Strain Fitness in Pantoea sp. MT58 around IAI47_06090

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,237,117	-		IAI47_06075	0.85	-1.3
1,237,131	-		IAI47_06075	0.87	-1.0
1,237,131	-		IAI47_06075	0.87	+0.7
1,237,131	-		IAI47_06075	0.87	+1.0
1,237,131	-		IAI47_06075	0.87	+2.5
1,237,157	+				-0.7
1,237,274	+		IAI47_06080	0.21	-1.3
1,237,283	+		IAI47_06080	0.24	+1.0
1,237,283	+		IAI47_06080	0.24	+0.7
1,237,283	+		IAI47_06080	0.24	+0.4
1,237,283	+		IAI47_06080	0.24	+0.5
1,237,284	-		IAI47_06080	0.25	+0.3
1,237,284	-		IAI47_06080	0.25	-2.2
1,237,339	+		IAI47_06080	0.48	+1.4
1,237,339	+		IAI47_06080	0.48	+2.1
1,237,339	+		IAI47_06080	0.48	-0.0
1,237,348	-		IAI47_06080	0.52	+0.5
1,237,483	+				+0.0
1,237,537	+		IAI47_06085	0.17	+0.4
1,237,537	+		IAI47_06085	0.17	-0.1
1,237,537	+		IAI47_06085	0.17	+1.6
1,237,537	+		IAI47_06085	0.17	+0.3
1,237,537	+		IAI47_06085	0.17	+1.0
1,237,537	+		IAI47_06085	0.17	+0.7
1,237,538	-		IAI47_06085	0.17	-0.3
1,237,538	-		IAI47_06085	0.17	+0.3
1,237,538	-		IAI47_06085	0.17	+1.2
1,237,538	-		IAI47_06085	0.17	+0.2
1,237,538	-		IAI47_06085	0.17	+1.9
1,237,567	+		IAI47_06085	0.23	-0.3
1,237,567	+		IAI47_06085	0.23	-0.0
1,237,567	+		IAI47_06085	0.23	-1.6
1,237,567	+		IAI47_06085	0.23	+0.5
1,237,567	+		IAI47_06085	0.23	+0.9
1,237,567	+		IAI47_06085	0.23	+0.8
1,237,567	+		IAI47_06085	0.23	+1.0
1,237,567	+		IAI47_06085	0.23	+1.0
1,237,567	+		IAI47_06085	0.23	+0.6
1,237,568	-		IAI47_06085	0.23	-1.2
1,237,568	-		IAI47_06085	0.23	+1.6
1,237,568	-		IAI47_06085	0.23	-0.9
1,237,570	-		IAI47_06085	0.23	+1.0
1,237,570	-		IAI47_06085	0.23	+0.7
1,237,589	-		IAI47_06085	0.27	+1.0
1,237,708	+		IAI47_06085	0.52	+0.4
1,237,708	+		IAI47_06085	0.52	+1.2
1,237,708	+		IAI47_06085	0.52	+2.7
1,237,709	-		IAI47_06085	0.52	+0.9
1,237,709	-		IAI47_06085	0.52	-1.4
1,237,709	-		IAI47_06085	0.52	-0.6
1,237,856	-		IAI47_06085	0.82	-0.6
1,237,856	-		IAI47_06085	0.82	+1.3
1,237,856	-		IAI47_06085	0.82	+0.8
1,237,856	-		IAI47_06085	0.82	-0.3
1,237,856	-		IAI47_06085	0.82	+0.1
1,237,857	+		IAI47_06085	0.83	+2.4
1,237,857	+		IAI47_06085	0.83	-1.3
1,237,857	+		IAI47_06085	0.83	+0.2
1,237,858	-		IAI47_06085	0.83	+0.3
1,237,858	-		IAI47_06085	0.83	+0.8
1,237,915	+				+1.7
1,237,916	-				+1.0
1,237,929	+				+0.4
1,237,929	+				+1.2
1,237,930	-				-0.6
1,238,004	+				-0.1
1,238,004	+				-0.4
1,238,004	+				-0.1
1,238,004	+				+1.5
1,238,084	+				+1.1
