Strain Fitness in Pantoea sp. MT58 around IAI47_05950

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,217,688	-		IAI47_05935	0.65	+1.4
1,217,688	-		IAI47_05935	0.65	+0.8
1,217,688	-		IAI47_05935	0.65	-0.1
1,217,688	-		IAI47_05935	0.65	-2.7
1,217,779	-		IAI47_05935	0.89	-0.4
1,217,814	+				+1.9
1,217,814	+				-0.9
1,217,815	-				-0.1
1,217,815	-				-0.7
1,217,815	-				+0.4
1,217,815	-				-2.4
1,217,815	-				+2.7
1,217,815	-				-0.6
1,217,815	-				+0.9
1,217,815	-				-0.2
1,217,815	-				+1.9
1,217,815	-				-1.0
1,217,861	+		IAI47_05940	0.19	+0.6
1,217,875	-		IAI47_05940	0.22	+1.7
1,217,875	-		IAI47_05940	0.22	-1.2
1,217,924	-		IAI47_05940	0.34	-0.4
1,217,924	-		IAI47_05940	0.34	+0.1
1,217,932	+		IAI47_05940	0.36	-2.0
1,217,932	+		IAI47_05940	0.36	+0.8
1,217,933	-		IAI47_05940	0.36	+1.0
1,217,933	-		IAI47_05940	0.36	+0.9
1,217,933	-		IAI47_05940	0.36	-0.4
1,217,933	-		IAI47_05940	0.36	+0.4
1,217,933	-		IAI47_05940	0.36	+0.6
1,217,942	+		IAI47_05940	0.39	-0.4
1,217,942	+		IAI47_05940	0.39	-0.8
1,217,942	+		IAI47_05940	0.39	+1.2
1,217,946	+		IAI47_05940	0.40	+1.1
1,217,946	+		IAI47_05940	0.40	-0.2
1,217,946	+		IAI47_05940	0.40	+0.2
1,217,946	+		IAI47_05940	0.40	-0.5
1,217,946	+		IAI47_05940	0.40	-2.6
1,217,946	+		IAI47_05940	0.40	+1.0
1,217,946	+		IAI47_05940	0.40	-1.7
1,217,946	+		IAI47_05940	0.40	+2.7
1,217,946	+		IAI47_05940	0.40	+0.7
1,217,946	+		IAI47_05940	0.40	-0.1
1,217,946	+		IAI47_05940	0.40	+0.7
1,217,946	+		IAI47_05940	0.40	-0.3
1,217,946	+		IAI47_05940	0.40	-1.3
1,217,947	-		IAI47_05940	0.40	-0.3
1,217,947	-		IAI47_05940	0.40	+1.0
1,217,947	-		IAI47_05940	0.40	-0.6
1,217,947	-		IAI47_05940	0.40	+1.1
1,217,947	-		IAI47_05940	0.40	+1.1
1,217,947	-		IAI47_05940	0.40	-0.3
1,217,947	-		IAI47_05940	0.40	-1.5
1,217,947	-		IAI47_05940	0.40	+3.8
1,217,947	-		IAI47_05940	0.40	+0.6
1,217,947	-		IAI47_05940	0.40	+1.4
1,217,949	+		IAI47_05940	0.40	-0.1
1,217,949	+		IAI47_05940	0.40	-0.4
1,217,949	+		IAI47_05940	0.40	-0.0
1,217,949	+		IAI47_05940	0.40	+1.6
1,217,949	+		IAI47_05940	0.40	-1.7
1,217,949	+		IAI47_05940	0.40	-0.2
1,217,949	+		IAI47_05940	0.40	-1.4
1,217,949	+		IAI47_05940	0.40	+0.8
1,217,949	+		IAI47_05940	0.40	+1.0
1,217,950	-		IAI47_05940	0.40	-0.7
1,217,950	-		IAI47_05940	0.40	+3.1
1,217,950	-		IAI47_05940	0.40	-1.6
1,217,950	-		IAI47_05940	0.40	-1.6
1,217,950	-		IAI47_05940	0.40	+1.5
1,217,950	-		IAI47_05940	0.40	-2.3
1,217,969	+		IAI47_05940	0.45	-0.3
1,217,969	+		IAI47_05940	0.45	-0.9
1,217,969	+		IAI47_05940	0.45	-1.3
1,217,969	+		IAI47_05940	0.45	-0.9
1,217,969	+		IAI47_05940	0.45	+0.3
1,217,969	+		IAI47_05940	0.45	+1.1
1,217,969	+		IAI47_05940	0.45	+0.0
1,217,970	-		IAI47_05940	0.45	-2.5
1,217,970	-		IAI47_05940	0.45	+0.4
1,217,970	-		IAI47_05940	0.45	-1.3
1,217,970	-		IAI47_05940	0.45	+0.2
