Strain Fitness in Pantoea sp. MT58 around IAI47_17650

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,744,417	+		IAI47_17640	0.78	+0.7
3,744,417	+		IAI47_17640	0.78	+1.4
3,744,417	+		IAI47_17640	0.78	+1.4
3,744,417	+		IAI47_17640	0.78	+0.1
3,744,417	+		IAI47_17640	0.78	-1.4
3,744,418	-		IAI47_17640	0.78	-0.8
3,744,418	-		IAI47_17640	0.78	+0.8
3,744,418	-		IAI47_17640	0.78	+0.1
3,744,418	-		IAI47_17640	0.78	+3.3
3,744,418	-		IAI47_17640	0.78	-1.6
3,744,418	-		IAI47_17640	0.78	+0.1
3,744,423	+		IAI47_17640	0.79	-1.1
3,744,480	+		IAI47_17640	0.82	+3.7
3,744,480	+		IAI47_17640	0.82	+0.3
3,744,481	-		IAI47_17640	0.82	-0.3
3,744,481	-		IAI47_17640	0.82	-1.3
3,744,628	+				-1.3
3,744,628	+				+0.8
3,744,628	+				+2.1
3,744,628	+				-3.1
3,744,629	-				+0.7
3,744,629	-				-0.2
3,744,629	-				+0.2
3,744,629	-				-0.7
3,744,629	-				+0.3
3,744,631	+				+0.1
3,744,631	+				+1.0
3,744,631	+				-0.4
3,744,631	+				-0.4
3,744,631	+				+0.6
3,744,631	+				+1.0
3,744,631	+				+0.3
3,744,632	-				-1.4
3,744,632	-				-0.7
3,744,632	-				-1.5
3,744,666	+				+1.0
3,744,667	-				+0.4
3,744,667	-				+0.3
3,744,697	+				-0.4
3,744,697	+				-0.6
3,744,698	-				-1.8
3,744,698	-				+1.1
3,744,745	+				+0.1
3,744,745	+				-1.0
3,744,745	+				-1.0
3,744,745	+				-0.1
3,744,746	-				+2.4
3,744,746	-				-0.2
3,744,746	-				+0.4
3,744,773	+		IAI47_17645	0.14	-1.3
3,744,857	+		IAI47_17645	0.55	-0.6
3,744,857	+		IAI47_17645	0.55	-1.0
3,744,857	+		IAI47_17645	0.55	+1.3
3,744,857	+		IAI47_17645	0.55	-0.3
3,744,857	+		IAI47_17645	0.55	-1.2
3,744,858	-		IAI47_17645	0.56	+0.5
3,744,858	-		IAI47_17645	0.56	+0.6
3,744,859	+		IAI47_17645	0.56	-1.0
3,744,966	+				+0.1
3,745,032	+				+1.5
3,745,032	+				+1.1
3,745,032	+				-0.3
3,745,032	+				-1.9
3,745,032	+				+2.3
3,745,032	+				-0.1
3,745,032	+				+0.2
3,745,032	+				-0.5
3,745,033	-				+1.4
3,745,033	-				+0.3
3,745,033	-				-1.1
3,745,033	-				-1.8
3,745,033	-				+1.2
3,745,033	-				-0.0
3,745,148	+				-1.6
3,745,148	+				-0.6
3,745,149	-				+0.3
3,745,149	-				-1.8
3,745,149	-				-0.3
3,745,180	+				+0.3
3,745,180	+				+1.2
3,745,180	+				-1.5
3,745,180	+				-2.4
3,745,180	+				-0.0
3,745,180	+				+0.9
3,745,180	+				-0.4
3,745,180	+				+1.6
3,745,181	-				+0.6
3,745,181	-				-0.1
3,745,181	-				+1.2
3,745,181	-				-0.0
3,745,181	-				-1.0
3,745,181	-				-0.9
3,745,181	-				-0.3
3,745,181	-				+0.8
3,745,181	-				+0.1
