Strain Fitness in Pantoea sp. MT58 around IAI47_14580

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,072,949	+				+0.6
3,072,973	+				+0.8
3,072,973	+				+0.6
3,072,974	-				+1.1
3,073,010	-				-1.0
3,073,059	+				-0.6
3,073,086	+				-1.7
3,073,086	+				-2.2
3,073,086	+				-1.7
3,073,086	+				-0.5
3,073,086	+				+0.6
3,073,087	-				-0.6
3,073,087	-				+1.1
3,073,087	-				-0.5
3,073,087	-				+0.5
3,073,087	-				-1.5
3,073,088	+				-1.5
3,073,088	+				+0.1
3,073,089	-				-1.5
3,073,089	-				+0.1
3,073,158	-		IAI47_14575	0.15	+0.6
3,073,193	-		IAI47_14575	0.19	+1.2
3,073,212	-		IAI47_14575	0.22	-2.0
3,073,246	+		IAI47_14575	0.26	-2.7
3,073,246	+		IAI47_14575	0.26	-1.0
3,073,246	+		IAI47_14575	0.26	-1.4
3,073,247	-		IAI47_14575	0.26	+0.4
3,073,247	-		IAI47_14575	0.26	+0.4
3,073,247	-		IAI47_14575	0.26	-1.0
3,073,247	-		IAI47_14575	0.26	+0.6
3,073,247	-		IAI47_14575	0.26	-0.6
3,073,250	+		IAI47_14575	0.26	-1.7
3,073,250	+		IAI47_14575	0.26	-0.9
3,073,250	+		IAI47_14575	0.26	-0.7
3,073,250	+		IAI47_14575	0.26	+3.5
3,073,250	+		IAI47_14575	0.26	-1.5
3,073,250	+		IAI47_14575	0.26	+0.0
3,073,250	+		IAI47_14575	0.26	-0.4
3,073,250	+		IAI47_14575	0.26	+0.4
3,073,250	+		IAI47_14575	0.26	-2.0
3,073,250	+		IAI47_14575	0.26	+0.5
3,073,250	+		IAI47_14575	0.26	+0.3
3,073,250	+		IAI47_14575	0.26	+2.8
3,073,250	+		IAI47_14575	0.26	+0.7
3,073,251	-		IAI47_14575	0.26	+0.7
3,073,251	-		IAI47_14575	0.26	-0.3
3,073,251	-		IAI47_14575	0.26	-0.2
3,073,251	-		IAI47_14575	0.26	+0.4
3,073,251	-		IAI47_14575	0.26	+1.3
3,073,251	-		IAI47_14575	0.26	+0.3
3,073,251	-		IAI47_14575	0.26	+1.9
3,073,251	-		IAI47_14575	0.26	+0.9
3,073,251	-		IAI47_14575	0.26	+1.4
3,073,251	-		IAI47_14575	0.26	+1.8
3,073,251	-		IAI47_14575	0.26	+3.0
3,073,251	-		IAI47_14575	0.26	+0.5
3,073,299	+		IAI47_14575	0.32	+2.4
3,073,331	+		IAI47_14575	0.35	+0.1
3,073,416	+		IAI47_14575	0.45	-1.6
3,073,467	+		IAI47_14575	0.51	+1.1
3,073,512	+		IAI47_14575	0.56	+1.4
3,073,513	-		IAI47_14575	0.56	+2.1
3,073,546	+		IAI47_14575	0.60	-1.2
3,073,587	+		IAI47_14575	0.65	-2.0
3,073,588	-		IAI47_14575	0.65	-2.0
3,073,599	+		IAI47_14575	0.66	-1.7
3,073,599	+		IAI47_14575	0.66	-1.3
3,073,599	+		IAI47_14575	0.66	+0.9
3,073,599	+		IAI47_14575	0.66	-0.2
3,073,599	+		IAI47_14575	0.66	-1.2
3,073,599	+		IAI47_14575	0.66	+1.5
3,073,600	-		IAI47_14575	0.67	-0.2
3,073,600	-		IAI47_14575	0.67	-0.0
3,073,600	-		IAI47_14575	0.67	+2.7
3,073,600	-		IAI47_14575	0.67	-1.1
3,073,600	-		IAI47_14575	0.67	-0.8
3,073,600	-		IAI47_14575	0.67	+1.5
3,073,600	-		IAI47_14575	0.67	+1.7
3,073,600	-		IAI47_14575	0.67	-0.5
3,073,603	+		IAI47_14575	0.67	+0.7
3,073,603	+		IAI47_14575	0.67	-0.4
3,073,603	+		IAI47_14575	0.67	-0.6
3,073,603	+		IAI47_14575	0.67	-0.1