1,238,085	-				-0.8
1,238,085	-				+2.0
1,238,120	+				-0.4
1,238,120	+				+0.6
1,238,121	-				+1.0
1,238,135	+		IAI47_06090	0.10	+0.4
1,238,135	+		IAI47_06090	0.10	+1.1
1,238,136	-		IAI47_06090	0.10	-1.0
1,238,136	-		IAI47_06090	0.10	+2.1
1,238,145	+		IAI47_06090	0.11	-0.0
1,238,145	+		IAI47_06090	0.11	+0.4
1,238,145	+		IAI47_06090	0.11	+1.4
1,238,145	+		IAI47_06090	0.11	+1.2
1,238,145	+		IAI47_06090	0.11	+0.5
1,238,146	-		IAI47_06090	0.11	+1.4
1,238,146	-		IAI47_06090	0.11	+0.7
1,238,146	-		IAI47_06090	0.11	-0.7
1,238,146	-		IAI47_06090	0.11	+1.2
1,238,146	-		IAI47_06090	0.11	-0.3
1,238,162	+		IAI47_06090	0.11	+0.6
1,238,162	+		IAI47_06090	0.11	+1.6
1,238,163	-		IAI47_06090	0.11	-0.1
1,238,163	-		IAI47_06090	0.11	-0.3
1,238,163	-		IAI47_06090	0.11	-0.7
1,238,181	+		IAI47_06090	0.12	+3.2
1,238,182	-		IAI47_06090	0.12	-0.1
1,238,182	-		IAI47_06090	0.12	+1.6
1,238,273	-		IAI47_06090	0.17	+0.4
1,238,286	-		IAI47_06090	0.18	+1.9
1,238,355	-		IAI47_06090	0.21	+1.4
1,238,404	+		IAI47_06090	0.24	+0.3
1,238,469	+		IAI47_06090	0.27	+1.2
1,238,469	+		IAI47_06090	0.27	+1.0
1,238,469	+		IAI47_06090	0.27	+0.8
1,238,469	+		IAI47_06090	0.27	+2.3
1,238,469	+		IAI47_06090	0.27	-0.2
1,238,469	+		IAI47_06090	0.27	+1.0
1,238,469	+		IAI47_06090	0.27	+2.0
1,238,469	+		IAI47_06090	0.27	-0.3
1,238,469	+		IAI47_06090	0.27	+1.1
1,238,469	+		IAI47_06090	0.27	-0.2
1,238,470	-		IAI47_06090	0.27	-0.8
1,238,470	-		IAI47_06090	0.27	+1.2
1,238,470	-		IAI47_06090	0.27	+1.0
1,238,470	-		IAI47_06090	0.27	-0.2
1,238,470	-		IAI47_06090	0.27	+1.0
1,238,470	-		IAI47_06090	0.27	+1.6
1,238,470	-		IAI47_06090	0.27	+0.1
1,238,470	-		IAI47_06090	0.27	+1.2
1,238,470	-		IAI47_06090	0.27	+2.9
1,238,470	-		IAI47_06090	0.27	+0.6
1,238,470	-		IAI47_06090	0.27	+1.9
1,238,471	+		IAI47_06090	0.27	-0.8
1,238,471	+		IAI47_06090	0.27	-1.3
1,238,472	-		IAI47_06090	0.27	+0.2
1,238,472	-		IAI47_06090	0.27	-1.8
1,238,472	-		IAI47_06090	0.27	+0.7
1,238,472	-		IAI47_06090	0.27	-0.1
1,238,478	+		IAI47_06090	0.28	+0.0
1,238,478	+		IAI47_06090	0.28	-0.3
1,238,478	+		IAI47_06090	0.28	+1.0
1,238,478	+		IAI47_06090	0.28	+0.2
1,238,479	-		IAI47_06090	0.28	+1.4
1,238,479	-		IAI47_06090	0.28	-0.8
1,238,479	-		IAI47_06090	0.28	-0.1
1,238,479	-		IAI47_06090	0.28	+1.2
1,238,479	-		IAI47_06090	0.28	-2.6
1,238,479	-		IAI47_06090	0.28	+3.7
1,238,540	+		IAI47_06090	0.31	+0.5
1,238,629	-		IAI47_06090	0.35	-1.9