3,745,188	+				+0.1
3,745,188	+				+0.1
3,745,189	-				-1.3
3,745,189	-				-1.0
3,745,189	-				+0.3
3,745,233	+				+0.8
3,745,233	+				-0.3
3,745,234	-				-0.8
3,745,234	-				-2.7
3,745,256	+				-0.3
3,745,263	+				+1.3
3,745,272	+				+0.4
3,745,273	-				+0.7
3,745,273	-				+0.3
3,745,273	-				+0.4
3,745,279	+				+1.2
3,745,279	+				-0.7
3,745,279	+				-2.4
3,745,279	+				+1.2
3,745,280	-				+1.3
3,745,280	-				+0.1
3,745,337	+				-1.4
3,745,337	+				+1.4
3,745,338	-				+0.3
3,745,338	-				+1.5
3,745,338	-				-0.9
3,745,346	+				-0.8
3,745,346	+				-0.9
3,745,347	-				+0.6
3,745,347	-				-0.7
3,745,390	+				+1.7
3,745,391	-				-0.8
3,745,439	+				-1.6
3,745,439	+				-2.0
3,745,440	-				+1.5
3,745,442	+				+0.6
3,745,477	-		IAI47_17650	0.10	+3.1
3,745,497	+				-0.3
3,745,497	+		IAI47_17650	0.12	+0.3
3,745,498	-		IAI47_17650	0.12	-0.7
3,745,499	+		IAI47_17650	0.12	-0.4
3,745,499	+		IAI47_17650	0.12	-1.7
3,745,499	+		IAI47_17650	0.12	-0.9
3,745,500	-		IAI47_17650	0.12	-0.3
3,745,632	+		IAI47_17650	0.21	+0.8
3,745,633	-		IAI47_17650	0.22	-2.3
3,745,633	-		IAI47_17650	0.22	+0.0
3,745,633	-		IAI47_17650	0.22	+1.0
3,745,664	+		IAI47_17650	0.24	-0.2
3,745,664	+		IAI47_17650	0.24	-1.3
3,745,664	+		IAI47_17650	0.24	+0.2
3,745,664	+		IAI47_17650	0.24	-0.1
3,745,664	+		IAI47_17650	0.24	-1.8
3,745,664	+		IAI47_17650	0.24	-1.3
3,745,664	+		IAI47_17650	0.24	+0.6
3,745,664	+		IAI47_17650	0.24	+4.1
3,745,664	+		IAI47_17650	0.24	-0.5
3,745,664	+		IAI47_17650	0.24	-0.4
3,745,665	-		IAI47_17650	0.24	+1.7
3,745,665	-		IAI47_17650	0.24	-1.3
3,745,665	-		IAI47_17650	0.24	-0.8
3,745,665	-		IAI47_17650	0.24	-0.7
3,745,665	-		IAI47_17650	0.24	-1.6
3,745,665	-		IAI47_17650	0.24	+0.4
3,745,665	-		IAI47_17650	0.24	+1.7
3,745,665	-		IAI47_17650	0.24	+1.6
3,745,684	-		IAI47_17650	0.25	-1.1
3,745,733	+		IAI47_17650	0.29	-1.6
3,745,733	+		IAI47_17650	0.29	+1.1
3,745,733	+		IAI47_17650	0.29	-0.8
3,745,734	-		IAI47_17650	0.29	+0.0
3,745,734	-		IAI47_17650	0.29	+0.1
3,745,734	-		IAI47_17650	0.29	-1.0
3,745,734	-		IAI47_17650	0.29	+1.9
3,745,734	-		IAI47_17650	0.29	+0.1
3,745,794	+		IAI47_17650	0.33	-0.4
3,745,794	+		IAI47_17650	0.33	-0.1
3,745,794	+		IAI47_17650	0.33	-0.4
3,745,794	+		IAI47_17650	0.33	-0.0
3,745,794	+		IAI47_17650	0.33	+0.7
3,745,794	+		IAI47_17650	0.33	-1.2
3,745,794	+		IAI47_17650	0.33	+0.9
3,745,794	+		IAI47_17650	0.33	-1.2
3,745,794	+		IAI47_17650	0.33	-2.0