3,073,603	+		IAI47_14575	0.67	+0.3
3,073,604	-		IAI47_14575	0.67	+0.5
3,073,604	-		IAI47_14575	0.67	-1.3
3,073,604	-		IAI47_14575	0.67	+0.1
3,073,604	-		IAI47_14575	0.67	-1.5
3,073,613	+		IAI47_14575	0.68	+0.7
3,073,613	+		IAI47_14575	0.68	+0.2
3,073,613	+		IAI47_14575	0.68	-0.0
3,073,613	+		IAI47_14575	0.68	-0.4
3,073,614	-		IAI47_14575	0.68	-1.4
3,073,614	-		IAI47_14575	0.68	-0.7
3,073,625	+		IAI47_14575	0.69	-0.4
3,073,626	-		IAI47_14575	0.70	-0.1
3,073,683	+		IAI47_14575	0.76	+1.2
3,073,683	+		IAI47_14575	0.76	-1.2
3,073,683	+		IAI47_14575	0.76	-0.6
3,073,763	+		IAI47_14575	0.85	+1.0
3,073,763	+		IAI47_14575	0.85	+1.4
3,073,764	-		IAI47_14575	0.86	-0.4
3,073,764	-		IAI47_14575	0.86	-0.9
3,073,764	-		IAI47_14575	0.86	+0.8
3,073,771	-		IAI47_14575	0.86	-0.7
3,073,771	-		IAI47_14575	0.86	-0.6
3,073,771	-		IAI47_14575	0.86	+0.9
3,073,771	-		IAI47_14575	0.86	-0.9
3,073,771	-		IAI47_14575	0.86	-0.5
3,073,771	-		IAI47_14575	0.86	-2.8
3,073,777	+		IAI47_14575	0.87	+1.7
3,073,778	-		IAI47_14575	0.87	+0.1
3,073,820	+				-2.1
3,073,821	-				-0.5
3,073,821	-				-0.3
3,073,821	-				-1.3
3,073,917	-				-1.5
3,073,928	+				-1.0
3,073,939	+				+2.4
3,073,939	+				-0.8
3,073,940	-				+0.3
3,073,940	-				+1.0
3,073,948	+				-0.3
3,073,948	+				-0.4
3,073,949	-				+0.3
3,073,949	-				-1.0
3,073,949	-				+0.4
3,073,971	+				+0.8
3,073,971	+				+0.6
3,073,971	+				+0.5
3,073,971	+				+0.3
3,073,972	-				+1.4
3,073,972	-				+1.2
3,074,046	-				+0.1
3,074,072	+		IAI47_14580	0.10	-0.9
3,074,072	+		IAI47_14580	0.10	+0.3
3,074,072	+		IAI47_14580	0.10	+2.5
3,074,073	-		IAI47_14580	0.10	+0.5
3,074,121	-		IAI47_14580	0.14	-0.4
3,074,121	-		IAI47_14580	0.14	-1.1
3,074,134	+		IAI47_14580	0.15	+0.4
3,074,134	+		IAI47_14580	0.15	-2.3
3,074,134	+		IAI47_14580	0.15	+0.0
3,074,134	+		IAI47_14580	0.15	-1.0
3,074,135	-		IAI47_14580	0.15	-0.7
3,074,180	+		IAI47_14580	0.19	-1.1
3,074,180	+		IAI47_14580	0.19	-0.3
3,074,180	+		IAI47_14580	0.19	+0.8
3,074,181	-		IAI47_14580	0.19	-0.2
3,074,181	-		IAI47_14580	0.19	+1.2
3,074,187	+		IAI47_14580	0.19	+0.3
3,074,187	+		IAI47_14580	0.19	+1.1
3,074,188	-		IAI47_14580	0.19	-1.6
3,074,208	+		IAI47_14580	0.21	-1.6
3,074,208	+		IAI47_14580	0.21	+1.4
3,074,209	-		IAI47_14580	0.21	-0.9
3,074,209	-		IAI47_14580	0.21	-1.3
3,074,326	+		IAI47_14580	0.30	-0.2
3,074,326	+		IAI47_14580	0.30	-1.0
3,074,327	-		IAI47_14580	0.30	-0.2
3,074,327	-		IAI47_14580	0.30	+0.6
3,074,343	-		IAI47_14580	0.31	+1.3
3,074,363	+		IAI47_14580	0.33	+1.1
3,074,397	-		IAI47_14580	0.36	-1.9
3,074,403	+		IAI47_14580	0.36	+2.4
3,074,404	-		IAI47_14580	0.36	-1.3
3,074,533	+		IAI47_14580	0.46	-0.2
3,074,533	+		IAI47_14580	0.46	+0.7
3,074,533	+		IAI47_14580	0.46	+0.9