1,217,970	-		IAI47_05940	0.45	-0.5
1,217,970	-		IAI47_05940	0.45	+1.0
1,217,970	-		IAI47_05940	0.45	+0.7
1,217,970	-		IAI47_05940	0.45	-0.3
1,217,970	-		IAI47_05940	0.45	-0.2
1,217,992	+		IAI47_05940	0.51	+0.6
1,217,992	+		IAI47_05940	0.51	-0.6
1,217,992	+		IAI47_05940	0.51	+0.5
1,217,993	-		IAI47_05940	0.51	-1.7
1,218,039	+		IAI47_05940	0.62	-0.6
1,218,039	+		IAI47_05940	0.62	+1.4
1,218,039	+		IAI47_05940	0.62	-0.8
1,218,039	+		IAI47_05940	0.62	-0.1
1,218,039	+		IAI47_05940	0.62	+0.3
1,218,040	-		IAI47_05940	0.63	-1.5
1,218,040	-		IAI47_05940	0.63	+0.9
1,218,077	+		IAI47_05940	0.72	-0.4
1,218,077	+		IAI47_05940	0.72	+0.4
1,218,077	+		IAI47_05940	0.72	+0.8
1,218,077	+		IAI47_05940	0.72	+0.5
1,218,078	-		IAI47_05940	0.72	+3.1
1,218,096	+		IAI47_05940	0.77	-1.1
1,218,097	-		IAI47_05940	0.77	-0.9
1,218,161	+				-0.6
1,218,161	+				-0.6
1,218,171	-				+0.4
1,218,328	-		IAI47_05945	0.28	-0.4
1,218,328	-		IAI47_05945	0.28	-0.6
1,218,336	+		IAI47_05945	0.30	+0.1
1,218,343	+		IAI47_05945	0.31	-0.3
1,218,344	-		IAI47_05945	0.31	+0.1
1,218,344	-		IAI47_05945	0.31	-1.7
1,218,344	-		IAI47_05945	0.31	+3.8
1,218,344	-		IAI47_05945	0.31	-1.1
1,218,344	-		IAI47_05945	0.31	+2.9
1,218,345	+		IAI47_05945	0.31	-1.1
1,218,345	+		IAI47_05945	0.31	+3.0
1,218,346	-		IAI47_05945	0.32	-0.6
1,218,346	-		IAI47_05945	0.32	+0.5
1,218,395	+		IAI47_05945	0.41	+0.7
1,218,395	+		IAI47_05945	0.41	-1.9
1,218,395	+		IAI47_05945	0.41	-1.6
1,218,396	-		IAI47_05945	0.41	-1.1
1,218,427	+		IAI47_05945	0.48	+0.7
1,218,427	+		IAI47_05945	0.48	-1.0
1,218,427	+		IAI47_05945	0.48	-0.9
1,218,428	-		IAI47_05945	0.48	-1.0
1,218,428	-		IAI47_05945	0.48	-0.8
1,218,471	+		IAI47_05945	0.56	-0.3
1,218,472	-		IAI47_05945	0.57	+1.1
1,218,489	+		IAI47_05945	0.60	-0.6
1,218,489	+		IAI47_05945	0.60	-0.1
1,218,538	+		IAI47_05945	0.70	-0.4
1,218,539	-		IAI47_05945	0.70	-1.1
1,218,539	-		IAI47_05945	0.70	-0.4
1,218,613	-		IAI47_05945	0.85	-1.7
1,218,615	+		IAI47_05945	0.85	+2.8
1,218,615	+		IAI47_05945	0.85	+0.5
1,218,615	+		IAI47_05945	0.85	-0.2
1,218,616	-		IAI47_05945	0.85	-0.3
1,218,616	-		IAI47_05945	0.85	-0.1
1,218,616	-		IAI47_05945	0.85	-1.3
1,218,616	-		IAI47_05945	0.85	+0.3
1,218,616	-		IAI47_05945	0.85	+1.4
1,218,641	-				-0.7
1,218,693	+				-1.0
1,218,693	+				+0.2
1,218,693	+				-0.0
1,218,693	+				-0.0
1,218,693	+				+0.6
1,218,693	+				+0.4
1,218,693	+				-0.9
1,218,694	-				-2.4
1,218,694	-				+3.5
1,218,871	+		IAI47_05950	0.51	+1.7
1,218,926	-		IAI47_05950	0.65	+0.9
1,218,926	-		IAI47_05950	0.65	+0.5
1,218,947	+		IAI47_05950	0.70	-0.9
1,218,947	+		IAI47_05950	0.70	+0.2
1,218,948	-		IAI47_05950	0.71	-1.3
1,218,948	-		IAI47_05950	0.71	+0.2
1,218,962	+		IAI47_05950	0.74	-0.6
1,218,978	+		IAI47_05950	0.78	-1.5
1,218,979	-		IAI47_05950	0.79	+2.7