3,745,795	-		IAI47_17650	0.33	-0.7
3,745,795	-		IAI47_17650	0.33	-2.3
3,745,795	-		IAI47_17650	0.33	+2.1
3,745,795	-		IAI47_17650	0.33	+1.5
3,745,795	-		IAI47_17650	0.33	-0.5
3,745,795	-		IAI47_17650	0.33	-1.5
3,746,053	+		IAI47_17650	0.51	+1.3
3,746,053	+		IAI47_17650	0.51	-2.9
3,746,053	+		IAI47_17650	0.51	-1.1
3,746,053	+		IAI47_17650	0.51	+0.4
3,746,053	+		IAI47_17650	0.51	-1.2
3,746,054	-		IAI47_17650	0.51	-1.4
3,746,054	-		IAI47_17650	0.51	-0.7
3,746,054	-		IAI47_17650	0.51	+0.4
3,746,155	+		IAI47_17650	0.59	-0.3
3,746,155	+		IAI47_17650	0.59	-1.9
3,746,155	+		IAI47_17650	0.59	+1.6
3,746,155	+		IAI47_17650	0.59	-0.8
3,746,155	+		IAI47_17650	0.59	-1.0
3,746,155	+		IAI47_17650	0.59	-0.1
3,746,155	+		IAI47_17650	0.59	+0.9
3,746,155	+		IAI47_17650	0.59	+2.3
3,746,155	+		IAI47_17650	0.59	-0.6
3,746,156	-		IAI47_17650	0.59	-0.7
3,746,156	-		IAI47_17650	0.59	-0.7
3,746,156	-		IAI47_17650	0.59	-1.1
3,746,156	-		IAI47_17650	0.59	-0.8
3,746,156	-		IAI47_17650	0.59	-1.0
3,746,156	-		IAI47_17650	0.59	+1.2
3,746,156	-		IAI47_17650	0.59	-0.4
3,746,237	+		IAI47_17650	0.64	+0.7
3,746,238	-		IAI47_17650	0.64	-0.1
3,746,295	+		IAI47_17650	0.69	+0.1
3,746,295	+		IAI47_17650	0.69	+1.2
3,746,295	+		IAI47_17650	0.69	+0.6
3,746,295	+		IAI47_17650	0.69	+2.4
3,746,295	+		IAI47_17650	0.69	-1.4
3,746,295	+		IAI47_17650	0.69	+0.1
3,746,296	-		IAI47_17650	0.69	+0.2
3,746,296	-		IAI47_17650	0.69	-0.4
3,746,296	-		IAI47_17650	0.69	+1.7
3,746,296	-		IAI47_17650	0.69	-0.7
3,746,369	+		IAI47_17650	0.74	+1.1
3,746,369	+		IAI47_17650	0.74	-2.5
3,746,370	-		IAI47_17650	0.74	-1.1
3,746,370	-		IAI47_17650	0.74	-1.3
3,746,370	-		IAI47_17650	0.74	+1.4
3,746,443	+		IAI47_17650	0.79	+0.1
3,746,443	+		IAI47_17650	0.79	+1.2
3,746,443	+		IAI47_17650	0.79	+1.5
3,746,443	+		IAI47_17650	0.79	-0.3
3,746,444	-		IAI47_17650	0.79	+0.5
3,746,444	-		IAI47_17650	0.79	-0.7
3,746,512	-		IAI47_17650	0.84	-1.6
3,746,565	+		IAI47_17650	0.88	+0.3
3,746,565	+		IAI47_17650	0.88	+0.6
3,746,565	+		IAI47_17650	0.88	-1.5
3,746,565	+		IAI47_17650	0.88	-0.7
3,746,565	+		IAI47_17650	0.88	+1.0
3,746,566	-		IAI47_17650	0.88	+0.0
3,746,585	+		IAI47_17650	0.89	-0.4
3,746,585	+		IAI47_17650	0.89	-0.7
3,746,585	+		IAI47_17650	0.89	+0.3
3,746,586	-		IAI47_17650	0.89	-0.1
3,746,586	-		IAI47_17650	0.89	+0.7
3,746,587	-		IAI47_17650	0.89	-0.5
3,746,601	-				-0.6
3,746,617	+				-1.3
3,746,617	+				-1.0
