Strain Fitness in Pantoea sp. MT58 around IAI47_09495

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,002,740	-		IAI47_09485	0.30	-0.0
2,002,746	-		IAI47_09485	0.31	+0.6
2,002,759	-		IAI47_09485	0.33	-0.9
2,002,763	+		IAI47_09485	0.34	+1.4
2,002,763	+		IAI47_09485	0.34	-1.4
2,002,763	+		IAI47_09485	0.34	+1.2
2,002,763	+		IAI47_09485	0.34	+1.8
2,002,763	+		IAI47_09485	0.34	-2.4
2,002,764	-		IAI47_09485	0.34	-0.2
2,002,764	-		IAI47_09485	0.34	-0.4
2,002,764	-		IAI47_09485	0.34	-0.8
2,002,764	-		IAI47_09485	0.34	-0.9
2,002,764	-		IAI47_09485	0.34	+0.6
2,002,764	-		IAI47_09485	0.34	-0.7
2,002,764	-		IAI47_09485	0.34	+2.2
2,002,837	+		IAI47_09485	0.45	-0.4
2,002,837	+		IAI47_09485	0.45	+0.9
2,002,838	-		IAI47_09485	0.45	-1.4
2,002,838	-		IAI47_09485	0.45	+1.3
2,002,852	+		IAI47_09485	0.47	+1.2
2,002,852	+		IAI47_09485	0.47	-0.8
2,002,852	+		IAI47_09485	0.47	+0.1
2,002,852	+		IAI47_09485	0.47	-0.2
2,002,852	+		IAI47_09485	0.47	+0.1
2,002,853	-		IAI47_09485	0.47	+0.0
2,002,853	-		IAI47_09485	0.47	-2.7
2,002,853	-		IAI47_09485	0.47	+1.2
2,002,853	-		IAI47_09485	0.47	-0.3
2,002,853	-		IAI47_09485	0.47	-0.8
2,002,853	-		IAI47_09485	0.47	+0.5
2,002,897	-		IAI47_09485	0.54	-2.2
2,002,971	-		IAI47_09485	0.65	-0.4
2,002,995	-		IAI47_09485	0.69	-1.3
2,003,033	+		IAI47_09485	0.75	+0.2
2,003,047	+		IAI47_09485	0.77	-0.6
2,003,047	+		IAI47_09485	0.77	-0.6
2,003,048	-		IAI47_09485	0.77	-0.1
2,003,048	-		IAI47_09485	0.77	+2.0
2,003,048	-		IAI47_09485	0.77	-0.1
2,003,093	+		IAI47_09485	0.84	-0.2
2,003,093	+		IAI47_09485	0.84	+0.4
2,003,094	-		IAI47_09485	0.84	+0.7
2,003,094	-		IAI47_09485	0.84	-2.0
2,003,094	-		IAI47_09485	0.84	-0.6
2,003,159	+				-0.8
2,003,182	-				-1.9
2,003,182	-				-0.6
2,003,186	+				+0.1
2,003,187	-				-0.2
2,003,187	-				-0.6
2,003,187	-				-1.4
2,003,194	-				-0.5
2,003,204	+				-0.8
2,003,204	+				+2.1
2,003,214	+				+0.7
2,003,214	+				+1.5
2,003,215	-				-1.7
2,003,215	-				-1.3
2,003,217	+				+0.1
2,003,218	-				-0.1
2,003,218	-				+1.9
2,003,218	-				-1.3
2,003,255	+				+0.2
2,003,256	-				-1.0
2,003,256	-				-0.3
2,003,256	-				+0.6
2,003,256	-				-0.0
2,003,264	+				-1.2
2,003,265	-				+1.0
2,003,340	+				+0.2
2,003,340	+				-0.5
2,003,340	+				+1.4
2,003,340	+				-1.4
2,003,340	+				+1.5
2,003,341	-				-1.7
2,003,341	-				-0.3
2,003,355	+				+1.8
2,003,355	+				+1.1
2,003,356	-				+1.3
2,003,356	-				-2.3
2,003,356	-				+2.7
2,003,356	-				-1.1
2,003,356	-				-0.5
2,003,359	-				+0.7
2,003,420	+		IAI47_09490	0.13	-1.5
2,003,420	+		IAI47_09490	0.13	-0.3
2,003,421	-		IAI47_09490	0.14	-0.6
2,003,421	-		IAI47_09490	0.14	+1.9
2,003,423	+		IAI47_09490	0.14	-0.0
2,003,423	+		IAI47_09490	0.14	-0.5
2,003,423	+		IAI47_09490	0.14	-1.3
2,003,423	+		IAI47_09490	0.14	+0.2
2,003,423	+		IAI47_09490	0.14	-0.5
2,003,423	+		IAI47_09490	0.14	+0.1