3,074,533	+		IAI47_14580	0.46	+0.3
3,074,533	+		IAI47_14580	0.46	+1.2
3,074,534	-		IAI47_14580	0.46	+0.3
3,074,579	+		IAI47_14580	0.50	+1.1
3,074,580	-		IAI47_14580	0.50	-1.3
3,074,580	-		IAI47_14580	0.50	-1.5
3,074,580	-		IAI47_14580	0.50	+1.3
3,074,580	-		IAI47_14580	0.50	+2.8
3,074,592	-		IAI47_14580	0.51	-0.6
3,074,613	+		IAI47_14580	0.52	+0.5
3,074,613	+		IAI47_14580	0.52	-1.7
3,074,618	+		IAI47_14580	0.53	-0.6
3,074,620	+		IAI47_14580	0.53	+0.6
3,074,620	+		IAI47_14580	0.53	-1.1
3,074,620	+		IAI47_14580	0.53	+2.7
3,074,620	+		IAI47_14580	0.53	+0.4
3,074,620	+		IAI47_14580	0.53	-1.4
3,074,621	-		IAI47_14580	0.53	+0.6
3,074,621	-		IAI47_14580	0.53	-0.8
3,074,640	+		IAI47_14580	0.55	-0.9
3,074,640	+		IAI47_14580	0.55	-0.2
3,074,640	+		IAI47_14580	0.55	+1.3
3,074,641	-		IAI47_14580	0.55	-1.8
3,074,641	-		IAI47_14580	0.55	-0.2
3,074,652	-		IAI47_14580	0.55	-0.2
3,074,654	+		IAI47_14580	0.56	+0.7
3,074,654	+		IAI47_14580	0.56	+0.6
3,074,654	+		IAI47_14580	0.56	-0.6
3,074,655	-		IAI47_14580	0.56	-0.7
3,074,655	-		IAI47_14580	0.56	-2.0
3,074,655	-		IAI47_14580	0.56	-1.0
3,074,661	+		IAI47_14580	0.56	+0.6
3,074,661	+		IAI47_14580	0.56	+0.3
3,074,661	+		IAI47_14580	0.56	-1.6
3,074,661	+		IAI47_14580	0.56	-1.7
3,074,661	+		IAI47_14580	0.56	-0.5
3,074,661	+		IAI47_14580	0.56	-0.3
3,074,661	+		IAI47_14580	0.56	-0.9
3,074,662	-		IAI47_14580	0.56	-1.7
3,074,662	-		IAI47_14580	0.56	-0.9
3,074,666	+		IAI47_14580	0.57	-0.6
3,074,667	-		IAI47_14580	0.57	-3.0
3,074,732	+		IAI47_14580	0.62	-1.2
3,074,732	+		IAI47_14580	0.62	+0.4
3,074,736	+		IAI47_14580	0.62	+1.6
3,074,736	+		IAI47_14580	0.62	-0.2
3,074,736	+		IAI47_14580	0.62	-1.2
3,074,737	-		IAI47_14580	0.62	+0.5
3,074,737	-		IAI47_14580	0.62	-1.4
3,074,737	-		IAI47_14580	0.62	-0.9
3,074,737	-		IAI47_14580	0.62	-1.7
3,074,737	-		IAI47_14580	0.62	+0.2
3,074,737	-		IAI47_14580	0.62	+0.0
3,074,737	-		IAI47_14580	0.62	-1.1
3,074,737	-		IAI47_14580	0.62	-0.7
3,074,737	-		IAI47_14580	0.62	+0.7
3,074,740	+		IAI47_14580	0.62	-1.1
3,074,740	+		IAI47_14580	0.62	+0.1
3,074,740	+		IAI47_14580	0.62	+1.1
3,074,740	+		IAI47_14580	0.62	+0.0
3,074,740	+		IAI47_14580	0.62	-1.5
3,074,741	-		IAI47_14580	0.62	-1.0
3,074,741	-		IAI47_14580	0.62	+1.3
3,074,741	-		IAI47_14580	0.62	+0.1
3,074,775	+		IAI47_14580	0.65	-0.4
3,074,792	+		IAI47_14580	0.66	+0.4
3,074,803	-		IAI47_14580	0.67	+0.5
3,074,832	-		IAI47_14580	0.69	+0.0
3,074,832	-		IAI47_14580	0.69	-0.3
3,074,832	-		IAI47_14580	0.69	+0.8
3,074,832	-		IAI47_14580	0.69	-1.4
3,074,832	-		IAI47_14580	0.69	+1.3
3,074,864	+		IAI47_14580	0.72	+1.1
3,074,864	+		IAI47_14580	0.72	-1.8
3,074,865	-		IAI47_14580	0.72	+0.1
3,074,865	-		IAI47_14580	0.72	-0.5
3,074,865	-		IAI47_14580	0.72	+0.0