3,746,617	+				-0.7
3,746,618	-				-0.3
3,746,625	+				+0.5
3,746,626	-				+0.7
3,746,626	-				+1.8
3,746,626	-				-1.6
3,746,644	+				+1.0
3,746,644	+				-0.9
3,746,645	-				-1.1
3,746,645	-				+1.8
3,746,645	-				+0.7
3,746,645	-				-0.8
3,746,645	-				-1.7
3,746,645	-				-0.9
3,746,655	-				-0.9
3,746,697	+				-1.0
3,746,698	-				+1.0
3,746,698	-				+2.1
3,746,732	+				-2.0
3,746,732	+				-1.7
3,746,732	+				-1.7
3,746,733	-				+1.8
3,746,733	-				+4.4
3,746,733	-				-1.0
3,746,775	+				-0.8
3,746,775	+				+1.4
3,746,776	-				+1.3
3,746,785	+				+0.4
3,746,785	+				-2.4
3,746,786	-				+0.5
3,746,786	-				+0.2
3,746,786	-				-1.1
3,746,789	+				+0.5
3,746,789	+				+1.9
3,746,789	+				+0.7
3,746,790	-				-1.7
3,746,790	-				+2.8
3,746,790	-				-0.7
3,746,790	-				+1.1
3,746,790	-				-1.3
3,746,790	-				+0.0
3,746,790	-				+1.8
3,746,790	-				+1.9
3,746,799	+				-0.1
3,746,799	+				+0.2
3,746,799	+				+0.4
3,746,807	+				+2.6
3,746,840	+				+0.1
3,746,840	+				-0.5
3,746,841	-				+0.3
3,746,841	-				-0.3
3,746,841	-				+0.1
3,746,963	+		IAI47_17655	0.14	-0.9
3,746,963	+		IAI47_17655	0.14	-0.6
3,746,963	+		IAI47_17655	0.14	+0.3
3,746,963	+		IAI47_17655	0.14	+2.2
3,746,963	+		IAI47_17655	0.14	+1.4
3,746,964	-		IAI47_17655	0.14	-0.7
3,746,964	-		IAI47_17655	0.14	-1.6
3,746,964	-		IAI47_17655	0.14	+0.5
3,746,964	-		IAI47_17655	0.14	+1.8
3,746,964	-		IAI47_17655	0.14	+0.7
3,746,964	-		IAI47_17655	0.14	+0.9
3,746,964	-		IAI47_17655	0.14	+1.2
3,746,964	-		IAI47_17655	0.14	+0.5
3,746,964	-		IAI47_17655	0.14	+0.5
3,746,964	-		IAI47_17655	0.14	+0.4
3,746,966	+		IAI47_17655	0.14	-0.6
3,746,966	+		IAI47_17655	0.14	+0.5
3,746,966	+		IAI47_17655	0.14	+0.5
3,746,966	+		IAI47_17655	0.14	-0.3
3,746,966	+		IAI47_17655	0.14	+0.7
3,746,966	+		IAI47_17655	0.14	-0.7
3,746,966	+		IAI47_17655	0.14	+0.3
3,746,966	+		IAI47_17655	0.14	-1.3
3,746,967	-		IAI47_17655	0.14	+0.8
3,746,967	-		IAI47_17655	0.14	+1.7
3,746,967	-		IAI47_17655	0.14	+2.5
3,746,967	-		IAI47_17655	0.14	+0.6
3,746,967	-		IAI47_17655	0.14	+0.7
3,746,967	-		IAI47_17655	0.14	+1.0
3,746,967	-		IAI47_17655	0.14	+0.6
3,746,967	-		IAI47_17655	0.14	+2.6
3,746,967	-		IAI47_17655	0.14	+0.3
3,746,967	-		IAI47_17655	0.14	-0.1
3,746,967	-		IAI47_17655	0.14	-0.3
3,747,020	+		IAI47_17655	0.18	-1.4
3,747,020	+		IAI47_17655	0.18	+0.5
3,747,021	-		IAI47_17655	0.18	+0.7
3,747,063	-		IAI47_17655	0.21	-0.1
