Strain Fitness in Pantoea sp. MT58 around IAI47_07880

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,671,131	-		IAI47_07875	0.29	+0.5
1,671,139	+		IAI47_07875	0.30	-2.1
1,671,139	+		IAI47_07875	0.30	-0.1
1,671,140	-		IAI47_07875	0.30	+0.1
1,671,170	+		IAI47_07875	0.33	+0.8
1,671,170	+		IAI47_07875	0.33	-1.9
1,671,170	+		IAI47_07875	0.33	+1.1
1,671,170	+		IAI47_07875	0.33	+0.3
1,671,171	-		IAI47_07875	0.33	+0.5
1,671,171	-		IAI47_07875	0.33	-1.6
1,671,171	-		IAI47_07875	0.33	+1.0
1,671,271	-		IAI47_07875	0.42	+2.0
1,671,271	-		IAI47_07875	0.42	-0.9
1,671,274	+		IAI47_07875	0.42	+0.2
1,671,274	+		IAI47_07875	0.42	-0.9
1,671,274	+		IAI47_07875	0.42	-1.0
1,671,287	-		IAI47_07875	0.43	+0.9
1,671,287	-		IAI47_07875	0.43	+0.3
1,671,299	+		IAI47_07875	0.44	-2.5
1,671,299	+		IAI47_07875	0.44	+0.8
1,671,300	-		IAI47_07875	0.45	+1.1
1,671,300	-		IAI47_07875	0.45	+2.1
1,671,300	-		IAI47_07875	0.45	+0.5
1,671,300	-		IAI47_07875	0.45	+0.7
1,671,300	-		IAI47_07875	0.45	+0.1
1,671,335	+		IAI47_07875	0.48	-1.0
1,671,335	+		IAI47_07875	0.48	-0.1
1,671,335	+		IAI47_07875	0.48	+0.5
1,671,335	+		IAI47_07875	0.48	-1.5
1,671,336	-		IAI47_07875	0.48	-1.8
1,671,336	-		IAI47_07875	0.48	+2.5
1,671,336	-		IAI47_07875	0.48	+1.4
1,671,336	-		IAI47_07875	0.48	+1.7
1,671,337	+		IAI47_07875	0.48	+2.4
1,671,337	+		IAI47_07875	0.48	-0.8
1,671,337	+		IAI47_07875	0.48	+3.1
1,671,337	+		IAI47_07875	0.48	-0.8
1,671,337	+		IAI47_07875	0.48	+1.1
1,671,337	+		IAI47_07875	0.48	-0.1
1,671,337	+		IAI47_07875	0.48	+0.4
1,671,338	-		IAI47_07875	0.48	-0.5
1,671,338	-		IAI47_07875	0.48	-1.8
1,671,338	-		IAI47_07875	0.48	+1.7
1,671,338	-		IAI47_07875	0.48	-3.0
1,671,338	-		IAI47_07875	0.48	+0.7
1,671,433	+		IAI47_07875	0.57	-0.4
1,671,446	+		IAI47_07875	0.58	+1.4
1,671,446	+		IAI47_07875	0.58	+0.0
1,671,548	+		IAI47_07875	0.67	+0.5
1,671,548	+		IAI47_07875	0.67	-0.1
1,671,548	+		IAI47_07875	0.67	+1.1
1,671,548	+		IAI47_07875	0.67	-0.0
1,671,548	+		IAI47_07875	0.67	-0.6
1,671,549	-		IAI47_07875	0.67	-1.9
1,671,549	-		IAI47_07875	0.67	+0.3
1,671,549	-		IAI47_07875	0.67	-0.3
1,671,550	+		IAI47_07875	0.67	+0.2
1,671,550	+		IAI47_07875	0.67	-0.5
1,671,646	+		IAI47_07875	0.76	+0.1
1,671,646	+		IAI47_07875	0.76	+0.3
1,671,647	-		IAI47_07875	0.76	+1.5
1,671,647	-		IAI47_07875	0.76	+0.1
1,671,647	-		IAI47_07875	0.76	+1.8
1,671,697	+		IAI47_07875	0.80	+1.6
1,671,697	+		IAI47_07875	0.80	+1.5
1,671,697	+		IAI47_07875	0.80	-1.6
1,671,714	+		IAI47_07875	0.82	+1.2
1,671,715	-		IAI47_07875	0.82	-1.5
1,671,757	+		IAI47_07875	0.86	+1.1
1,671,757	+		IAI47_07875	0.86	-1.7
1,671,758	-		IAI47_07875	0.86	+2.2
1,671,758	-		IAI47_07875	0.86	-0.1
1,671,759	+		IAI47_07875	0.86	-0.8
1,671,759	+		IAI47_07875	0.86	-0.4
1,671,759	+		IAI47_07875	0.86	-1.4
