Strain Fitness in Pantoea sp. MT58 around IAI47_15175

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,199,232	+		IAI47_15170	0.11	+0.8
3,199,233	-		IAI47_15170	0.11	+0.1
3,199,319	+		IAI47_15170	0.19	+1.4
3,199,319	+		IAI47_15170	0.19	-0.7
3,199,320	-		IAI47_15170	0.19	+1.2
3,199,396	-		IAI47_15170	0.26	-0.7
3,199,396	-		IAI47_15170	0.26	-2.6
3,199,396	-		IAI47_15170	0.26	-0.6
3,199,396	-		IAI47_15170	0.26	-0.2
3,199,421	+		IAI47_15170	0.29	-0.5
3,199,431	+		IAI47_15170	0.29	+2.4
3,199,499	-		IAI47_15170	0.36	+0.8
3,199,499	-		IAI47_15170	0.36	-0.6
3,199,502	+		IAI47_15170	0.36	-1.0
3,199,502	+		IAI47_15170	0.36	-0.3
3,199,502	+		IAI47_15170	0.36	+0.3
3,199,575	-		IAI47_15170	0.43	-1.1
3,199,575	-		IAI47_15170	0.43	+1.0
3,199,575	-		IAI47_15170	0.43	-0.8
3,199,601	+		IAI47_15170	0.45	+0.7
3,199,602	-		IAI47_15170	0.46	+0.5
3,199,602	-		IAI47_15170	0.46	-0.9
3,199,656	+		IAI47_15170	0.51	+0.1
3,199,656	+		IAI47_15170	0.51	-0.1
3,199,656	+		IAI47_15170	0.51	+0.9
3,199,657	-		IAI47_15170	0.51	+0.9
3,199,657	-		IAI47_15170	0.51	-1.3
3,199,657	-		IAI47_15170	0.51	-0.9
3,199,726	+		IAI47_15170	0.57	+0.7
3,199,726	+		IAI47_15170	0.57	+0.7
3,199,727	-		IAI47_15170	0.57	+0.6
3,199,727	-		IAI47_15170	0.57	-0.2
3,199,727	-		IAI47_15170	0.57	+0.1
3,199,727	-		IAI47_15170	0.57	+1.3
3,199,771	-		IAI47_15170	0.61	+1.3
3,199,830	+		IAI47_15170	0.67	+0.5
3,199,830	+		IAI47_15170	0.67	-0.9
3,199,830	+		IAI47_15170	0.67	-0.1
3,199,830	+		IAI47_15170	0.67	+1.5
3,199,872	+		IAI47_15170	0.71	+1.0
3,199,872	+		IAI47_15170	0.71	-2.5
3,199,872	+		IAI47_15170	0.71	+4.3
3,199,872	+		IAI47_15170	0.71	-0.3
3,199,873	-		IAI47_15170	0.71	+0.9
3,199,873	-		IAI47_15170	0.71	+2.5
3,199,873	-		IAI47_15170	0.71	+2.5
3,199,873	-		IAI47_15170	0.71	+1.9
3,199,877	+		IAI47_15170	0.71	-1.1
3,199,877	+		IAI47_15170	0.71	+0.1
3,199,877	+		IAI47_15170	0.71	-0.9
3,199,877	+		IAI47_15170	0.71	+0.6
3,199,877	+		IAI47_15170	0.71	+1.2
3,199,877	+		IAI47_15170	0.71	-0.5
3,199,877	+		IAI47_15170	0.71	-0.0
3,199,877	+		IAI47_15170	0.71	+0.1
3,199,877	+		IAI47_15170	0.71	+1.2
3,199,878	-		IAI47_15170	0.71	-2.0
3,199,878	-		IAI47_15170	0.71	-0.5
3,199,878	-		IAI47_15170	0.71	-1.7
3,199,878	-		IAI47_15170	0.71	+1.9
3,199,878	-		IAI47_15170	0.71	+0.1
3,199,878	-		IAI47_15170	0.71	-0.9
3,199,955	+		IAI47_15170	0.79	+2.4
3,199,955	+		IAI47_15170	0.79	-0.0