3,747,079	+		IAI47_17655	0.23	+0.7
3,747,079	+		IAI47_17655	0.23	+1.2
3,747,080	-		IAI47_17655	0.23	+0.6
3,747,080	-		IAI47_17655	0.23	+0.4
3,747,089	+		IAI47_17655	0.23	+0.9
3,747,089	+		IAI47_17655	0.23	-0.9
3,747,089	+		IAI47_17655	0.23	+3.3
3,747,089	+		IAI47_17655	0.23	-1.7
3,747,089	+		IAI47_17655	0.23	+0.6
3,747,090	-		IAI47_17655	0.23	+2.1
3,747,090	-		IAI47_17655	0.23	+0.3
3,747,090	-		IAI47_17655	0.23	-1.8
3,747,090	-		IAI47_17655	0.23	+0.8
3,747,090	-		IAI47_17655	0.23	-0.7
3,747,091	+		IAI47_17655	0.23	+0.1
3,747,091	+		IAI47_17655	0.23	-0.1
3,747,111	-		IAI47_17655	0.25	-0.7
3,747,111	-		IAI47_17655	0.25	-1.5
3,747,136	+		IAI47_17655	0.27	-0.1
3,747,136	+		IAI47_17655	0.27	-0.1
3,747,136	+		IAI47_17655	0.27	+0.5
3,747,136	+		IAI47_17655	0.27	+2.4
3,747,136	+		IAI47_17655	0.27	+0.7
3,747,136	+		IAI47_17655	0.27	-0.9
3,747,137	-		IAI47_17655	0.27	+0.2
3,747,137	-		IAI47_17655	0.27	+0.8
3,747,137	-		IAI47_17655	0.27	+0.0
3,747,137	-		IAI47_17655	0.27	-0.5
3,747,137	-		IAI47_17655	0.27	+0.9
3,747,137	-		IAI47_17655	0.27	+0.1
3,747,247	+		IAI47_17655	0.35	+0.3
3,747,247	+		IAI47_17655	0.35	+1.5
3,747,248	-		IAI47_17655	0.35	-1.1
3,747,266	+		IAI47_17655	0.37	+1.1
3,747,349	+		IAI47_17655	0.43	+0.5
3,747,440	+		IAI47_17655	0.50	-1.3
3,747,440	+		IAI47_17655	0.50	+2.2
3,747,440	+		IAI47_17655	0.50	+1.7
3,747,440	+		IAI47_17655	0.50	+0.9
3,747,441	-		IAI47_17655	0.50	+1.7
3,747,441	-		IAI47_17655	0.50	+0.3
3,747,441	-		IAI47_17655	0.50	+1.4
3,747,463	+		IAI47_17655	0.52	-1.1
3,747,463	+		IAI47_17655	0.52	-0.6
3,747,463	+		IAI47_17655	0.52	+1.0
3,747,464	-		IAI47_17655	0.52	-1.0
3,747,464	-		IAI47_17655	0.52	+0.8
3,747,482	+		IAI47_17655	0.53	+0.2
3,747,482	+		IAI47_17655	0.53	-0.3
3,747,483	-		IAI47_17655	0.53	+1.7
3,747,483	-		IAI47_17655	0.53	-1.6
3,747,512	+		IAI47_17655	0.56	-1.9
3,747,512	+		IAI47_17655	0.56	-1.3
3,747,512	+		IAI47_17655	0.56	-0.4
3,747,512	+		IAI47_17655	0.56	+1.2
3,747,513	-		IAI47_17655	0.56	-1.4
3,747,513	-		IAI47_17655	0.56	+1.2
3,747,521	+		IAI47_17655	0.56	+1.1
3,747,521	+		IAI47_17655	0.56	+0.7
3,747,521	+		IAI47_17655	0.56	+0.7
3,747,521	+		IAI47_17655	0.56	-1.1
3,747,522	-		IAI47_17655	0.56	+1.7
3,747,522	-		IAI47_17655	0.56	-1.5
3,747,522	-		IAI47_17655	0.56	-0.3
3,747,522	-		IAI47_17655	0.56	+0.5
3,747,727	+		IAI47_17655	0.72	-1.7
3,747,727	+		IAI47_17655	0.72	-0.3
3,747,727	+		IAI47_17655	0.72	-1.8