Strain Fitness in Pantoea sp. MT58 around IAI47_06790

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,415,843	-		IAI47_06780	0.74	-0.5
1,415,843	-		IAI47_06780	0.74	+0.3
1,415,849	+		IAI47_06780	0.75	+1.6
1,415,849	+		IAI47_06780	0.75	+0.1
1,415,849	+		IAI47_06780	0.75	+0.7
1,415,849	+		IAI47_06780	0.75	+0.6
1,415,849	+		IAI47_06780	0.75	+0.9
1,415,849	+		IAI47_06780	0.75	-1.6
1,415,849	+		IAI47_06780	0.75	-0.8
1,415,849	+		IAI47_06780	0.75	+1.7
1,415,850	-		IAI47_06780	0.75	+2.0
1,415,850	-		IAI47_06780	0.75	+0.7
1,415,931	+		IAI47_06780	0.82	-0.3
1,415,931	+		IAI47_06780	0.82	-0.0
1,415,931	+		IAI47_06780	0.82	+0.6
1,416,032	+				-0.1
1,416,042	+				-1.0
1,416,043	-				-1.0
1,416,078	+				+0.4
1,416,078	+				-0.8
1,416,127	-				+0.9
1,416,127	-				-0.3
1,416,150	+				-2.2
1,416,150	+				+2.2
1,416,150	+				+0.6
1,416,151	-				+0.8
1,416,151	-				+0.5
1,416,168	+				-1.7
1,416,183	+		IAI47_06785	0.13	+3.1
1,416,184	-		IAI47_06785	0.13	-1.2
1,416,237	+		IAI47_06785	0.25	-1.1
1,416,237	+		IAI47_06785	0.25	+1.0
1,416,274	+		IAI47_06785	0.33	-0.4
1,416,274	+		IAI47_06785	0.33	-0.2
1,416,274	+		IAI47_06785	0.33	+0.2
1,416,274	+		IAI47_06785	0.33	+0.5
1,416,274	+		IAI47_06785	0.33	-1.2
1,416,274	+		IAI47_06785	0.33	+0.2
1,416,275	-		IAI47_06785	0.33	+2.6
1,416,275	-		IAI47_06785	0.33	+1.3
1,416,275	-		IAI47_06785	0.33	+1.3
1,416,293	-		IAI47_06785	0.37	-0.3
1,416,306	-		IAI47_06785	0.40	+1.4
1,416,306	-		IAI47_06785	0.40	+0.2
1,416,360	+		IAI47_06785	0.52	+0.2
1,416,360	+		IAI47_06785	0.52	-0.0
1,416,360	+		IAI47_06785	0.52	-0.7
1,416,360	+		IAI47_06785	0.52	-2.1
1,416,361	-		IAI47_06785	0.52	-1.0
1,416,361	-		IAI47_06785	0.52	+0.1
1,416,361	-		IAI47_06785	0.52	+0.0
1,416,361	-		IAI47_06785	0.52	+0.2
1,416,361	-		IAI47_06785	0.52	+0.5
1,416,361	-		IAI47_06785	0.52	+0.8
1,416,455	-		IAI47_06785	0.72	-0.7
1,416,508	+		IAI47_06785	0.84	+1.3
1,416,508	+		IAI47_06785	0.84	+0.0
1,416,509	-		IAI47_06785	0.84	-0.5
1,416,509	-		IAI47_06785	0.84	+1.0
1,416,509	-		IAI47_06785	0.84	-0.1
1,416,509	-		IAI47_06785	0.84	+0.2
1,416,509	-		IAI47_06785	0.84	+0.7
1,416,509	-		IAI47_06785	0.84	+1.0
1,416,509	-		IAI47_06785	0.84	-0.4
1,416,535	+				+1.6
1,416,535	+				-0.2
1,416,536	-				+0.7
1,416,563	-				-1.4
1,416,594	-				-2.5
1,416,594	-				+0.9
1,416,606	+				-0.2
1,416,607	-				+1.3
1,416,607	-				+0.4
1,416,607	-				+0.9
1,416,614	+				+1.4
