Strain Fitness in Pantoea sp. MT58 around IAI47_12895

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,723,088	+		IAI47_12890	0.41	-0.6
2,723,089	-		IAI47_12890	0.41	-1.6
2,723,106	+		IAI47_12890	0.43	-1.5
2,723,147	-		IAI47_12890	0.46	+0.4
2,723,147	-		IAI47_12890	0.46	-0.3
2,723,149	+		IAI47_12890	0.46	-0.3
2,723,149	+		IAI47_12890	0.46	-1.4
2,723,150	-		IAI47_12890	0.46	+0.7
2,723,164	+		IAI47_12890	0.48	-2.0
2,723,298	-		IAI47_12890	0.59	+0.1
2,723,325	-		IAI47_12890	0.62	-1.3
2,723,325	-		IAI47_12890	0.62	-0.2
2,723,325	-		IAI47_12890	0.62	-0.3
2,723,341	+		IAI47_12890	0.63	+1.2
2,723,342	-		IAI47_12890	0.63	+1.2
2,723,349	+		IAI47_12890	0.64	-1.3
2,723,349	+		IAI47_12890	0.64	+0.7
2,723,349	+		IAI47_12890	0.64	+0.4
2,723,349	+		IAI47_12890	0.64	-0.4
2,723,349	+		IAI47_12890	0.64	-0.8
2,723,350	-		IAI47_12890	0.64	+1.2
2,723,350	-		IAI47_12890	0.64	+0.5
2,723,352	+		IAI47_12890	0.64	+3.6
2,723,353	-		IAI47_12890	0.64	+1.0
2,723,353	-		IAI47_12890	0.64	+1.4
2,723,353	-		IAI47_12890	0.64	-0.5
2,723,364	+		IAI47_12890	0.65	+0.6
2,723,364	+		IAI47_12890	0.65	+2.3
2,723,364	+		IAI47_12890	0.65	+0.8
2,723,365	-		IAI47_12890	0.65	+0.5
2,723,365	-		IAI47_12890	0.65	+1.4
2,723,365	-		IAI47_12890	0.65	-0.6
2,723,365	-		IAI47_12890	0.65	+0.6
2,723,365	-		IAI47_12890	0.65	+0.8
2,723,365	-		IAI47_12890	0.65	-1.9
2,723,544	+		IAI47_12890	0.81	+0.5
2,723,545	-		IAI47_12890	0.81	+2.8
2,723,545	-		IAI47_12890	0.81	+1.3
2,723,545	-		IAI47_12890	0.81	+0.5
2,723,547	+		IAI47_12890	0.81	+0.4
2,723,547	+		IAI47_12890	0.81	+1.7
2,723,547	+		IAI47_12890	0.81	+2.1
2,723,547	+		IAI47_12890	0.81	-0.2
2,723,547	+		IAI47_12890	0.81	+1.2
2,723,547	+		IAI47_12890	0.81	+1.7
2,723,547	+		IAI47_12890	0.81	-2.9
2,723,548	-		IAI47_12890	0.81	-1.5
2,723,548	-		IAI47_12890	0.81	-0.2
2,723,565	+		IAI47_12890	0.82	+0.3
2,723,566	-		IAI47_12890	0.82	-0.5
2,723,577	-		IAI47_12890	0.83	+1.2
2,723,608	+		IAI47_12890	0.86	-1.1
2,723,616	+		IAI47_12890	0.87	-1.7
2,723,617	-		IAI47_12890	0.87	+1.4
2,723,617	-		IAI47_12890	0.87	-0.9
2,723,617	-		IAI47_12890	0.87	+0.1
2,723,617	-		IAI47_12890	0.87	-0.9
2,723,617	-		IAI47_12890	0.87	+3.0
2,723,617	-		IAI47_12890	0.87	-1.7
2,723,620	-		IAI47_12890	0.87	+0.4
2,723,630	+		IAI47_12890	0.88	-0.5
2,723,630	+		IAI47_12890	0.88	+0.1
2,723,630	+		IAI47_12890	0.88	-0.2
2,723,630	+		IAI47_12890	0.88	+0.7
2,723,630	+		IAI47_12890	0.88	-0.9
2,723,630	+		IAI47_12890	0.88	-0.3
2,723,631	-		IAI47_12890	0.88	+0.1
2,723,631	-		IAI47_12890	0.88	-1.4
2,723,631	-		IAI47_12890	0.88	+0.2
2,723,631	-		IAI47_12890	0.88	+0.2
2,723,631	-		IAI47_12890	0.88	-0.7
2,723,633	+		IAI47_12890	0.88	-0.2
2,723,633	+		IAI47_12890	0.88	+1.2
2,723,633	+		IAI47_12890	0.88	+0.3
2,723,634	-		IAI47_12890	0.88	+0.7
2,723,634	-		IAI47_12890	0.88	+0.6
2,723,634	-		IAI47_12890	0.88	-1.2
2,723,634	-		IAI47_12890	0.88	+0.5
2,723,634	-		IAI47_12890	0.88	-0.1
2,723,634	-		IAI47_12890	0.88	+0.6
2,723,634	-		IAI47_12890	0.88	+1.1
2,723,634	-		IAI47_12890	0.88	+0.5
2,723,634	-		IAI47_12890	0.88	+0.9
2,723,635	+		IAI47_12890	0.88	+2.0
2,723,635	+		IAI47_12890	0.88	+0.3