3,199,955	+		IAI47_15170	0.79	+1.1
3,199,955	+		IAI47_15170	0.79	+1.5
3,199,956	-		IAI47_15170	0.79	+0.4
3,199,976	+		IAI47_15170	0.81	+0.6
3,199,976	+		IAI47_15170	0.81	-0.5
3,199,977	-		IAI47_15170	0.81	-0.9
3,199,977	-		IAI47_15170	0.81	+0.1
3,200,025	+		IAI47_15170	0.85	+0.3
3,200,026	-		IAI47_15170	0.85	+0.7
3,200,172	+				+0.3
3,200,173	-				-1.7
3,200,174	+				-0.2
3,200,174	+				-0.9
3,200,174	+				+2.4
3,200,174	+				+1.0
3,200,174	+				-2.1
3,200,174	+				-0.5
3,200,175	-				-0.1
3,200,175	-				+1.1
3,200,181	+				-0.0
3,200,182	-				-0.8
3,200,351	+		IAI47_15175	0.12	+0.5
3,200,369	+		IAI47_15175	0.14	+0.6
3,200,369	+		IAI47_15175	0.14	+1.2
3,200,369	+		IAI47_15175	0.14	-0.5
3,200,370	-		IAI47_15175	0.14	+4.2
3,200,370	-		IAI47_15175	0.14	+0.2
3,200,370	-		IAI47_15175	0.14	-1.1
3,200,370	-		IAI47_15175	0.14	-0.8
3,200,370	-		IAI47_15175	0.14	-0.5
3,200,370	-		IAI47_15175	0.14	+1.2
3,200,370	-		IAI47_15175	0.14	-0.8
3,200,370	-		IAI47_15175	0.14	+1.1
3,200,370	-		IAI47_15175	0.14	+1.4
3,200,370	-		IAI47_15175	0.14	+1.6
3,200,476	+		IAI47_15175	0.24	-0.9
3,200,491	-		IAI47_15175	0.26	+0.3
3,200,519	+		IAI47_15175	0.28	+1.0
3,200,519	+		IAI47_15175	0.28	-1.1
3,200,519	+		IAI47_15175	0.28	+1.9
3,200,520	-		IAI47_15175	0.28	-0.4
3,200,520	-		IAI47_15175	0.28	-0.6
3,200,520	-		IAI47_15175	0.28	-0.8
3,200,555	+		IAI47_15175	0.32	+0.9
3,200,555	+		IAI47_15175	0.32	+1.2
3,200,555	+		IAI47_15175	0.32	-0.3
3,200,556	-		IAI47_15175	0.32	-1.0
3,200,640	+		IAI47_15175	0.40	+1.2
3,200,640	+		IAI47_15175	0.40	+0.5
3,200,641	-		IAI47_15175	0.40	+1.9
3,200,641	-		IAI47_15175	0.40	+1.9
3,200,646	+		IAI47_15175	0.40	-1.1
3,200,784	-		IAI47_15175	0.53	-2.3
3,200,784	-		IAI47_15175	0.53	+1.6
3,200,807	+		IAI47_15175	0.56	+2.3
3,200,807	+		IAI47_15175	0.56	+0.3
3,200,840	+		IAI47_15175	0.59	+0.4
3,200,884	+		IAI47_15175	0.63	+1.0
3,200,884	+		IAI47_15175	0.63	+0.1
3,200,884	+		IAI47_15175	0.63	+0.2
3,200,885	-		IAI47_15175	0.63	-0.7
3,200,959	+		IAI47_15175	0.70	-1.7
3,200,959	+		IAI47_15175	0.70	+1.3
3,200,959	+		IAI47_15175	0.70	-0.3
3,200,998	+		IAI47_15175	0.74	+0.0
3,200,998	+		IAI47_15175	0.74	+0.4
3,200,999	-		IAI47_15175	0.74	-2.2
3,200,999	-		IAI47_15175	0.74	-0.5
3,201,040	+		IAI47_15175	0.78	-1.2
3,201,040	+		IAI47_15175	0.78	+0.2
3,201,041	-		IAI47_15175	0.78	-1.5
3,201,041	-		IAI47_15175	0.78	+1.3
