Strain Fitness in Pantoea sp. MT58 around IAI47_06150

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_06145 and IAI47_06150 are separated by 45 nucleotidesIAI47_06150 and IAI47_06155 are separated by 4 nucleotidesIAI47_06155 and IAI47_06160 are separated by 8 nucleotides IAI47_06145: IAI47_06145 - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 1,250,291 to 1,251,223 _06145 IAI47_06150: IAI47_06150 - chorismate synthase, at 1,251,269 to 1,252,354 _06150 IAI47_06155: IAI47_06155 - penicillin-insensitive murein endopeptidase, at 1,252,359 to 1,253,183 _06155 IAI47_06160: IAI47_06160 - TSUP family transporter, at 1,253,192 to 1,253,995 _06160 Position (kb) 1251 1252 1253Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1250.401 kb on + strand, within IAI47_06145at 1250.401 kb on + strand, within IAI47_06145at 1250.464 kb on + strand, within IAI47_06145at 1250.476 kb on + strand, within IAI47_06145at 1250.476 kb on + strand, within IAI47_06145at 1250.476 kb on + strand, within IAI47_06145at 1250.564 kb on + strand, within IAI47_06145at 1250.564 kb on + strand, within IAI47_06145at 1250.564 kb on + strand, within IAI47_06145at 1250.575 kb on + strand, within IAI47_06145at 1250.575 kb on + strand, within IAI47_06145at 1250.575 kb on + strand, within IAI47_06145at 1250.575 kb on + strand, within IAI47_06145at 1250.575 kb on + strand, within IAI47_06145at 1250.695 kb on + strand, within IAI47_06145at 1250.695 kb on + strand, within IAI47_06145at 1250.704 kb on + strand, within IAI47_06145at 1250.704 kb on + strand, within IAI47_06145at 1250.704 kb on + strand, within IAI47_06145at 1250.704 kb on + strand, within IAI47_06145at 1250.705 kb on + strand, within IAI47_06145at 1250.779 kb on + strand, within IAI47_06145at 1250.886 kb on + strand, within IAI47_06145at 1250.886 kb on + strand, within IAI47_06145at 1250.891 kb on + strand, within IAI47_06145at 1250.891 kb on + strand, within IAI47_06145at 1250.918 kb on + strand, within IAI47_06145at 1250.918 kb on + strand, within IAI47_06145at 1250.918 kb on + strand, within IAI47_06145at 1250.918 kb on + strand, within IAI47_06145at 1251.041 kb on + strand, within IAI47_06145at 1251.041 kb on + strand, within IAI47_06145at 1251.041 kb on + strand, within IAI47_06145at 1251.107 kb on + strand, within IAI47_06145at 1251.124 kb on + strand, within IAI47_06145at 1251.212 kb on + strandat 1251.212 kb on + strandat 1251.214 kb on + strandat 1252.330 kb on + strandat 1252.331 kb on - strandat 1252.467 kb on - strand, within IAI47_06155at 1252.467 kb on - strand, within IAI47_06155at 1252.490 kb on + strand, within IAI47_06155at 1252.490 kb on + strand, within IAI47_06155at 1252.490 kb on + strand, within IAI47_06155at 1252.491 kb on - strand, within IAI47_06155at 