1,671,759	+		IAI47_07875	0.86	-0.5
1,671,759	+		IAI47_07875	0.86	+2.9
1,671,759	+		IAI47_07875	0.86	+0.5
1,671,759	+		IAI47_07875	0.86	-1.1
1,671,759	+		IAI47_07875	0.86	+0.5
1,671,759	+		IAI47_07875	0.86	-0.7
1,671,759	+		IAI47_07875	0.86	-0.2
1,671,759	+		IAI47_07875	0.86	+0.9
1,671,759	+		IAI47_07875	0.86	+0.3
1,671,759	+		IAI47_07875	0.86	-0.7
1,671,759	+		IAI47_07875	0.86	-0.7
1,671,759	+		IAI47_07875	0.86	-0.4
1,671,759	+		IAI47_07875	0.86	+1.4
1,671,760	-		IAI47_07875	0.86	-1.5
1,671,760	-		IAI47_07875	0.86	+0.9
1,671,760	-		IAI47_07875	0.86	+0.7
1,671,760	-		IAI47_07875	0.86	+0.8
1,671,760	-		IAI47_07875	0.86	-1.2
1,671,760	-		IAI47_07875	0.86	-0.1
1,671,760	-		IAI47_07875	0.86	-0.8
1,671,760	-		IAI47_07875	0.86	+0.4
1,671,760	-		IAI47_07875	0.86	+1.1
1,671,760	-		IAI47_07875	0.86	+0.8
1,671,760	-		IAI47_07875	0.86	-0.2
1,671,760	-		IAI47_07875	0.86	-0.9
1,671,760	-		IAI47_07875	0.86	-0.5
1,671,760	-		IAI47_07875	0.86	-1.4
1,671,760	-		IAI47_07875	0.86	+0.1
1,671,760	-		IAI47_07875	0.86	+0.5
1,671,760	-		IAI47_07875	0.86	+1.6
1,671,760	-		IAI47_07875	0.86	-0.7
1,671,760	-		IAI47_07875	0.86	-0.3
1,671,760	-		IAI47_07875	0.86	+0.7
1,671,760	-		IAI47_07875	0.86	+0.1
1,671,763	+		IAI47_07875	0.86	+1.2
1,671,763	+		IAI47_07875	0.86	+1.3
1,671,763	+		IAI47_07875	0.86	-0.5
1,671,763	+		IAI47_07875	0.86	-0.2
1,671,763	+		IAI47_07875	0.86	+0.5
1,671,764	-		IAI47_07875	0.86	+0.2
1,671,764	-		IAI47_07875	0.86	+0.2
1,671,824	+				+0.8
1,671,824	+				+1.2
1,671,824	+				+0.2
1,671,824	+				+0.1
1,671,824	+				+0.5
1,671,824	+				+0.4
1,671,824	+				+0.6
1,671,824	+				-1.1
1,671,825	-				-0.1
1,671,825	-				+0.8
1,671,825	-				-0.6
1,671,825	-				+0.5
1,671,825	-				-0.6
1,671,825	-				+1.0
1,671,825	-				-0.4
1,671,825	-				+1.4
1,671,825	-				-0.7
1,671,825	-				+0.1
1,671,826	-				-1.6
1,671,880	+				+1.8
1,671,880	+				-2.2
1,671,907	+				-1.3
1,671,908	-				-0.2
1,671,914	+				-0.3
1,671,914	+				-0.2
1,671,915	-				+2.7
1,671,915	-				-0.3
1,671,915	-				-0.6
1,671,960	+				-1.9
1,671,960	+				+2.0
1,671,960	+				+1.1
1,671,960	+				+2.0
1,671,960	+				+0.6
1,671,960	+				-1.4
1,671,960	+				+1.4
1,671,960	+				-1.0
1,671,960	+				+1.2
1,671,960	+				+1.1
1,671,961	-				-1.3
1,671,961	-				+1.2
1,671,961	-				-0.1
1,671,961	-				+0.7
1,671,961	-				-0.2
1,671,976	+				+0.3
1,671,977	-				-2.1
1,672,023	+				+1.0
1,672,024	-				+0.2
1,672,032	+				-1.8
1,672,032	+				-1.2
1,672,032	+				+0.6
1,672,033	-				+0.1
1,672,033	-				+0.6
1,672,033	-				+0.6
1,672,034	+				+2.0
1,672,034	+				-2.0
1,672,035	-				-1.9
1,672,128	+		IAI47_07880	0.46	-0.0
1,672,128	+		IAI47_07880	0.46	-1.6
1,672,128	+		IAI47_07880	0.46	-0.3
1,672,128	+		IAI47_07880	0.46	+3.3
1,672,128	+		IAI47_07880	0.46	+3.0
