Strain Fitness in Pantoea sp. MT58 around IAI47_06115

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,242,389	+		IAI47_06110	0.17	-2.6
1,242,395	+		IAI47_06110	0.18	+0.4
1,242,395	+		IAI47_06110	0.18	+1.5
1,242,395	+		IAI47_06110	0.18	-1.8
1,242,396	-		IAI47_06110	0.18	-0.4
1,242,399	+		IAI47_06110	0.18	+0.8
1,242,399	+		IAI47_06110	0.18	+0.3
1,242,399	+		IAI47_06110	0.18	+0.7
1,242,399	+		IAI47_06110	0.18	-0.8
1,242,399	+		IAI47_06110	0.18	+0.9
1,242,400	-		IAI47_06110	0.18	-1.6
1,242,400	-		IAI47_06110	0.18	-0.1
1,242,417	+		IAI47_06110	0.20	-0.1
1,242,417	+		IAI47_06110	0.20	-1.2
1,242,417	+		IAI47_06110	0.20	-2.3
1,242,417	+		IAI47_06110	0.20	-1.5
1,242,417	+		IAI47_06110	0.20	+2.3
1,242,418	-		IAI47_06110	0.21	-0.3
1,242,418	-		IAI47_06110	0.21	+0.9
1,242,418	-		IAI47_06110	0.21	-0.4
1,242,418	-		IAI47_06110	0.21	+0.5
1,242,424	+		IAI47_06110	0.21	-2.0
1,242,424	+		IAI47_06110	0.21	+0.0
1,242,424	+		IAI47_06110	0.21	+0.2
1,242,424	+		IAI47_06110	0.21	-1.2
1,242,424	+		IAI47_06110	0.21	+0.4
1,242,425	-		IAI47_06110	0.21	+0.9
1,242,425	-		IAI47_06110	0.21	-0.4
1,242,425	-		IAI47_06110	0.21	-2.5
1,242,425	-		IAI47_06110	0.21	-0.1
1,242,453	+		IAI47_06110	0.25	+0.3
1,242,453	+		IAI47_06110	0.25	+2.8
1,242,454	-		IAI47_06110	0.25	+1.1
1,242,454	-		IAI47_06110	0.25	+0.9
1,242,454	-		IAI47_06110	0.25	-0.4
1,242,454	-		IAI47_06110	0.25	+0.8
1,242,454	-		IAI47_06110	0.25	+2.4
1,242,473	+		IAI47_06110	0.28	-0.1
1,242,473	+		IAI47_06110	0.28	-2.5
1,242,474	-		IAI47_06110	0.28	+2.0
1,242,560	+		IAI47_06110	0.39	-1.5
1,242,561	-		IAI47_06110	0.39	-0.3
1,242,627	-		IAI47_06110	0.48	+0.9
1,242,672	-		IAI47_06110	0.54	-1.1
1,242,674	+		IAI47_06110	0.54	-0.7
1,242,674	+		IAI47_06110	0.54	-0.5
1,242,674	+		IAI47_06110	0.54	+0.4
1,242,674	+		IAI47_06110	0.54	-0.7
1,242,675	-		IAI47_06110	0.54	+1.6
1,242,675	-		IAI47_06110	0.54	-1.3
1,242,675	-		IAI47_06110	0.54	-0.2
1,242,675	-		IAI47_06110	0.54	+1.4
1,242,675	-		IAI47_06110	0.54	-1.0
1,242,688	-		IAI47_06110	0.56	+0.6
1,242,699	+		IAI47_06110	0.57	+2.1
1,242,700	-		IAI47_06110	0.57	-1.7
1,242,708	+		IAI47_06110	0.58	-0.3
1,242,708	+		IAI47_06110	0.58	-0.6
1,242,708	+		IAI47_06110	0.58	+0.3
1,242,708	+		IAI47_06110	0.58	+0.0
1,242,708	+		IAI47_06110	0.58	-1.4
1,242,708	+		IAI47_06110	0.58	-0.2
1,242,708	+		IAI47_06110	0.58	+1.1
1,242,708	+		IAI47_06110	0.58	-0.5
1,242,708	+		IAI47_06110	0.58	-0.6
1,242,708	+		IAI47_06110	0.58	-1.4
1,242,709	-		IAI47_06110	0.59	-0.7
1,242,709	-		IAI47_06110	0.59	+1.2
1,242,709	-		IAI47_06110	0.59	+0.1
1,242,709	-		IAI47_06110	0.59	-1.8
1,242,709	-		IAI47_06110	0.59	+0.2
1,242,709	-		IAI47_06110	0.59	-0.3
1,242,709	-		IAI47_06110	0.59	+0.2
1,242,726	+		IAI47_06110	0.61	-0.2