3,201,081	+		IAI47_15175	0.82	-0.9
3,201,081	+		IAI47_15175	0.82	+1.0
3,201,082	-		IAI47_15175	0.82	-0.5
3,201,082	-		IAI47_15175	0.82	+1.3
3,201,082	-		IAI47_15175	0.82	+4.0
3,201,082	-		IAI47_15175	0.82	+0.1
3,201,082	-		IAI47_15175	0.82	-1.3
3,201,082	-		IAI47_15175	0.82	-1.6
3,201,124	+		IAI47_15175	0.86	+2.3
3,201,124	+		IAI47_15175	0.86	-1.0
3,201,125	-		IAI47_15175	0.86	+3.2
3,201,125	-		IAI47_15175	0.86	+1.1
3,201,139	+		IAI47_15175	0.87	-0.2
3,201,139	+		IAI47_15175	0.87	+0.9
3,201,140	-		IAI47_15175	0.87	-1.1
3,201,140	-		IAI47_15175	0.87	-0.8
3,201,215	+				-0.8
3,201,215	+				-0.0
3,201,216	-				-0.2
3,201,216	-				-0.7
3,201,216	-				+0.1
3,201,238	+				+2.1
3,201,238	+				-3.2
3,201,238	+				+1.7
3,201,238	+				+1.0
3,201,238	+				-1.5
3,201,238	+				+0.7
3,201,238	+				-0.3
3,201,239	-				-0.1
3,201,239	-				-1.1
3,201,239	-				-0.2
3,201,269	+				+1.6
3,201,270	-				+0.9
3,201,270	-				-0.3
3,201,270	-				+0.6
3,201,276	-				-0.0
3,201,295	-				+0.9
3,201,298	+				+0.7
3,201,299	-				+1.4
3,201,299	-				-1.1
3,201,300	+				-1.5
3,201,301	-				+0.4
3,201,301	-				+1.5
3,201,316	-				-0.3
3,201,324	+				+0.5
3,201,325	-				-1.3
3,201,325	-				-1.2
3,201,343	+				-0.0
3,201,344	-				-0.1
3,201,350	+				-1.8
3,201,351	-				-1.4
3,201,368	+				-1.0
3,201,379	-				-1.0
3,201,428	+				-1.1
3,201,428	+				+1.5
3,201,429	-				-1.5
3,201,496	+				-0.9
3,201,496	+				+1.2
3,201,496	+				-1.3
3,201,496	+				-0.5
3,201,497	-				+0.2
3,201,497	-				-1.5
3,201,497	-				+1.2
3,201,497	-				+2.9
3,201,497	-				-1.0
3,201,497	-				+1.2
3,201,505	+				-1.8
3,201,505	+				+1.4
3,201,505	+				-1.1
3,201,506	-				+0.6
3,201,506	-				-0.3
3,201,506	-				-1.4
3,201,506	-				+1.5
3,201,510	+				-2.0
3,201,510	+				-2.1
3,201,510	+				+1.0
3,201,510	+				-0.2
3,201,510	+				+0.5
3,201,510	+				-0.7
3,201,510	+				+0.1
3,201,510	+				+0.3
3,201,510	+				+0.3
3,201,511	-				-1.3
3,201,511	-				-3.3
3,201,511	-				+0.6
3,201,511	-				-0.9
3,201,511	-				+1.5
3,201,511	-				-1.3
3,201,512	+				+1.3
3,201,512	+				-2.1
3,201,512	+				-1.1
3,201,512	+				+1.1
3,201,512	+				+0.5
3,201,513	-				+1.0
3,201,513	-				-0.6
3,201,513	-				-1.2
3,201,513	-				-3.6
3,201,513	-				-3.0
3,201,513	-				-2.1
3,201,554	+				-2.3
3,201,623	+		IAI47_15180	0.14	-0.5
3,201,623	+		IAI47_15180	0.14	-1.9
3,201,624	-		IAI47_15180	0.14	-1.5