1,672,129	-		IAI47_07880	0.46	+0.8
1,672,129	-		IAI47_07880	0.46	+2.7
1,672,129	-		IAI47_07880	0.46	-2.2
1,672,129	-		IAI47_07880	0.46	+0.1
1,672,165	+		IAI47_07880	0.69	-0.4
1,672,165	+		IAI47_07880	0.69	-0.5
1,672,165	+		IAI47_07880	0.69	+0.4
1,672,166	-		IAI47_07880	0.70	-0.5
1,672,166	-		IAI47_07880	0.70	-0.4
1,672,166	-		IAI47_07880	0.70	-1.2
1,672,166	-		IAI47_07880	0.70	-0.4
1,672,177	+		IAI47_07880	0.77	+1.7
1,672,177	+		IAI47_07880	0.77	-0.7
1,672,177	+		IAI47_07880	0.77	+1.7
1,672,177	+		IAI47_07880	0.77	-0.3
1,672,198	+				-0.3
1,672,210	+				-1.6
1,672,210	+				+2.0
1,672,211	-				-0.9
1,672,301	+				+0.4
1,672,301	+				-0.1
1,672,302	-				+0.4
1,672,302	-				-2.6
1,672,302	-				-1.3
1,672,302	-				-1.0
1,672,341	+				-0.2
1,672,342	-				+0.9
1,672,342	-				+0.6
1,672,365	+				+0.7
1,672,366	-				-0.2
1,672,376	+				+0.6
1,672,376	+				+2.0
1,672,376	+				+1.2
1,672,376	+				-1.1
1,672,377	-				-2.1
1,672,391	+				-0.2
1,672,443	-				+0.3
1,672,443	-				-1.3
1,672,443	-				+0.2
1,672,443	-				-1.8
1,672,449	+				+0.1
1,672,459	+				+1.3
1,672,491	+				+1.4
1,672,491	+				-0.8
1,672,491	+				-0.3
1,672,492	-				-1.9
1,672,537	+				+0.1
1,672,541	+				-0.6
1,672,541	+				+0.5
1,672,541	+				+1.1
1,672,541	+				+0.5
1,672,541	+				-1.2
1,672,541	+				-1.1
1,672,542	-				+1.6
1,672,542	-				+0.3
1,672,542	-				-1.6
1,672,542	-				-0.9
1,672,542	-				-0.8
1,672,542	-				-0.2
1,672,556	-				-0.5
1,672,566	+				-1.4
1,672,566	+				+1.3
1,672,567	-				-0.8
1,672,568	+				-0.5
1,672,568	+				+0.6
1,672,569	-				+2.5
1,672,569	-				-0.2
1,672,596	-				+1.1
1,672,609	-				+0.6
1,672,647	-		IAI47_07885	0.43	-0.6
1,672,647	-		IAI47_07885	0.43	+1.2
1,672,712	+				-0.6
1,672,713	-				-1.5
1,672,727	-				-0.2
1,672,747	+				-1.0
1,672,747	+				+0.4
1,672,752	+				+0.5
1,672,752	+				-1.9
1,672,753	-				-2.3
1,672,753	-				+0.0
1,672,753	-				+0.6
1,672,753	-				+1.0
1,672,767	+				-0.6
1,672,768	-				+0.3
1,672,795	-				-0.6
1,672,845	+				+2.5
1,672,846	-				+1.8
1,672,866	+				-0.3
1,672,866	+				+0.8
1,672,866	+				+0.4
1,672,866	+				+2.5
1,672,866	+				-0.1
1,672,866	+				+2.0
1,672,866	+				+0.4
1,672,867	-				+0.2
1,672,867	-				+2.1
1,672,867	-				-0.9
1,672,867	-				+0.6
1,672,867	-				-1.3
1,672,960	-		IAI47_07890	0.22	+0.8
1,672,969	+		IAI47_07890	0.23	+1.4
1,672,970	-		IAI47_07890	0.23	-0.0
1,673,067	-		IAI47_07890	0.35	+2.3
1,673,088	+		IAI47_07890	0.38	+0.8
1,673,113	+		IAI47_07890	0.41	+1.4
1,673,113	+		IAI47_07890	0.41	+2.6
1,673,113	+		IAI47_07890	0.41	-0.0
1,673,114	-		IAI47_07890	0.41	+1.1
1,673,114	-		IAI47_07890	0.41	+1.9
1,673,114	-				-0.2
1,673,114	-		IAI47_07890	0.41	+1.2
1,673,114	-		IAI47_07890	0.41	+2.2
1,673,114	-		IAI47_07890	0.41	+2.8
1,673,190	-		IAI47_07890	0.51	-0.8