2,723,635	+		IAI47_12890	0.88	+3.0
2,723,636	-		IAI47_12890	0.89	+1.3
2,723,636	-		IAI47_12890	0.89	-0.1
2,723,658	-				-0.0
2,723,658	-				+0.5
2,723,689	+				+0.3
2,723,689	+				-1.0
2,723,690	-				+0.7
2,723,690	-				-0.3
2,723,717	+				+1.0
2,723,718	-				-1.7
2,723,767	+				-0.4
2,723,767	+				-0.7
2,723,768	-				-0.9
2,723,774	+				-0.2
2,723,817	+				+1.6
2,723,817	+				-1.1
2,723,847	-				+0.8
2,723,847	-				-0.1
2,723,877	+				-1.5
2,723,886	-				-0.2
2,723,900	+				-0.6
2,723,991	+				-0.6
2,723,991	+				-1.6
2,724,016	+				+1.6
2,724,017	-				-0.6
2,724,023	+				-1.0
2,724,024	-				+0.8
2,724,044	-				-0.5
2,724,070	+				+0.6
2,724,070	+				-1.0
2,724,070	+				+1.2
2,724,070	+				-0.7
2,724,071	-				+1.8
2,725,494	+				-0.7
2,725,522	+				-0.1
2,725,522	+				+1.3
2,725,522	+				+1.2
2,725,522	+				+1.3
2,725,523	-				+1.6
2,725,539	+				+1.0
2,725,539	+				+1.3
2,725,539	+				-0.9
2,725,540	-				+0.2
2,725,540	-				-0.2
2,725,540	-				+0.8
2,725,568	+				+0.5
2,725,568	+				+0.0
2,725,569	-				-0.7
2,725,569	-				+1.1
2,725,569	-				-1.0
2,725,571	+				-0.0
2,725,572	-				+0.3
2,725,572	-				+0.2
2,725,619	+		IAI47_12900	0.11	+3.5
2,725,620	-		IAI47_12900	0.11	-2.2
2,725,620	-		IAI47_12900	0.11	-0.5
2,725,620	-		IAI47_12900	0.11	+0.2
2,725,620	-		IAI47_12900	0.11	+0.3
2,725,644	-		IAI47_12900	0.13	+0.0
2,725,649	+		IAI47_12900	0.13	+1.1
2,725,650	-		IAI47_12900	0.13	+2.7
2,725,650	-		IAI47_12900	0.13	-1.7
2,725,683	+		IAI47_12900	0.16	+0.6
2,725,684	-		IAI47_12900	0.16	+0.1
2,725,719	-		IAI47_12900	0.18	-0.2
2,725,719	-		IAI47_12900	0.18	+0.4
2,725,719	-		IAI47_12900	0.18	+2.1
2,725,719	-		IAI47_12900	0.18	+2.8
2,725,719	-		IAI47_12900	0.18	-0.2
2,725,755	+		IAI47_12900	0.21	-1.2
2,725,755	+		IAI47_12900	0.21	+1.8
2,725,766	+		IAI47_12900	0.22	-0.5
2,725,767	-		IAI47_12900	0.22	-0.2
2,725,767	-		IAI47_12900	0.22	+0.5
2,725,767	-		IAI47_12900	0.22	+1.1
2,725,767	-		IAI47_12900	0.22	-0.2
2,725,767	-		IAI47_12900	0.22	-1.7
2,725,799	+		IAI47_12900	0.24	+0.7
2,725,946	+		IAI47_12900	0.35	-0.5
2,725,946	+		IAI47_12900	0.35	-2.0
2,725,946	+		IAI47_12900	0.35	-0.3
2,725,947	-		IAI47_12900	0.35	+0.4
2,725,947	-		IAI47_12900	0.35	-1.2
2,725,947	-		IAI47_12900	0.35	+1.0
2,725,947	-		IAI47_12900	0.35	-1.9
2,725,982	+		IAI47_12900	0.38	-2.0
2,725,982	+		IAI47_12900	0.38	+1.9
2,725,988	+		IAI47_12900	0.38	+0.1
2,725,989	-		IAI47_12900	0.39	-0.3
2,726,103	+		IAI47_12900	0.47	-2.4
2,726,103	+		IAI47_12900	0.47	-1.8
2,726,154	+		IAI47_12900	0.51	+1.2
2,726,154	+		IAI47_12900	0.51	-0.2
2,726,155	-		IAI47_12900	0.51	+0.8
2,726,175	+		IAI47_12900	0.52	+1.6
2,726,175	+		IAI47_12900	0.52	+2.8
2,726,202	+		IAI47_12900	0.54	+0.5
2,726,232	+		IAI47_12900	0.57	+1.1
2,726,262	-		IAI47_12900	0.59	-2.2
2,726,274	+		IAI47_12900	0.60	-0.7
2,726,274	+		IAI47_12900	0.60	+0.8
2,726,307	+		IAI47_12900	0.62	-2.1
2,726,307	+		IAI47_12900	0.62	+1.3
2,726,307	+		IAI47_12900	0.62	+0.1
2,726,308	-		IAI47_12900	0.62	+0.3
2,726,336	+		IAI47_12900	0.64	+0.5
2,726,337	-		IAI47_12900	0.64	-1.9
2,726,367	+		IAI47_12900	0.67	-0.4