1,238,629	-		IAI47_06090	0.35	-0.2
1,238,629	-		IAI47_06090	0.35	-0.8
1,238,629	-		IAI47_06090	0.35	+0.5
1,238,631	+		IAI47_06090	0.35	+2.3
1,238,632	-		IAI47_06090	0.35	+1.5
1,238,632	-		IAI47_06090	0.35	-0.3
1,238,632	-		IAI47_06090	0.35	-0.1
1,238,688	-		IAI47_06090	0.38	-0.4
1,238,688	-		IAI47_06090	0.38	+0.9
1,238,781	-		IAI47_06090	0.43	+1.7
1,238,879	+		IAI47_06090	0.48	+0.7
1,238,880	-		IAI47_06090	0.48	+0.4
1,238,925	+		IAI47_06090	0.50	+0.9
1,238,925	+		IAI47_06090	0.50	+2.3
1,238,925	+		IAI47_06090	0.50	-0.6
1,238,925	+		IAI47_06090	0.50	+1.2
1,238,925	+		IAI47_06090	0.50	+1.0
1,238,925	+		IAI47_06090	0.50	-1.1
1,238,925	+		IAI47_06090	0.50	+0.7
1,238,925	+		IAI47_06090	0.50	+1.6
1,238,926	-		IAI47_06090	0.50	+1.2
1,238,926	-		IAI47_06090	0.50	+1.2
1,238,926	-		IAI47_06090	0.50	+0.6
1,239,002	+		IAI47_06090	0.54	+1.4
1,239,002	+		IAI47_06090	0.54	+0.7
1,239,002	+		IAI47_06090	0.54	+1.9
1,239,002	+		IAI47_06090	0.54	+1.4
1,239,002	+		IAI47_06090	0.54	+2.2
1,239,003	-		IAI47_06090	0.54	-0.1
1,239,003	-		IAI47_06090	0.54	+0.2
1,239,061	+		IAI47_06090	0.57	-0.4
1,239,061	+		IAI47_06090	0.57	+2.3
1,239,062	-		IAI47_06090	0.57	+1.4
1,239,062	-		IAI47_06090	0.57	+1.1
1,239,062	-		IAI47_06090	0.57	+0.7
1,239,062	-		IAI47_06090	0.57	-1.8
1,239,065	+		IAI47_06090	0.58	-1.0
1,239,065	+		IAI47_06090	0.58	-1.4
1,239,065	+		IAI47_06090	0.58	+0.9
1,239,065	+		IAI47_06090	0.58	+0.9
1,239,065	+		IAI47_06090	0.58	+0.9
1,239,065	+		IAI47_06090	0.58	+0.4
1,239,065	+		IAI47_06090	0.58	+0.3
1,239,065	+		IAI47_06090	0.58	+1.6
1,239,065	+		IAI47_06090	0.58	+0.8
1,239,065	+		IAI47_06090	0.58	+1.4
1,239,065	+		IAI47_06090	0.58	+0.2
1,239,065	+		IAI47_06090	0.58	+1.0
1,239,065	+		IAI47_06090	0.58	+1.3
1,239,066	-		IAI47_06090	0.58	-0.1
1,239,066	-		IAI47_06090	0.58	+1.4
1,239,066	-		IAI47_06090	0.58	-0.9
1,239,066	-		IAI47_06090	0.58	-0.2
1,239,066	-		IAI47_06090	0.58	-0.7
1,239,066	-		IAI47_06090	0.58	+0.1
1,239,066	-		IAI47_06090	0.58	-0.2
1,239,066	-		IAI47_06090	0.58	-0.1
1,239,066	-		IAI47_06090	0.58	+0.2
1,239,148	+		IAI47_06090	0.62	+0.8
1,239,149	-		IAI47_06090	0.62	-1.0
1,239,323	+		IAI47_06090	0.71	+1.7
1,239,323	+		IAI47_06090	0.71	-1.6
1,239,323	+		IAI47_06090	0.71	+1.4
1,239,323	+		IAI47_06090	0.71	+0.9
1,239,324	-		IAI47_06090	0.71	+0.1
1,239,324	-		IAI47_06090	0.71	+0.6
1,239,324	-		IAI47_06090	0.71	+0.2
1,239,328	+		IAI47_06090	0.71	+3.2