3,074,865	-		IAI47_14580	0.72	+0.7
3,074,865	-		IAI47_14580	0.72	-0.0
3,074,865	-		IAI47_14580	0.72	+0.5
3,074,865	-		IAI47_14580	0.72	+0.2
3,074,866	+		IAI47_14580	0.72	-0.7
3,074,866	+		IAI47_14580	0.72	+1.1
3,074,866	+		IAI47_14580	0.72	-0.7
3,074,866	+		IAI47_14580	0.72	+1.5
3,074,866	+		IAI47_14580	0.72	+0.6
3,074,866	+		IAI47_14580	0.72	-0.1
3,074,867	-		IAI47_14580	0.72	-0.9
3,074,867	-		IAI47_14580	0.72	+0.1
3,074,867	-		IAI47_14580	0.72	-1.4
3,074,867	-		IAI47_14580	0.72	-0.7
3,074,867	-		IAI47_14580	0.72	-1.0
3,074,867	-		IAI47_14580	0.72	+1.5
3,074,867	-		IAI47_14580	0.72	+1.3
3,074,867	-		IAI47_14580	0.72	+2.3
3,074,867	-		IAI47_14580	0.72	-1.7
3,074,867	-		IAI47_14580	0.72	-0.2
3,074,873	-		IAI47_14580	0.73	-2.4
3,074,873	-		IAI47_14580	0.73	-0.2
3,074,873	-		IAI47_14580	0.73	+0.5
3,074,873	-		IAI47_14580	0.73	-1.6
3,074,873	-		IAI47_14580	0.73	+0.1
3,074,894	+		IAI47_14580	0.74	-0.4
3,074,895	-		IAI47_14580	0.74	+0.4
3,074,975	-		IAI47_14580	0.81	-0.8
3,074,975	-		IAI47_14580	0.81	+1.0
3,074,975	-		IAI47_14580	0.81	+2.7
3,074,989	-		IAI47_14580	0.82	-0.1
3,074,989	-		IAI47_14580	0.82	-0.6
3,075,064	+		IAI47_14580	0.87	+0.2
3,075,064	+		IAI47_14580	0.87	-1.0
3,075,064	+		IAI47_14580	0.87	-1.0
3,075,092	+		IAI47_14580	0.90	+0.2
3,075,093	-		IAI47_14580	0.90	-0.3
3,075,093	-		IAI47_14580	0.90	+1.8
3,075,093	-		IAI47_14580	0.90	+3.2
3,075,093	-		IAI47_14580	0.90	-0.4
3,075,093	-		IAI47_14580	0.90	-1.0
3,075,093	-		IAI47_14580	0.90	-1.2
3,075,122	+				+1.4
3,075,123	-				+0.3
3,075,123	-				+0.8
3,075,177	+				+1.0
3,075,177	+				+1.6
3,075,206	+				-0.1
3,075,206	+				+1.3
3,075,206	+				-0.3
3,075,206	+				-1.8
3,075,206	+				-0.3
3,075,206	+				-0.1
3,075,207	-				+0.1
3,075,207	-				-2.1
3,075,207	-				-1.5
3,075,207	-				-1.0
3,075,210	+				-2.3
3,075,210	+				+1.7
3,075,211	-				-0.2
3,075,218	+				+0.1
3,075,219	-				-0.1
3,075,228	+				-1.1
3,075,228	+				+0.7
3,075,229	-				+0.7
3,075,247	-				-0.6
3,075,247	-				+1.1
3,075,247	-				+1.4
3,075,260	+				-1.3
3,075,260	+				-0.2
3,075,260	+				+1.5
3,075,261	-				-0.4
3,075,261	-				+2.0
3,075,261	-				+1.8
3,075,261	-				-0.0
3,075,261	-				+0.3
3,075,294	+		IAI47_14585	0.10	-2.3
3,075,294	+		IAI47_14585	0.10	-1.8
3,075,294	+		IAI47_14585	0.10	-1.8
3,075,294	+		IAI47_14585	0.10	+0.1
3,075,295	-		IAI47_14585	0.11	-1.6
3,075,296	-		IAI47_14585	0.11	+0.7
3,075,332	-		IAI47_14585	0.22	+1.5
3,075,353	+		IAI47_14585	0.28	-0.7
3,075,353	+		IAI47_14585	0.28	-0.9
3,075,354	-		IAI47_14585	0.28	+0.5
3,075,363	+		IAI47_14585	0.31	-0.8
3,075,363	+		IAI47_14585	0.31	+1.3
3,075,363	+		IAI47_14585	0.31	-1.1
3,075,363	+		IAI47_14585	0.31	-0.0
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