1,218,986	+		IAI47_05950	0.80	+3.4
1,218,986	+		IAI47_05950	0.80	+0.0
1,218,986	+		IAI47_05950	0.80	+1.5
1,218,986	+		IAI47_05950	0.80	-0.3
1,218,987	-		IAI47_05950	0.81	-1.2
1,218,987	-		IAI47_05950	0.81	+2.3
1,218,995	+		IAI47_05950	0.83	+0.7
1,218,996	-		IAI47_05950	0.83	+0.4
1,219,058	+				-0.1
1,219,059	-				+0.3
1,219,059	-				-1.0
1,219,110	+		IAI47_05955	0.10	+1.4
1,219,110	+		IAI47_05955	0.10	+0.2
1,219,111	-		IAI47_05955	0.11	+0.6
1,219,156	+		IAI47_05955	0.19	-0.6
1,219,156	+		IAI47_05955	0.19	-0.9
1,219,156	+		IAI47_05955	0.19	-1.0
1,219,156	+		IAI47_05955	0.19	-1.7
1,219,156	+		IAI47_05955	0.19	+1.6
1,219,157	-		IAI47_05955	0.19	-0.4
1,219,269	-		IAI47_05955	0.40	+0.6
1,219,350	+		IAI47_05955	0.54	-1.6
1,219,372	+		IAI47_05955	0.58	-0.1
1,219,373	-		IAI47_05955	0.59	+0.0
1,219,452	+		IAI47_05955	0.73	-1.2
1,219,452	+		IAI47_05955	0.73	-1.3
1,219,453	-		IAI47_05955	0.73	-1.0
1,219,453	-		IAI47_05955	0.73	-0.9
1,219,506	+		IAI47_05955	0.83	+0.8
1,219,507	-		IAI47_05955	0.83	+1.1
1,219,537	+		IAI47_05955	0.89	+0.5
1,219,538	-		IAI47_05955	0.89	-0.5
1,219,538	-		IAI47_05955	0.89	-0.0
1,219,548	+				-0.4
1,219,548	+				-1.0
1,219,556	+				+1.1
1,219,556	+				-1.6
1,219,557	-				-1.1
1,219,557	-				-0.7
1,219,557	-				+1.5
1,219,557	-				+0.3
1,219,557	-				+0.7
1,219,557	-				-1.5
1,219,579	+				+0.3
1,219,579	+				+1.1
1,219,579	+				-2.2
1,219,579	+				+0.4
1,219,579	+				-0.7
1,219,580	-				-1.1
1,219,596	+				+0.1
1,219,596	+				+0.5
1,219,597	-				+2.6
1,219,601	+				+0.4
1,219,601	+				+2.7
1,219,601	+				-0.3
1,219,601	+				-0.6
1,219,601	+				-1.2
1,219,601	+				+0.5
1,219,601	+				+0.3
1,219,602	-				+0.3
1,219,602	-				+1.6
1,219,602	-				-0.6
1,219,602	-				-0.3
1,219,602	-				+0.3
1,219,615	+				+0.2
1,219,615	+				+1.2
1,219,615	+				-1.4
1,219,616	-				-0.3
1,219,616	-				-0.7
1,219,621	+				-1.9
1,219,622	-				-1.3
1,219,622	-				-0.0
1,219,676	+				-0.6
1,219,714	+				+1.6
1,219,714	+				+0.3
1,219,714	+				-1.5
1,219,715	-				+0.8
1,219,735	+		IAI47_05960	0.12	+0.2
1,219,735	+		IAI47_05960	0.12	+2.1
1,219,744	-		IAI47_05960	0.12	-0.4
1,219,744	-		IAI47_05960	0.12	-0.5
1,219,744	-		IAI47_05960	0.12	-1.0
1,219,795	-		IAI47_05960	0.17	+0.3
1,219,795	-		IAI47_05960	0.17	-0.0
1,219,812	+		IAI47_05960	0.18	-1.7
1,219,813	-		IAI47_05960	0.18	-1.6
1,219,813	-		IAI47_05960	0.18	+0.0
1,219,845	+		IAI47_05960	0.21	-0.1
1,219,845	+		IAI47_05960	0.21	-0.9
1,219,845	+		IAI47_05960	0.21	+1.6
1,219,845	+		IAI47_05960	0.21	-1.1
1,219,945	-		IAI47_05960	0.30	+0.4
1,219,991	+		IAI47_05960	0.34	-2.2
1,219,991	+		IAI47_05960	0.34	+0.5
1,219,992	-		IAI47_05960	0.34	+1.7
1,220,028	-		IAI47_05960	0.37	+0.1
1,220,035	+		IAI47_05960	0.38	+0.7
1,220,036	-		IAI47_05960	0.38	+1.3
1,220,036	-		IAI47_05960	0.38	-1.9