1,239,328	+		IAI47_06090	0.71	+2.6
1,239,328	+		IAI47_06090	0.71	+0.3
1,239,329	-		IAI47_06090	0.71	+0.5
1,239,388	+		IAI47_06090	0.74	+1.0
1,239,388	+		IAI47_06090	0.74	+1.5
1,239,388	+		IAI47_06090	0.74	+0.6
1,239,389	-		IAI47_06090	0.74	+2.1
1,239,477	+		IAI47_06090	0.79	-2.4
1,239,478	-		IAI47_06090	0.79	+1.9
1,239,478	-		IAI47_06090	0.79	+1.1
1,239,478	-		IAI47_06090	0.79	-1.0
1,239,515	+		IAI47_06090	0.81	-0.4
1,239,524	+		IAI47_06090	0.81	+0.4
1,239,535	-		IAI47_06090	0.82	+0.6
1,239,535	-		IAI47_06090	0.82	+0.7
1,239,535	-		IAI47_06090	0.82	-0.2
1,239,535	-		IAI47_06090	0.82	+0.9
1,239,579	+		IAI47_06090	0.84	+1.1
1,239,579	+		IAI47_06090	0.84	+1.7
1,239,580	-		IAI47_06090	0.84	+0.4
1,239,580	-		IAI47_06090	0.84	+1.4
1,239,596	+		IAI47_06090	0.85	+0.4
1,239,596	+		IAI47_06090	0.85	-0.1
1,239,596	+		IAI47_06090	0.85	-0.1
1,239,596	+		IAI47_06090	0.85	+1.0
1,239,596	+		IAI47_06090	0.85	-1.3
1,239,597	-		IAI47_06090	0.85	-1.6
1,239,597	-		IAI47_06090	0.85	-0.6
1,239,597	-		IAI47_06090	0.85	+1.4
1,239,599	+		IAI47_06090	0.85	+1.6
1,239,599	+		IAI47_06090	0.85	-0.3
1,239,599	+		IAI47_06090	0.85	+1.2
1,239,599	+		IAI47_06090	0.85	+2.4
1,239,600	-		IAI47_06090	0.85	-0.1
1,239,600	-		IAI47_06090	0.85	+1.0
1,239,657	+		IAI47_06090	0.88	+0.1
1,239,657	+		IAI47_06090	0.88	+0.1
1,239,721	-				+2.1
1,239,771	+				+0.7
1,239,772	-				+0.3
1,239,772	-				+0.1
1,239,774	+				+0.4
1,239,774	+				+0.9
1,239,774	+				+0.8
1,239,775	-				+2.1
1,239,832	+				+1.3
1,239,833	-				+0.1
1,239,833	-				-2.1
1,239,898	+				+1.2
1,239,898	+				-0.5
1,239,899	-				-1.3
1,239,913	+				+0.7
1,239,913	+				-0.3
1,239,914	-				-0.6
1,240,157	+		IAI47_06095	0.47	+1.2
1,240,157	+		IAI47_06095	0.47	+0.2
1,240,157	+		IAI47_06095	0.47	+1.2
1,240,165	+		IAI47_06095	0.49	+0.9
1,240,165	+		IAI47_06095	0.49	+1.0
1,240,166	-		IAI47_06095	0.49	+0.6
1,240,206	-		IAI47_06095	0.56	-0.3
1,240,206	-		IAI47_06095	0.56	-0.9
1,240,231	+		IAI47_06095	0.61	-0.7
1,240,232	-		IAI47_06095	0.61	+0.1
1,240,259	+		IAI47_06095	0.66	+1.9
1,240,260	-		IAI47_06095	0.66	+1.7
1,240,260	-		IAI47_06095	0.66	+1.1
1,240,274	+		IAI47_06095	0.68	+1.7
1,240,274	+		IAI47_06095	0.68	+1.2
1,240,274	+		IAI47_06095	0.68	+0.8
1,240,274	+		IAI47_06095	0.68	+0.9
1,240,275	-		IAI47_06095	0.68	+2.3
1,240,288	+		IAI47_06095	0.71	-1.2
1,240,288	+		IAI47_06095	0.71	+1.2
1,240,288	+		IAI47_06095	0.71	+0.7