1,416,614	+				-1.2
1,416,615	-				-0.8
1,416,639	+				-0.8
1,416,639	+				-0.6
1,416,640	-				+1.5
1,416,680	-				-1.9
1,416,689	+				+0.9
1,416,690	-				-1.8
1,416,690	-				+0.8
1,416,745	+				-2.6
1,416,767	+				-1.5
1,416,767	+				-0.5
1,416,767	+				+2.0
1,416,768	-				-1.8
1,416,768	-				+0.3
1,416,770	+				+0.9
1,416,770	+				+1.6
1,416,770	+				+1.9
1,416,770	+				-0.5
1,416,770	+				+0.8
1,416,771	-				-1.7
1,416,789	+				+1.4
1,416,794	-				-2.0
1,416,807	+				+1.3
1,416,807	+				-1.1
1,416,833	+				+1.5
1,416,833	+				-3.0
1,416,834	-				+0.7
1,416,834	-				-0.5
1,416,834	-				+2.4
1,416,836	+				+0.6
1,416,836	+				+0.8
1,416,836	+				+2.2
1,416,836	+				-1.0
1,416,898	+		IAI47_06790	0.12	-1.6
1,416,898	+		IAI47_06790	0.12	+1.9
1,416,920	+		IAI47_06790	0.16	+0.9
1,416,942	+		IAI47_06790	0.20	+0.1
1,416,988	+		IAI47_06790	0.28	+0.2
1,416,999	+		IAI47_06790	0.30	+2.3
1,416,999	+		IAI47_06790	0.30	+0.1
1,417,024	+		IAI47_06790	0.35	+0.2
1,417,024	+		IAI47_06790	0.35	+0.8
1,417,024	+		IAI47_06790	0.35	+0.0
1,417,032	+		IAI47_06790	0.36	+2.0
1,417,032	+		IAI47_06790	0.36	+0.7
1,417,058	+		IAI47_06790	0.41	-0.9
1,417,107	+		IAI47_06790	0.49	-0.3
1,417,107	+		IAI47_06790	0.49	-1.0
1,417,107	+		IAI47_06790	0.49	-0.4
1,417,190	+		IAI47_06790	0.64	+0.8
1,417,190	+		IAI47_06790	0.64	-0.8
1,417,190	+		IAI47_06790	0.64	+1.8
1,417,190	+		IAI47_06790	0.64	+1.0
1,417,216	+		IAI47_06790	0.69	+0.6
1,417,216	+		IAI47_06790	0.69	+2.8
1,417,216	+		IAI47_06790	0.69	-0.4
1,417,296	+		IAI47_06790	0.83	-0.0
1,417,456	+				+0.2
1,417,457	-				+0.2
1,417,457	-				+0.8
1,417,462	+				+0.5
1,417,462	+				-0.3
1,417,462	+				+2.2
1,417,462	+				-0.6
1,417,462	+				-0.5
1,417,462	+				-0.3
1,417,462	+				+1.5
1,417,462	+				-0.1
1,417,462	+				-0.3
1,417,463	-				-0.4
1,417,463	-				-0.7
1,417,463	-				-0.1
1,417,463	-				+0.2
1,417,463	-				-1.0
1,417,463	-				+0.6
1,417,499	+				+1.3
1,417,499	+				+0.4
1,417,500	-				-0.2
1,417,512	+				+0.7
1,417,513	-				-0.9
1,417,588	+				+0.8
1,417,645	+		IAI47_06795	0.12	-1.5
1,417,645	+		IAI47_06795	0.12	+0.5
1,417,646	-		IAI47_06795	0.12	+1.1
1,417,646	-		IAI47_06795	0.12	-1.7
1,417,646	-		IAI47_06795	0.12	+0.4
1,417,746	+		IAI47_06795	0.18	+0.1
1,417,747	-		IAI47_06795	0.18	-1.5
1,417,769	-		IAI47_06795	0.20	-0.1
1,417,769	-		IAI47_06795	0.20	+0.2
1,417,832	+		IAI47_06795	0.24	-1.7
1,417,832	+		IAI47_06795	0.24	+0.6