1,242,727	-		IAI47_06110	0.61	-0.9
1,242,727	-		IAI47_06110	0.61	-0.6
1,242,737	+		IAI47_06110	0.62	+0.2
1,242,762	+		IAI47_06110	0.65	+0.4
1,242,762	+		IAI47_06110	0.65	-1.2
1,242,763	-		IAI47_06110	0.66	+0.9
1,242,763	-		IAI47_06110	0.66	-0.3
1,242,770	+		IAI47_06110	0.67	-0.7
1,242,778	-		IAI47_06110	0.68	+1.9
1,242,818	+		IAI47_06110	0.73	-1.7
1,242,897	+		IAI47_06110	0.83	+2.2
1,242,898	-		IAI47_06110	0.83	+0.2
1,242,898	-		IAI47_06110	0.83	+0.0
1,242,898	-		IAI47_06110	0.83	+1.8
1,242,898	-		IAI47_06110	0.83	+1.9
1,242,905	+		IAI47_06110	0.84	+0.5
1,242,911	+		IAI47_06110	0.85	+2.1
1,242,919	-		IAI47_06110	0.86	-1.0
1,242,932	+		IAI47_06110	0.88	+0.0
1,242,977	+				+0.9
1,243,011	-				+0.2
1,243,023	+				-0.6
1,243,024	-				-0.6
1,243,097	+				-2.0
1,243,097	+				+2.0
1,243,097	+				-1.4
1,243,098	-				-2.1
1,243,098	-				-0.1
1,243,098	-				+0.7
1,243,150	+				+0.0
1,243,150	+				+0.1
1,243,204	+				-0.1
1,243,204	+				-0.8
1,243,229	+				+3.3
1,243,230	-				+0.7
1,243,230	-				+0.6
1,243,230	-				-0.8
1,243,336	+				+0.8
1,243,336	+				+0.3
1,243,336	+				-1.6
1,243,337	-				-0.4
1,243,337	-				+1.1
1,243,337	-				-0.6
1,243,337	-				+1.4
1,243,353	+				-0.3
1,243,353	+				+0.3
1,243,353	+				+0.0
1,243,353	+				+1.3
1,243,353	+				+1.7
1,243,353	+				+0.7
1,243,353	+				-0.3
1,243,354	-				+4.1
1,243,354	-				+0.7
1,243,357	+				-1.6
1,243,357	+				-1.0
1,243,357	+				+0.5
1,243,358	-				+0.3
1,243,384	+				+0.5
1,243,384	+				-0.1
1,243,385	-				+1.0
1,243,385	-				-2.2
1,243,385	-				-1.0
1,243,385	-				+2.3
1,243,396	+				-0.8
1,243,396	+				-0.1
1,243,397	-				-0.4
1,243,397	-				+3.9
1,243,397	-				-0.4
1,243,402	+				-0.4
1,243,402	+				+1.3
1,243,402	+				-1.2
1,243,402	+				-1.1
1,243,402	+				-0.0
1,243,402	+				+1.4
1,243,402	+				+2.7
1,243,402	+				+0.3
1,243,403	-				+1.2
1,243,403	-				+1.4
1,243,403	-				+1.9
1,243,403	-				-0.6
1,243,403	-				+0.9
1,243,404	+				-0.8
1,243,404	+				+1.2
1,243,404	+				+1.5
1,243,405	+				+0.4
1,243,405	-				-1.6
1,243,405	-				-1.9
1,243,405	-				+2.0
1,243,405	-				+2.1
1,243,405	-				+0.5
1,243,405	-				-0.1
1,243,405	-				+1.0
1,243,405	-				+1.3
1,243,441	+				+0.1
1,243,441	+				-0.7
1,243,442	-				+1.7
1,243,442	-				+0.2
1,243,442	-				+0.4
1,243,442	-				+1.7
1,243,443	+				+0.4
1,243,443	+				+2.3
1,243,443	+				+0.3
1,243,443	+				+2.3
1,243,443	+				-1.8
1,243,444	-				+0.7
1,243,444	-				-0.7
1,243,444	-				+0.7
1,243,444	-				-1.0
1,243,444	-				+0.7
1,243,444	-				+2.3
1,243,444	-				+2.8
1,243,444	-				-0.7
1,243,444	-				+1.3
1,243,444	-				-1.2
1,243,444	-				-0.2
1,243,454	+				+2.9
1,243,454	+				+1.3
1,243,454	+				+0.5
1,243,454	+				+1.7
1,243,454	+				+0.4
1,243,454	+				+1.2