1252.491 kb on - strand, within IAI47_06155at 1252.491 kb on - strand, within IAI47_06155at 1252.491 kb on - strand, within IAI47_06155at 1252.491 kb on - strand, within IAI47_06155at 1252.491 kb on - strand, within IAI47_06155at 1252.530 kb on + strand, within IAI47_06155at 1252.530 kb on + strand, within IAI47_06155at 1252.530 kb on + strand, within IAI47_06155at 1252.530 kb on + strand, within IAI47_06155at 1252.531 kb on - strand, within IAI47_06155at 1252.531 kb on - strand, within IAI47_06155at 1252.531 kb on - strand, within IAI47_06155at 1252.531 kb on - strand, within IAI47_06155at 1252.561 kb on - strand, within IAI47_06155at 1252.589 kb on + strand, within IAI47_06155at 1252.590 kb on - strand, within IAI47_06155at 1252.616 kb on + strand, within IAI47_06155at 1252.616 kb on + strand, within IAI47_06155at 1252.616 kb on + strand, within IAI47_06155at 1252.617 kb on - strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.714 kb on + strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.715 kb on - strand, within IAI47_06155at 1252.718 kb on + strand, within IAI47_06155at 1252.718 kb on + strand, within IAI47_06155at 1252.718 kb on + strand, within IAI47_06155at 1252.718 kb on + strand, within IAI47_06155at 1252.719 kb on - strand, within IAI47_06155at 1252.719 kb on - strand, within IAI47_06155at 1252.719 kb on - strand, within IAI47_06155at 1252.719 kb on - strand, within IAI47_06155at 1252.719 kb on - strand, within IAI47_06155at 1252.719 kb on - strand, within IAI47_06155at 1252.851 kb on - strand, within IAI47_06155at 1252.931 kb on + strand, within IAI47_06155at 1252.952 kb on + strand, within IAI47_06155at 1252.952 kb on + strand, within IAI47_06155at 1252.953 kb on - strand, within IAI47_06155at 1252.953 kb on - strand, within IAI47_06155at 1252.953 kb on - strand, within IAI47_06155at 1252.985 kb on + strand, within IAI47_06155at 1252.985 kb on + strand, within IAI47_06155at 1252.985 kb on + strand, within IAI47_06155at 1252.985 kb on + strand, within IAI47_06155at 1252.985 kb on + strand, within IAI47_06155at 1252.986 kb on - strand, within IAI47_06155at 1252.986 kb on - strand, within IAI47_06155at 1252.986 kb on - strand, within IAI47_06155at 1252.986 kb on - strand, within IAI47_06155at 1252.986 kb on - strand, within IAI47_06155at 1252.986 kb on - strand, within IAI47_06155at 1253.168 kb on + strandat 1253.176 kb on + strandat 1253.176 kb on + strandat 1253.176 kb on + strandat 1253.177 kb on - strandat 1253.177 kb on - strandat 1253.177 kb on - strandat 1253.181 kb on + strandat 1253.181 kb on + strandat 1253.181 kb on + strandat 1253.261 kb on - strandat 1253.289 kb on + strand, within IAI47_06160at 1253.289 kb on + strand, within IAI47_06160at 1253.289 kb on + strand, within IAI47_06160at 1253.289 kb on + strand, within IAI47_06160at 1253.289 kb on + strand, within IAI47_06160at 1253.290 kb on - strand, within IAI47_06160at 1253.290 kb on - strand, within IAI47_06160at 1253.290 kb on - strand, within IAI47_06160at 1253.293 kb on + strand, within IAI47_06160at 1253.293 kb on + strand, within IAI47_06160at 1253.293 kb on + strand, within IAI47_06160at 1253.293 kb on + strand, within IAI47_06160at 1253.294 kb on - strand, within IAI47_06160at 1253.294 kb on - strand, within IAI47_06160at 1253.294 kb on - strand, within IAI47_06160at 1253.294 kb on - strand, within IAI47_06160at 1253.294 kb on - strand, within IAI47_06160at 1253.294 kb on - strand, within IAI47_06160at 1253.299 kb on - strand, within IAI47_06160at 1253.299 kb on - strand, within IAI47_06160at 1253.351 kb on - strand, within IAI47_06160

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,250,401 + IAI47_06145 0.12 +0.3
1,250,401 + IAI47_06145 0.12 +1.3
1,250,464 + IAI47_06145 0.19 -2.0
1,250,476 + IAI47_06145 0.20 -1.5
1,250,476 + IAI47_06145 0.20 -0.2
1,250,476 + IAI47_06145 0.20 -0.1
1,250,564 + IAI47_06145 0.29 -0.6
1,250,564 + IAI47_06145 0.29 +1.2
1,250,564 + IAI47_06145 0.29 +0.4
1,250,575 + IAI47_06145 0.30 -0.9
1,250,575 + IAI47_06145 0.30 +1.1
1,250,575 + IAI47_06145 0.30 -0.6
1,250,575 + IAI47_06145 0.30 -1.6
1,250,575 + IAI47_06145 0.30 -1.1
1,250,695 + IAI47_06145 0.43 -0.6
1,250,695 + IAI47_06145 0.43 +1.1
1,250,704 + IAI47_06145 0.44 -1.5
1,250,704 + IAI47_06145 0.44 -0.8
1,250,704 + IAI47_06145 0.44 -1.6
1,250,704 + IAI47_06145 0.44 +1.0
1,250,705 + IAI47_06145 0.44 -0.3
1,250,779 + IAI47_06145 0.52 -0.1
1,250,886 + IAI47_06145 0.64 +0.9
1,250,886 + IAI47_06145 0.64 +1.5
1,250,891 + IAI47_06145 0.64 -0.1
1,250,891 + IAI47_06145 0.64 -2.5
1,250,918 + IAI47_06145 0.67 -0.7
1,250,918 + IAI47_06145 0.67 -1.0
1,250,918 + IAI47_06145 0.67 -1.0
1,250,918 + IAI47_06145 0.67 -0.2
1,251,041 + IAI47_06145 0.80 -1.1
1,251,041 + IAI47_06145 0.80 -0.3
1,251,041 + IAI47_06145 0.80 -1.2
1,251,107 + IAI47_06145 0.87 -0.1
1,251,124 + IAI47_06145 0.89 +0.7
1,251,212 + -1.1
1,251,212 + -0.6
1,251,214 + -2.0
1,252,330 + -1.4
1,252,331 - +0.7
1,252,467 - IAI47_06155 0.13 +0.2
1,252,467 - IAI47_06155 0.13 +0.2
1,252,490 + IAI47_06155 0.16 +1.1
1,252,490 + IAI47_06155 0.16 +0.7
1,252,490 + IAI47_06155 0.16 -0.5
1,252,491 - IAI47_06155 0.16 -0.6
1,252,491 - IAI47_06155 0.16 +2.6
1,252,491 - IAI47_06155 0.16 -1.7
1,252,491 - IAI47_06155 0.16 +0.2
1,252,491 - IAI47_06155 0.16 +1.0
1,252,491 - IAI47_06155 0.16 -0.4
1,252,530 + IAI47_06155 0.21 -0.2
1,252,530 + IAI47_06155 0.21 +0.5
1,252,530 + IAI47_06155 0.21 -1.2
1,252,530 + IAI47_06155 0.21 -0.1
1,252,531 - IAI47_06155 0.21 +0.4
1,252,531 - IAI47_06155 0.21 -1.3