3,201,624	-		IAI47_15180	0.14	-0.7
3,201,635	+		IAI47_15180	0.15	-0.9
3,201,635	+		IAI47_15180	0.15	-0.3
3,201,652	+		IAI47_15180	0.18	-0.3
3,201,652	+				-1.0
3,201,652	+		IAI47_15180	0.18	+0.9
3,201,652	+		IAI47_15180	0.18	+0.5
3,201,652	+		IAI47_15180	0.18	-1.4
3,201,652	+		IAI47_15180	0.18	-1.4
3,201,652	+		IAI47_15180	0.18	+1.0
3,201,652	+		IAI47_15180	0.18	-0.8
3,201,653	-		IAI47_15180	0.18	-0.7
3,201,653	-		IAI47_15180	0.18	+0.9
3,201,653	-		IAI47_15180	0.18	-0.5
3,201,653	-		IAI47_15180	0.18	-1.2
3,201,653	-		IAI47_15180	0.18	-1.6
3,201,653	-		IAI47_15180	0.18	+1.0
3,201,655	-		IAI47_15180	0.18	-1.3
3,201,691	+		IAI47_15180	0.23	-0.7
3,201,727	-		IAI47_15180	0.28	+1.7
3,201,730	+		IAI47_15180	0.28	-2.0
3,201,730	+		IAI47_15180	0.28	-2.9
3,201,730	+		IAI47_15180	0.28	-0.1
3,201,730	+		IAI47_15180	0.28	-0.4
3,201,731	-		IAI47_15180	0.28	-0.1
3,201,731	-		IAI47_15180	0.28	-3.4
3,201,731	-		IAI47_15180	0.28	+0.7
3,201,741	+		IAI47_15180	0.30	-1.5
3,201,742	-		IAI47_15180	0.30	+0.4
3,201,805	+		IAI47_15180	0.38	-1.2
3,201,805	+		IAI47_15180	0.38	-1.9
3,201,806	-		IAI47_15180	0.38	-0.6
3,201,806	-		IAI47_15180	0.38	-1.5
3,201,806	-		IAI47_15180	0.38	-0.9
3,201,888	+		IAI47_15180	0.49	+0.4
3,201,889	-		IAI47_15180	0.49	-1.1
3,201,898	+		IAI47_15180	0.51	+1.0
3,201,898	+		IAI47_15180	0.51	-2.7
3,201,898	+		IAI47_15180	0.51	+1.0
3,201,899	-		IAI47_15180	0.51	-0.1
3,201,899	-		IAI47_15180	0.51	+0.9
3,201,899	-		IAI47_15180	0.51	-1.4
3,201,910	+		IAI47_15180	0.52	+0.2
3,201,910	+		IAI47_15180	0.52	-1.3
3,201,910	+		IAI47_15180	0.52	-1.8
3,201,910	+		IAI47_15180	0.52	-0.8
3,201,910	+		IAI47_15180	0.52	-1.5
3,201,910	+		IAI47_15180	0.52	-1.0
3,201,911	-		IAI47_15180	0.52	-0.5
3,201,933	+		IAI47_15180	0.55	-0.5
3,201,933	+		IAI47_15180	0.55	-1.1
3,201,933	+		IAI47_15180	0.55	+1.1
3,201,933	+		IAI47_15180	0.55	-0.7
3,201,933	+		IAI47_15180	0.55	-0.4
3,201,934	-		IAI47_15180	0.55	+1.4
3,201,934	-		IAI47_15180	0.55	+0.1
3,201,934	-		IAI47_15180	0.55	+0.4
3,201,934	-		IAI47_15180	0.55	-0.5
3,201,949	+		IAI47_15180	0.57	-0.6
3,201,949	+		IAI47_15180	0.57	-0.2
3,201,949	+		IAI47_15180	0.57	+0.4
3,201,949	+		IAI47_15180	0.57	-1.4
3,201,950	-		IAI47_15180	0.58	+0.1
3,201,950	-		IAI47_15180	0.58	-1.4
3,201,950	-		IAI47_15180	0.58	-2.1
3,201,967	+		IAI47_15180	0.60	-1.0
3,201,967	+		IAI47_15180	0.60	-0.2
3,201,967	+		IAI47_15180	0.60	+2.0