1,243,455	-				+0.7
1,243,471	+				-1.3
1,243,472	-		IAI47_06115	0.10	+0.5
1,243,478	-		IAI47_06115	0.11	+1.2
1,243,478	-		IAI47_06115	0.11	+0.2
1,243,485	+		IAI47_06115	0.11	+1.4
1,243,485	+		IAI47_06115	0.11	+0.4
1,243,485	+		IAI47_06115	0.11	+3.3
1,243,485	+		IAI47_06115	0.11	+0.8
1,243,485	+		IAI47_06115	0.11	+0.7
1,243,485	+		IAI47_06115	0.11	+0.9
1,243,486	-		IAI47_06115	0.11	+0.7
1,243,486	-		IAI47_06115	0.11	-1.2
1,243,486	-		IAI47_06115	0.11	+0.0
1,243,486	-		IAI47_06115	0.11	-0.1
1,243,503	-		IAI47_06115	0.12	+0.6
1,243,528	+		IAI47_06115	0.14	-0.3
1,243,528	+		IAI47_06115	0.14	+0.3
1,243,529	-		IAI47_06115	0.14	+3.7
1,243,534	+		IAI47_06115	0.15	+0.4
1,243,534	+		IAI47_06115	0.15	+1.0
1,243,534	+		IAI47_06115	0.15	+0.5
1,243,534	+		IAI47_06115	0.15	+1.7
1,243,534	+		IAI47_06115	0.15	-1.3
1,243,534	+		IAI47_06115	0.15	-1.6
1,243,534	+		IAI47_06115	0.15	+0.7
1,243,534	+		IAI47_06115	0.15	+1.2
1,243,535	-		IAI47_06115	0.15	+1.3
1,243,535	-		IAI47_06115	0.15	+1.2
1,243,535	-		IAI47_06115	0.15	+0.2
1,243,535	-		IAI47_06115	0.15	-0.5
1,243,535	-		IAI47_06115	0.15	+1.7
1,243,535	-		IAI47_06115	0.15	-1.8
1,243,535	-		IAI47_06115	0.15	+1.0
1,243,535	-		IAI47_06115	0.15	+1.7
1,243,576	+		IAI47_06115	0.18	+1.3
1,243,577	-		IAI47_06115	0.18	+0.7
1,243,605	+		IAI47_06115	0.20	+0.0
1,243,606	-		IAI47_06115	0.20	+0.2
1,243,611	+		IAI47_06115	0.21	+2.2
1,243,611	+		IAI47_06115	0.21	+0.7
1,243,611	+		IAI47_06115	0.21	+1.1
1,243,612	-		IAI47_06115	0.21	+2.7
1,243,612	-		IAI47_06115	0.21	+0.2
1,243,612	-		IAI47_06115	0.21	+1.6
1,243,660	+		IAI47_06115	0.25	+0.9
1,243,660	+		IAI47_06115	0.25	+1.5
1,243,662	+		IAI47_06115	0.25	-0.3
1,243,662	+		IAI47_06115	0.25	+1.5
1,243,662	+		IAI47_06115	0.25	+0.4
1,243,662	+		IAI47_06115	0.25	-1.3
1,243,662	+		IAI47_06115	0.25	+2.3
1,243,662	+		IAI47_06115	0.25	-0.6
1,243,662	+		IAI47_06115	0.25	+1.8
1,243,662	+		IAI47_06115	0.25	+1.0
1,243,662	+		IAI47_06115	0.25	-1.4
1,243,662	+		IAI47_06115	0.25	+0.7
1,243,662	+		IAI47_06115	0.25	+0.4
1,243,662	+		IAI47_06115	0.25	-0.1
1,243,663	-		IAI47_06115	0.25	-0.4
1,243,663	-		IAI47_06115	0.25	+2.4
1,243,725	+		IAI47_06115	0.30	-1.3
1,243,726	-		IAI47_06115	0.30	+1.2
1,243,737	+		IAI47_06115	0.31	-0.1
1,243,738	-		IAI47_06115	0.31	-0.3
1,243,738	-		IAI47_06115	0.31	+1.3
1,243,765	+		IAI47_06115	0.33	+2.3
1,243,766	-		IAI47_06115	0.33	+0.5
1,243,766	-		IAI47_06115	0.33	+0.7
1,243,809	-		IAI47_06115	0.36	-1.2
1,243,809	-		IAI47_06115	0.36	+0.7
1,243,870	+		IAI47_06115	0.41	-0.2
1,243,871	-		IAI47_06115	0.41	-0.1
1,243,903	+		IAI47_06115	0.44	-0.4
1,243,903	+		IAI47_06115	0.44	+1.4
1,243,903	+		IAI47_06115	0.44	+1.0
1,243,903	+		IAI47_06115	0.44	+0.2
1,243,903	+		IAI47_06115	0.44	+2.5