2,003,423	+		IAI47_09490	0.14	+0.2
2,003,424	-		IAI47_09490	0.15	-0.7
2,003,439	+		IAI47_09490	0.20	+0.9
2,003,454	+		IAI47_09490	0.26	+0.2
2,003,455	-		IAI47_09490	0.26	-0.4
2,003,455	-		IAI47_09490	0.26	-0.9
2,003,600	+		IAI47_09490	0.79	+0.3
2,003,600	+		IAI47_09490	0.79	+0.7
2,003,601	-		IAI47_09490	0.79	+1.4
2,003,633	+				+0.3
2,003,672	+				-0.9
2,003,691	+				+1.8
2,003,691	+				+1.1
2,003,691	+				+0.2
2,003,691	+				+0.9
2,003,691	+				-0.7
2,003,692	-				-0.3
2,003,752	-				+1.5
2,003,758	-				-0.6
2,003,801	-				+2.1
2,003,801	-				-1.6
2,003,801	-				-0.7
2,003,804	+		IAI47_09495	0.10	+0.7
2,003,805	-		IAI47_09495	0.10	+0.7
2,003,827	+		IAI47_09495	0.12	-2.4
2,003,827	+		IAI47_09495	0.12	-0.8
2,003,827	+		IAI47_09495	0.12	-1.8
2,003,827	+		IAI47_09495	0.12	-1.0
2,003,828	-		IAI47_09495	0.12	-2.4
2,003,828	-		IAI47_09495	0.12	+1.5
2,003,828	-		IAI47_09495	0.12	-1.9
2,003,832	+		IAI47_09495	0.13	-0.8
2,003,833	-		IAI47_09495	0.13	-1.3
2,003,886	+		IAI47_09495	0.18	+0.5
2,003,886	+		IAI47_09495	0.18	-0.7
2,003,886	+		IAI47_09495	0.18	-1.4
2,003,887	-		IAI47_09495	0.18	-0.6
2,003,887	-		IAI47_09495	0.18	+1.5
2,003,887	-		IAI47_09495	0.18	+0.1
2,003,887	-		IAI47_09495	0.18	-1.8
2,003,918	+		IAI47_09495	0.22	-0.2
2,003,918	+		IAI47_09495	0.22	-0.0
2,003,918	+		IAI47_09495	0.22	-0.9
2,003,918	+		IAI47_09495	0.22	-1.7
2,003,919	-		IAI47_09495	0.22	-1.7
2,003,919	-		IAI47_09495	0.22	+0.3
2,003,919	-		IAI47_09495	0.22	-0.9
2,003,919	-		IAI47_09495	0.22	-1.7
2,003,919	-		IAI47_09495	0.22	-1.1
2,003,919	-		IAI47_09495	0.22	-0.3
2,003,919	-		IAI47_09495	0.22	-2.1
2,004,093	+		IAI47_09495	0.39	+0.4
2,004,093	+		IAI47_09495	0.39	-1.9
2,004,094	-		IAI47_09495	0.39	-1.8
2,004,094	-		IAI47_09495	0.39	-2.4
2,004,094	-		IAI47_09495	0.39	-1.3
2,004,112	+		IAI47_09495	0.41	-0.3
2,004,113	-		IAI47_09495	0.41	+1.0
2,004,124	+		IAI47_09495	0.42	+0.2
2,004,124	+		IAI47_09495	0.42	-0.8
2,004,124	+		IAI47_09495	0.42	+0.4
2,004,125	-		IAI47_09495	0.42	-0.9
2,004,134	+		IAI47_09495	0.43	-0.5
2,004,134	+		IAI47_09495	0.43	-2.0
2,004,134	+		IAI47_09495	0.43	-1.4
2,004,134	+		IAI47_09495	0.43	+0.6
2,004,135	-		IAI47_09495	0.43	-1.0
2,004,135	-		IAI47_09495	0.43	-1.3
2,004,135	-		IAI47_09495	0.43	+0.2
2,004,135	-		IAI47_09495	0.43	-1.1
2,004,135	-		IAI47_09495	0.43	-2.3
2,004,171	-		IAI47_09495	0.47	+4.6
2,004,195	+		IAI47_09495	0.49	-0.3
2,004,196	-		IAI47_09495	0.50	-1.2
2,004,196	-		IAI47_09495	0.50	+1.0
2,004,196	-		IAI47_09495	0.50	-0.5
2,004,269	+		IAI47_09495	0.57	-2.4
2,004,269	+		IAI47_09495	0.57	-0.4
2,004,270	-		IAI47_09495	0.57	-0.3
2,004,270	-		IAI47_09495	0.57	+1.0
2,004,270	-		IAI47_09495	0.57	+0.1
2,004,276	+		IAI47_09495	0.58	-0.9
2,004,276	+		IAI47_09495	0.58	+0.7
2,004,277	-		IAI47_09495	0.58	-1.0
2,004,326	+		IAI47_09495	0.63	-1.0