3,201,967	+		IAI47_15180	0.60	-2.0
3,201,967	+		IAI47_15180	0.60	-0.3
3,201,967	+		IAI47_15180	0.60	+0.5
3,201,967	+		IAI47_15180	0.60	+0.4
3,201,967	+		IAI47_15180	0.60	-1.9
3,201,967	+		IAI47_15180	0.60	+0.9
3,201,968	-		IAI47_15180	0.60	+0.5
3,201,968	-		IAI47_15180	0.60	+1.3
3,201,969	+		IAI47_15180	0.60	+0.5
3,201,969	+		IAI47_15180	0.60	+0.1
3,201,969	+		IAI47_15180	0.60	-0.7
3,201,969	+		IAI47_15180	0.60	+0.3
3,201,969	+		IAI47_15180	0.60	-0.6
3,201,970	-		IAI47_15180	0.60	+1.1
3,201,970	-		IAI47_15180	0.60	+0.9
3,201,970	-		IAI47_15180	0.60	-0.8
3,201,970	-		IAI47_15180	0.60	-0.1
3,201,984	+		IAI47_15180	0.62	-0.9
3,201,984	+		IAI47_15180	0.62	-3.0
3,201,988	+		IAI47_15180	0.63	-0.7
3,201,988	+		IAI47_15180	0.63	-1.5
3,201,988	+		IAI47_15180	0.63	-0.3
3,201,988	+		IAI47_15180	0.63	+0.1
3,201,989	-		IAI47_15180	0.63	+0.8
3,201,989	-		IAI47_15180	0.63	-1.6
3,201,989	-		IAI47_15180	0.63	-1.1
3,201,989	-		IAI47_15180	0.63	-1.5
3,201,989	-		IAI47_15180	0.63	+0.4
3,201,989	-		IAI47_15180	0.63	-1.0
3,201,989	-		IAI47_15180	0.63	-0.4
3,201,989	-		IAI47_15180	0.63	+0.1
3,201,989	-		IAI47_15180	0.63	-0.5
3,201,989	-		IAI47_15180	0.63	-0.9
3,202,008	+		IAI47_15180	0.65	+0.2
3,202,008	+		IAI47_15180	0.65	+1.1
3,202,009	-		IAI47_15180	0.65	+1.3
3,202,009	-		IAI47_15180	0.65	-1.5
3,202,039	+		IAI47_15180	0.69	-0.8
3,202,039	+		IAI47_15180	0.69	-1.6
3,202,039	+		IAI47_15180	0.69	-1.7
3,202,040	-		IAI47_15180	0.70	+0.4
3,202,040	-		IAI47_15180	0.70	+0.3
3,202,123	+		IAI47_15180	0.81	+0.5
3,202,130	-		IAI47_15180	0.82	+0.1
3,202,130	-		IAI47_15180	0.82	-1.8
3,202,130	-		IAI47_15180	0.82	+0.5
3,202,130	-		IAI47_15180	0.82	-0.5
3,202,141	+		IAI47_15180	0.83	-0.3
3,202,141	+		IAI47_15180	0.83	+0.3
3,202,142	-		IAI47_15180	0.83	+1.3
3,202,142	-				+0.3
3,202,142	-		IAI47_15180	0.83	-1.6
3,202,176	+		IAI47_15180	0.88	+0.9
3,202,176	+		IAI47_15180	0.88	-3.4
3,202,177	-		IAI47_15180	0.88	-1.8
3,202,180	+		IAI47_15180	0.88	+0.6
3,202,180	+		IAI47_15180	0.88	+0.1
3,202,180	+		IAI47_15180	0.88	+0.0
3,202,180	+		IAI47_15180	0.88	-0.7
3,202,180	+		IAI47_15180	0.88	+0.1
3,202,180	+		IAI47_15180	0.88	-0.7
3,202,180	+		IAI47_15180	0.88	-1.5
3,202,180	+		IAI47_15180	0.88	+1.0
3,202,181	-		IAI47_15180	0.88	+0.7
3,202,181	-		IAI47_15180	0.88	+0.6
3,202,181	-		IAI47_15180	0.88	-0.8
3,202,212	-				-0.7
3,202,265	-				-0.4