	0.27	-1.2
2,839,999	+		IAI47_13390	0.27	+0.2
2,839,999	+		IAI47_13390	0.27	-2.8
2,840,000	-		IAI47_13390	0.27	-2.4
2,840,000	-		IAI47_13390	0.27	-2.7
2,840,000	-		IAI47_13390	0.27	-0.8
2,840,000	-		IAI47_13390	0.27	-0.2
2,840,107	+		IAI47_13390	0.31	-0.7
2,840,107	+		IAI47_13390	0.31	+1.0
2,840,107	+		IAI47_13390	0.31	-2.6
2,840,107	+		IAI47_13390	0.31	-2.5
2,840,107	+		IAI47_13390	0.31	+0.8
2,840,107	+		IAI47_13390	0.31	+1.7
2,840,107	+		IAI47_13390	0.31	+0.5
2,840,107	+		IAI47_13390	0.31	-1.5
2,840,107	+		IAI47_13390	0.31	-0.7
2,840,107	+		IAI47_13390	0.31	+1.0
2,840,108	-		IAI47_13390	0.31	-1.8
2,840,108	-		IAI47_13390	0.31	-1.4
2,840,108	-		IAI47_13390	0.31	-2.6
2,840,108	-		IAI47_13390	0.31	-1.2
2,840,108	-		IAI47_13390	0.31	-3.4
2,840,108	-		IAI47_13390	0.31	-0.1
2,840,108	-		IAI47_13390	0.31	-2.0
2,840,108	-		IAI47_13390	0.31	-3.0
2,840,108	-		IAI47_13390	0.31	-1.0
2,840,108	-		IAI47_13390	0.31	-1.5
2,840,108	-		IAI47_13390	0.31	-1.8
2,840,130	+		IAI47_13390	0.32	+0.3
2,840,131	-		IAI47_13390	0.32	+0.5
2,840,144	+		IAI47_13390	0.33	+0.3
2,840,144	+		IAI47_13390	0.33	-2.5
2,840,307	-		IAI47_13390	0.40	-2.9
2,840,339	+		IAI47_13390	0.41	-0.5
2,840,340	-		IAI47_13390	0.41	-0.6
2,840,340	-		IAI47_13390	0.41	-0.6
2,840,340	-		IAI47_13390	0.41	-1.2
2,840,372	+		IAI47_13390	0.42	+1.8
2,840,372	+		IAI47_13390	0.42	-1.3
2,840,372	+		IAI47_13390	0.42	-1.6
2,840,373	-		IAI47_13390	0.42	-0.6
2,840,373	-		IAI47_13390	0.42	-2.1
2,840,373	-		IAI47_13390	0.42	-0.5
2,840,373	-		IAI47_13390	0.42	-0.9
2,840,373	-		IAI47_13390	0.42	-1.8
2,840,373	-		IAI47_13390	0.42	-1.1
2,840,425	+		IAI47_13390	0.44	+0.6
2,840,425	+		IAI47_13390	0.44	-2.4
2,840,426	-		IAI47_13390	0.44	-1.2
2,840,426	-		IAI47_13390	0.44	-0.5
2,840,426	-		IAI47_13390	0.44	+1.3
2,840,464	+		IAI47_13390	0.46	-1.7
2,840,465	-		IAI47_13390	0.46	-2.4
2,840,465	-		IAI47_13390	0.46	-1.3
2,840,465	-		IAI47_13390	0.46	-1.5
2,840,487	-		IAI47_13390	0.47	-0.8
2,840,487	-		IAI47_13390	0.47	+2.4
2,840,491	+		IAI47_13390	0.47	-2.0
2,840,491	+		IAI47_13390	0.47	-0.5
2,840,491	+		IAI47_13390	0.47	-0.1
2,840,492	-		IAI47_13390	0.47	-1.5
2,840,646	-		IAI47_13390	0.53	-2.2
2,840,690	+		IAI47_13390	0.55	-2.9
2,840,690	+		IAI47_13390	0.55	-0.7
2,840,691	-		IAI47_13390	0.55	-2.7
2,840,713	+		IAI47_13390	0.56	-1.8
2,840,713	+		IAI47_13390	0.56	-1.5
2,840,714	-		IAI47_13390	0.56	-0.1
2,840,714	-		IAI47_13390	0.56	-0.7
2,840,714	-		IAI47_13390	0.56	-2.4
2,840,718	-		IAI47_13390	0.56	-1.8
2,840,741	+		IAI47_13390	0.57	-2.1
2,840,741	+		IAI47_13390	0.57	-0.5
2,840,741	+		IAI47_13390	0.57	-0.4
2,840,741	+		IAI47_13390	0.57	-1.3
2,840,742	-		IAI47_13390	0.57	-1.5
2,840,778	+		IAI47_13390	0.59	-1.5
2,840,779	-		IAI47_13390	0.59	+0.8
2,840,779	-		IAI47_13390	0.59	-0.9
2,840,779	-		IAI47_13390	0.59	-1.8
2,840,834	+		IAI47_13390	0.61	+0.0