1,252,531 - IAI47_06155 0.21 -0.3
1,252,531 - IAI47_06155 0.21 +0.7
1,252,561 - IAI47_06155 0.24 +0.7
1,252,589 + IAI47_06155 0.28 +1.2
1,252,590 - IAI47_06155 0.28 -1.8
1,252,616 + IAI47_06155 0.31 +0.7
1,252,616 + IAI47_06155 0.31 -0.5
1,252,616 + IAI47_06155 0.31 -0.4
1,252,617 - IAI47_06155 0.31 -1.4
1,252,714 + IAI47_06155 0.43 -0.6
1,252,714 + IAI47_06155 0.43 +1.0
1,252,714 + IAI47_06155 0.43 -0.8
1,252,714 + IAI47_06155 0.43 -1.5
1,252,714 + IAI47_06155 0.43 -1.0
1,252,714 + IAI47_06155 0.43 +0.5
1,252,714 + IAI47_06155 0.43 +0.4
1,252,715 - IAI47_06155 0.43 -0.3
1,252,715 - IAI47_06155 0.43 -0.1
1,252,715 - IAI47_06155 0.43 -0.3
1,252,715 - IAI47_06155 0.43 -0.3
1,252,715 - IAI47_06155 0.43 -0.1
1,252,715 - IAI47_06155 0.43 +0.0
1,252,715 - IAI47_06155 0.43 -0.8
1,252,715 - IAI47_06155 0.43 -0.0
1,252,715 - IAI47_06155 0.43 +1.1
1,252,718 + IAI47_06155 0.44 +0.2
1,252,718 + IAI47_06155 0.44 +1.6
1,252,718 + IAI47_06155 0.44 +0.8
1,252,718 + IAI47_06155 0.44 -1.3
1,252,719 - IAI47_06155 0.44 +0.2
1,252,719 - IAI47_06155 0.44 +0.2
1,252,719 - IAI47_06155 0.44 -0.8
1,252,719 - IAI47_06155 0.44 +0.7
1,252,719 - IAI47_06155 0.44 -0.5
1,252,719 - IAI47_06155 0.44 -0.3
1,252,851 - IAI47_06155 0.60 +0.2
1,252,931 + IAI47_06155 0.69 -1.0
1,252,952 + IAI47_06155 0.72 +1.0
1,252,952 + IAI47_06155 0.72 +1.7
1,252,953 - IAI47_06155 0.72 -0.6
1,252,953 - IAI47_06155 0.72 +1.7
1,252,953 - IAI47_06155 0.72 +0.2
1,252,985 + IAI47_06155 0.76 -1.7
1,252,985 + IAI47_06155 0.76 +1.7
1,252,985 + IAI47_06155 0.76 -0.6
1,252,985 + IAI47_06155 0.76 -1.7
1,252,985 + IAI47_06155 0.76 -0.2
1,252,986 - IAI47_06155 0.76 +0.9
1,252,986 - IAI47_06155 0.76 +3.2
1,252,986 - IAI47_06155 0.76 +0.6
1,252,986 - IAI47_06155 0.76 +2.6
1,252,986 - IAI47_06155 0.76 +1.0
1,252,986 - IAI47_06155 0.76 -0.2
1,253,168 + -2.2
1,253,176 + +1.2
1,253,176 + -1.3
1,253,176 + -0.8
1,253,177 - +0.6
1,253,177 - -0.6
1,253,177 - +1.0
1,253,181 + -1.0
1,253,181 + +0.1
1,253,181 + +1.7
1,253,261 - +0.2
1,253,289 + IAI47_06160 0.12 -0.4
1,253,289 + IAI47_06160 0.12 +3.7
1,253,289 + IAI47_06160 0.12 +0.6
1,253,289 + IAI47_06160 0.12 -0.3
1,253,289 + IAI47_06160 0.12 -0.5
1,253,290 - IAI47_06160 0.12 +1.1
1,253,290 - IAI47_06160 0.12 +1.3
1,253,290 - IAI47_06160 0.12 -1.9
1,253,293 + IAI47_06160 0.13 +1.0
1,253,293 + IAI47_06160 0.13 -2.1
1,253,293 + IAI47_06160 0.13 -2.0
1,253,293 + IAI47_06160 0.13 +2.0
1,253,294 - IAI47_06160 0.13 +1.1
1,253,294 - IAI47_06160 0.13 +1.3
1,253,294 - IAI47_06160 0.13 -1.5
1,253,294 - IAI47_06160 0.13 +0.2
1,253,294 - IAI47_06160 0.13 -0.7
1,253,294 - IAI47_06160 0.13 -1.2
1,253,299 - IAI47_06160 0.13 -0.8
1,253,299 - IAI47_06160 0.13 +0.5
1,253,351 - IAI47_06160 0.20 -1.0

Or see this region's nucleotide sequence