2,004,327	-		IAI47_09495	0.63	-2.4
2,004,340	-		IAI47_09495	0.64	+0.2
2,004,372	+		IAI47_09495	0.67	+1.3
2,004,372	+		IAI47_09495	0.67	+2.2
2,004,372	+		IAI47_09495	0.67	-0.6
2,004,373	-		IAI47_09495	0.67	-2.5
2,004,373	-		IAI47_09495	0.67	-2.4
2,004,398	+		IAI47_09495	0.70	-1.7
2,004,399	-		IAI47_09495	0.70	-0.6
2,004,412	+		IAI47_09495	0.71	-0.9
2,004,413	-		IAI47_09495	0.71	-0.2
2,004,457	-		IAI47_09495	0.76	-1.8
2,004,457	-		IAI47_09495	0.76	-2.0
2,004,457	-		IAI47_09495	0.76	-1.0
2,004,483	+		IAI47_09495	0.78	-0.8
2,004,483	+		IAI47_09495	0.78	+0.9
2,004,485	+		IAI47_09495	0.79	-0.0
2,004,485	+		IAI47_09495	0.79	-1.7
2,004,485	+		IAI47_09495	0.79	+0.4
2,004,486	-		IAI47_09495	0.79	-2.3
2,004,486	-		IAI47_09495	0.79	-0.5
2,004,486	-		IAI47_09495	0.79	-0.0
2,004,486	-		IAI47_09495	0.79	-0.5
2,004,541	+		IAI47_09495	0.84	-0.5
2,004,542	-		IAI47_09495	0.84	+1.8
2,004,598	+				-1.0
2,004,598	+				-1.2
2,004,599	-				-0.8
2,004,599	-				-0.8
2,004,599	-				-2.3
2,004,653	+				+0.5
2,004,653	+				-0.0
2,004,654	-				-1.1
2,004,654	-				-1.2
2,004,654	-				-1.5
2,004,665	+				-1.0
2,004,665	+				-0.5
2,004,666	-				-1.4
2,004,672	+				-0.0
2,004,680	+				-1.3
2,004,681	-				-0.6
2,004,720	-				-1.3
2,004,720	-				-0.9
2,004,720	-				-0.1
2,004,764	-				+0.6
2,004,800	+				-0.5
2,004,800	+				-1.0
2,004,800	+				+0.3
2,004,800	+				-0.5
2,004,800	+				-2.0
2,004,800	+				+2.1
2,004,800	+				+0.3
2,004,801	-				-0.5
2,004,801	-				-1.8
2,004,801	-				+4.5
2,004,801	-				+0.6
2,004,801	-				+1.2
2,004,801	-				-0.5
2,004,824	+				+1.2
2,004,825	-				-1.2
2,004,825	-				+0.3
2,004,829	+				+0.6
2,004,829	+				+1.0
2,004,830	-				+1.0
2,004,830	-				-0.7
2,004,830	-				-0.0
2,004,830	-				+1.9
2,004,842	+				+0.9
2,004,842	+				-0.3
2,004,843	-				+1.0
2,004,851	+				-2.0
2,004,852	-				+1.8
2,004,886	+				+0.5
2,004,887	-				+1.3
2,005,042	-				-1.9
2,005,072	+				+0.4
2,005,073	-				+1.0
2,005,219	+		IAI47_09500	0.14	-1.2
2,005,219	+		IAI47_09500	0.14	+0.5
2,005,220	-		IAI47_09500	0.14	-0.6
2,005,220	-		IAI47_09500	0.14	+0.2
2,005,272	+		IAI47_09500	0.16	+0.5
2,005,273	-		IAI47_09500	0.16	+2.4
2,005,273	-		IAI47_09500	0.16	+1.1
2,005,273	-		IAI47_09500	0.16	+1.5
2,005,273	-		IAI47_09500	0.16	-1.4
2,005,319	+		IAI47_09500	0.18	+0.5
2,005,320	-		IAI47_09500	0.18	-0.8
2,005,320	-		IAI47_09500	0.18	-0.4
2,005,320	-		IAI47_09500	0.18	-0.3
2,005,323	+		IAI47_09500	0.18	+0.5
2,005,323	+		IAI47_09500	0.18	-1.1
2,005,324	-		IAI47_09500	0.18	-1.4
2,005,421	+		IAI47_09500	0.22	-1.6
2,005,421	+		IAI47_09500	0.22	-1.4
2,005,422	-		IAI47_09500	0.22	+0.9
2,005,444	+		IAI47_09500	0.23	-0.3
2,005,445	-		IAI47_09500	0.23	+0.5
2,005,528	+		IAI47_09500	0.26	+2.3
2,005,650	+		IAI47_09500	0.30	-1.5
2,005,651	-		IAI47_09500	0.30	-0.9
2,005,689	-		IAI47_09500	0.32	+0.2