1,240,288	+		IAI47_06095	0.71	+0.5
1,240,289	-		IAI47_06095	0.71	+0.8
1,240,289	-		IAI47_06095	0.71	+0.5
1,240,289	-		IAI47_06095	0.71	+0.6
1,240,313	+		IAI47_06095	0.75	-0.6
1,240,313	+		IAI47_06095	0.75	-1.3
1,240,313	+		IAI47_06095	0.75	+2.6
1,240,314	-		IAI47_06095	0.75	-0.3
1,240,354	+		IAI47_06095	0.83	+1.4
1,240,427	+				+1.0
1,240,427	+				-3.3
1,240,427	+				+0.3
1,240,428	-				-0.6
1,240,460	+				+1.6
1,240,460	+				+3.0
1,240,461	-				-0.9
1,240,547	-		IAI47_06100	0.22	+0.7
1,240,637	+		IAI47_06100	0.42	+0.5
1,240,637	+		IAI47_06100	0.42	-1.0
1,240,638	-		IAI47_06100	0.42	+0.3
1,240,638	-		IAI47_06100	0.42	+2.9
1,240,645	+		IAI47_06100	0.44	+1.0
1,240,645	+		IAI47_06100	0.44	+2.3
1,240,646	-		IAI47_06100	0.44	-0.6
1,240,690	+		IAI47_06100	0.54	+2.5
1,240,690	+		IAI47_06100	0.54	+0.6
1,240,690	+		IAI47_06100	0.54	+1.5
1,240,690	+		IAI47_06100	0.54	+1.4
1,240,690	+		IAI47_06100	0.54	+0.3
1,240,690	+		IAI47_06100	0.54	+0.3
1,240,690	+		IAI47_06100	0.54	+1.0
1,240,690	+		IAI47_06100	0.54	-0.8
1,240,690	+		IAI47_06100	0.54	+0.5
1,240,691	-		IAI47_06100	0.54	+0.6
1,240,691	-		IAI47_06100	0.54	-1.6
1,240,691	-		IAI47_06100	0.54	-2.9
1,240,691	-		IAI47_06100	0.54	+0.9
1,240,691	-		IAI47_06100	0.54	+0.9
1,240,691	-		IAI47_06100	0.54	+1.3
1,240,691	-		IAI47_06100	0.54	-0.6
1,240,691	-		IAI47_06100	0.54	-1.1
1,240,691	-		IAI47_06100	0.54	+1.4
1,240,692	+		IAI47_06100	0.54	+0.3
1,240,692	+		IAI47_06100	0.54	-0.7
1,240,692	+		IAI47_06100	0.54	+1.2
1,240,692	+		IAI47_06100	0.54	-1.0
1,240,692	+		IAI47_06100	0.54	+1.4
1,240,692	+		IAI47_06100	0.54	+0.7
1,240,692	+		IAI47_06100	0.54	+1.3
1,240,693	-		IAI47_06100	0.54	+0.9
1,240,693	-		IAI47_06100	0.54	+0.9
1,240,693	-		IAI47_06100	0.54	-0.8
1,240,693	-		IAI47_06100	0.54	+0.5
1,240,693	-		IAI47_06100	0.54	+1.2
1,240,693	-		IAI47_06100	0.54	+0.9
1,240,693	-		IAI47_06100	0.54	+0.5
1,240,693	-		IAI47_06100	0.54	+1.4
1,240,723	+		IAI47_06100	0.61	+2.3
1,240,723	+		IAI47_06100	0.61	+2.4
1,240,723	+		IAI47_06100	0.61	+0.8
1,240,723	+		IAI47_06100	0.61	-0.2
1,240,724	-		IAI47_06100	0.61	+0.4
1,240,724	-		IAI47_06100	0.61	-0.4
1,240,724	-		IAI47_06100	0.61	+1.3
1,240,724	-		IAI47_06100	0.61	-1.3
1,240,784	+		IAI47_06100	0.74	+1.2
1,240,824	+		IAI47_06100	0.83	+1.2
1,240,825	-		IAI47_06100	0.83	+0.8
1,240,866	+				+2.4
1,240,866	+				+1.7
1,240,866	+				+0.1
1,240,867	-				+0.1
1,240,867	-				+0.8