1,417,833	-		IAI47_06795	0.24	+0.1
1,417,833	-		IAI47_06795	0.24	-0.2
1,417,833	-		IAI47_06795	0.24	-0.2
1,417,833	-		IAI47_06795	0.24	-2.0
1,417,833	-		IAI47_06795	0.24	+0.6
1,417,833	-		IAI47_06795	0.24	-0.9
1,417,835	+		IAI47_06795	0.24	+0.2
1,417,835	+		IAI47_06795	0.24	-0.9
1,417,836	-		IAI47_06795	0.24	+0.2
1,417,852	+		IAI47_06795	0.25	+2.6
1,417,852	+		IAI47_06795	0.25	-1.4
1,417,852	+		IAI47_06795	0.25	-0.6
1,417,852	+		IAI47_06795	0.25	-1.2
1,417,853	-		IAI47_06795	0.25	+0.2
1,417,853	-		IAI47_06795	0.25	-2.3
1,417,853	-		IAI47_06795	0.25	+1.9
1,417,985	+		IAI47_06795	0.33	-2.1
1,417,996	+		IAI47_06795	0.34	-0.4
1,417,996	+		IAI47_06795	0.34	+0.5
1,417,997	-		IAI47_06795	0.34	-1.8
1,418,046	+		IAI47_06795	0.37	+0.5
1,418,046	+		IAI47_06795	0.37	+1.5
1,418,047	-		IAI47_06795	0.37	+0.8
1,418,047	-		IAI47_06795	0.37	-0.3
1,418,047	-		IAI47_06795	0.37	-0.7
1,418,047	-		IAI47_06795	0.37	+1.2
1,418,047	-		IAI47_06795	0.37	-0.7
1,418,047	-		IAI47_06795	0.37	-0.1
1,418,050	+		IAI47_06795	0.37	+0.9
1,418,050	+		IAI47_06795	0.37	-1.4
1,418,050	+		IAI47_06795	0.37	+0.5
1,418,050	+		IAI47_06795	0.37	-1.6
1,418,051	-		IAI47_06795	0.38	-2.2
1,418,051	-		IAI47_06795	0.38	-1.3
1,418,051	-		IAI47_06795	0.38	-2.0
1,418,051	-		IAI47_06795	0.38	-0.2
1,418,062	+		IAI47_06795	0.38	-0.3
1,418,099	+		IAI47_06795	0.41	-0.4
1,418,099	+		IAI47_06795	0.41	-0.5
1,418,100	-		IAI47_06795	0.41	+1.8
1,418,150	+		IAI47_06795	0.44	-1.7
1,418,150	+		IAI47_06795	0.44	+1.9
1,418,150	+		IAI47_06795	0.44	-1.1
1,418,150	+		IAI47_06795	0.44	-1.4
1,418,151	-		IAI47_06795	0.44	-0.2
1,418,151	-		IAI47_06795	0.44	-0.4
1,418,151	-		IAI47_06795	0.44	-1.7
1,418,151	-		IAI47_06795	0.44	+0.3
1,418,151	-		IAI47_06795	0.44	+0.2
1,418,162	-		IAI47_06795	0.45	-1.4
1,418,208	+		IAI47_06795	0.48	-0.7
1,418,209	-		IAI47_06795	0.48	+0.6
1,418,234	+		IAI47_06795	0.49	+2.0
1,418,234	+		IAI47_06795	0.49	-0.5
1,418,235	-		IAI47_06795	0.49	+0.5
1,418,235	-		IAI47_06795	0.49	+0.2
1,418,235	-		IAI47_06795	0.49	-0.4
1,418,300	+		IAI47_06795	0.53	-0.4
1,418,300	+		IAI47_06795	0.53	-0.7
1,418,300	+		IAI47_06795	0.53	-0.5
1,418,300	+		IAI47_06795	0.53	+0.3
1,418,300	+		IAI47_06795	0.53	-0.1
1,418,300	+		IAI47_06795	0.53	+0.2
1,418,300	+		IAI47_06795	0.53	-0.9
1,418,300	+		IAI47_06795	0.53	-1.0
1,418,301	-		IAI47_06795	0.54	+0.8
1,418,335	+		IAI47_06795	0.56	+1.0
1,418,336	-		IAI47_06795	0.56	-0.1