1,243,903	+		IAI47_06115	0.44	-1.4
1,243,904	-		IAI47_06115	0.44	+0.5
1,243,904	-		IAI47_06115	0.44	+0.2
1,243,904	-		IAI47_06115	0.44	-0.4
1,243,905	+		IAI47_06115	0.44	+0.9
1,243,906	-		IAI47_06115	0.44	-0.3
1,243,906	-		IAI47_06115	0.44	-0.4
1,243,906	-		IAI47_06115	0.44	+0.7
1,243,906	-		IAI47_06115	0.44	-0.6
1,243,927	+		IAI47_06115	0.45	+0.6
1,243,928	-		IAI47_06115	0.46	+1.6
1,243,941	+		IAI47_06115	0.47	+0.0
1,243,942	-		IAI47_06115	0.47	+0.5
1,243,942	-		IAI47_06115	0.47	+0.6
1,243,942	-		IAI47_06115	0.47	+1.2
1,243,945	+		IAI47_06115	0.47	+0.6
1,243,945	+		IAI47_06115	0.47	+0.7
1,243,945	+		IAI47_06115	0.47	-0.6
1,243,946	-		IAI47_06115	0.47	+1.8
1,243,946	-		IAI47_06115	0.47	+0.3
1,243,946	-		IAI47_06115	0.47	-0.6
1,243,946	-		IAI47_06115	0.47	+2.2
1,243,977	+		IAI47_06115	0.49	-0.0
1,243,977	+		IAI47_06115	0.49	-0.4
1,243,977	+		IAI47_06115	0.49	+0.9
1,243,978	-		IAI47_06115	0.49	+0.8
1,243,978	-		IAI47_06115	0.49	+1.2
1,243,978	-		IAI47_06115	0.49	+0.7
1,243,978	-		IAI47_06115	0.49	+0.7
1,243,978	-		IAI47_06115	0.49	+0.2
1,243,978	-		IAI47_06115	0.49	+0.8
1,244,012	-		IAI47_06115	0.52	-0.6
1,244,050	+		IAI47_06115	0.55	+0.3
1,244,079	+		IAI47_06115	0.57	+0.2
1,244,079	+		IAI47_06115	0.57	-0.8
1,244,080	-		IAI47_06115	0.57	+0.9
1,244,080	-		IAI47_06115	0.57	+1.8
1,244,131	+		IAI47_06115	0.61	+1.2
1,244,131	+		IAI47_06115	0.61	-2.2
1,244,131	+		IAI47_06115	0.61	+1.0
1,244,132	-		IAI47_06115	0.61	-0.9
1,244,151	+		IAI47_06115	0.63	-0.9
1,244,195	-		IAI47_06115	0.66	+0.8
1,244,195	-		IAI47_06115	0.66	-1.3
1,244,203	-		IAI47_06115	0.67	-1.0
1,244,217	+		IAI47_06115	0.68	+0.4
1,244,217	+		IAI47_06115	0.68	+3.7
1,244,218	-		IAI47_06115	0.68	+0.8
1,244,218	-		IAI47_06115	0.68	+0.7
1,244,225	-		IAI47_06115	0.69	-1.6
1,244,225	-		IAI47_06115	0.69	-0.0
1,244,227	+		IAI47_06115	0.69	-0.8
1,244,227	+		IAI47_06115	0.69	+1.0
1,244,227	+		IAI47_06115	0.69	+1.1
1,244,228	-		IAI47_06115	0.69	+0.4
1,244,228	-		IAI47_06115	0.69	-1.4
1,244,228	-		IAI47_06115	0.69	-0.6
1,244,228	-		IAI47_06115	0.69	-0.4
1,244,247	+		IAI47_06115	0.70	+0.8
1,244,288	-		IAI47_06115	0.74	-0.1
1,244,288	-		IAI47_06115	0.74	-0.5
1,244,290	+		IAI47_06115	0.74	+0.8
1,244,290	+		IAI47_06115	0.74	+2.4
1,244,290	+		IAI47_06115	0.74	+1.5
1,244,291	-		IAI47_06115	0.74	-1.0
1,244,291	-		IAI47_06115	0.74	+1.2
1,244,301	+		IAI47_06115	0.75	+0.4
1,244,302	-		IAI47_06115	0.75	+0.4
1,244,308	+		IAI47_06115	0.75	+0.6
1,244,309	-		IAI47_06115	0.75	-0.7
1,244,309	-		IAI47_06115	0.75	-0.4
1,244,335	+		IAI47_06115	0.77	-1.6
1,244,335	+		IAI47_06115	0.77	-0.8
1,244,335	+		IAI47_06115	0.77	+0.2
1,244,336	-		IAI47_06115	0.77	+1.5
1,244,336	-		IAI47_06115	0.77	+1.2
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