2,840,834	+		IAI47_13390	0.61	-0.1
2,840,834	+		IAI47_13390	0.61	-1.6
2,840,883	+		IAI47_13390	0.63	-1.4
2,840,883	+		IAI47_13390	0.63	-0.4
2,840,884	-		IAI47_13390	0.63	-1.9
2,840,884	-		IAI47_13390	0.63	-2.6
2,840,884	-		IAI47_13390	0.63	-0.5
2,840,963	+		IAI47_13390	0.66	+0.2
2,840,963	+		IAI47_13390	0.66	-1.6
2,840,990	+		IAI47_13390	0.67	-1.7
2,840,991	-		IAI47_13390	0.67	-0.7
2,840,991	-		IAI47_13390	0.67	-0.7
2,841,021	-		IAI47_13390	0.69	-2.3
2,841,047	+		IAI47_13390	0.70	-1.7
2,841,048	-		IAI47_13390	0.70	-1.5
2,841,050	+		IAI47_13390	0.70	-1.1
2,841,051	-		IAI47_13390	0.70	-1.2
2,841,134	+		IAI47_13390	0.73	-0.7
2,841,134	+		IAI47_13390	0.73	+0.8
2,841,134	+		IAI47_13390	0.73	-0.4
2,841,135	-		IAI47_13390	0.73	-0.2
2,841,135	-		IAI47_13390	0.73	-1.7
2,841,135	-		IAI47_13390	0.73	-2.9
2,841,263	+		IAI47_13390	0.79	+2.1
2,841,263	+		IAI47_13390	0.79	+0.2
2,841,264	-		IAI47_13390	0.79	-2.5
2,841,350	+		IAI47_13390	0.82	-1.3
2,841,368	+		IAI47_13390	0.83	+0.5
2,841,368	+		IAI47_13390	0.83	-1.8
2,841,369	-		IAI47_13390	0.83	-0.8
2,841,369	-		IAI47_13390	0.83	-2.4
2,841,530	+		IAI47_13390	0.90	-1.5
2,841,530	+		IAI47_13390	0.90	-2.9
2,841,530	+		IAI47_13390	0.90	+0.6
2,841,530	+		IAI47_13390	0.90	-1.4
2,841,530	+		IAI47_13390	0.90	-1.3
2,841,531	-		IAI47_13390	0.90	-0.4
2,841,620	+				-0.2
2,841,620	+				-0.8
2,841,705	-				-0.7
2,841,705	-				-0.5
2,841,756	+				-0.7
2,841,757	-				-0.5
2,841,757	-				-2.0
2,841,757	-				+0.8
2,841,777	+				+0.1
2,841,777	+				-1.9
2,841,777	+				-1.4
2,841,778	-				+0.2
2,841,778	-				-0.2
2,841,778	-				-0.7
2,841,778	-				-1.6
2,841,778	-				-0.9
2,841,778	-				-2.1
2,841,778	-				-0.2
2,841,778	-				-1.9
2,841,778	-				-1.1
2,841,779	+				-1.1
2,841,779	+				+0.5
2,841,779	+				-0.8
2,841,779	+				-1.4
2,841,779	+				-0.5
2,841,780	-				+0.1
2,841,780	-				-1.1
2,841,780	-				-1.4
2,841,785	+				-2.1
2,841,785	+				+0.2
2,841,785	+				-2.3
2,841,785	+				-2.9
2,841,785	+				-2.7
2,841,785	+				-0.8
2,841,785	+				-0.2
2,841,785	+				-1.5
2,841,786	-				-0.7
2,841,786	-				-0.4
2,841,786	-				-1.8
2,841,786	-				+0.8
2,841,786	-				+0.7
2,841,786	-				-1.9
2,841,786	-				-0.1
2,841,786	-				-2.8
2,841,791	+				-1.8
2,841,792	-				-0.2
2,841,792	-				-0.0
2,841,792	-				-0.5
2,841,807	+				-1.0
2,841,808	-				+0.3
2,841,840	+				-2.7
2,841,845	+				-1.3
2,841,846	-				+1.1
2,841,846	-				-2.0
2,841,870	+				+0.4
2,841,870	+				-1.7
2,841,870	+				-1.1
2,841,870	+				-1.8
2,841,871	-				+0.2
2,841,876	+				-1.0
2,841,876	+				+0.5
2,841,876	+				+0.1
2,841,877	-				+0.9
2,841,948	+				-0.9
2,841,948	+				+1.5
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2,842,684	+		IAI47_13395	0.71	+3.3
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2,842,685	-		IAI47_13395	0.71	-0.4
2,842,756	-		IAI47_13395	0.78	-0.0