Strain Fitness in Pantoea sp. MT58 around IAI47_12160

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,574,366	+		IAI47_12150	0.78	-2.3
2,574,367	-		IAI47_12150	0.78	+1.4
2,574,367	-		IAI47_12150	0.78	-2.0
2,574,367	-		IAI47_12150	0.78	-2.0
2,574,395	-		IAI47_12150	0.80	-1.3
2,574,395	-		IAI47_12150	0.80	-0.7
2,574,395	-		IAI47_12150	0.80	-0.5
2,574,463	+		IAI47_12150	0.85	-1.3
2,574,476	+		IAI47_12150	0.86	-1.7
2,574,508	+		IAI47_12150	0.89	-1.3
2,574,508	+		IAI47_12150	0.89	-2.6
2,574,523	+				-0.4
2,574,550	+				-1.0
2,574,551	-				-2.8
2,574,571	+				-0.0
2,574,572	-				+0.7
2,574,572	-				-0.4
2,574,572	-				-1.4
2,574,583	+				-2.6
2,574,583	+				-0.2
2,574,601	+				-0.3
2,574,663	+				+0.8
2,574,663	+				-1.4
2,574,688	+				-0.5
2,574,688	+				-0.9
2,574,688	+				-2.4
2,574,689	-				-0.9
2,574,689	-				-2.1
2,574,689	-				-1.3
2,574,689	-				-1.4
2,574,689	-				-1.0
2,574,689	-				-1.9
2,574,750	+		IAI47_12155	0.11	-3.2
2,574,751	-		IAI47_12155	0.12	-0.7
2,574,751	-		IAI47_12155	0.12	-0.6
2,574,767	+		IAI47_12155	0.14	-0.6
2,574,767	+		IAI47_12155	0.14	-0.3
2,574,768	-		IAI47_12155	0.14	-3.0
2,574,768	-		IAI47_12155	0.14	-0.7
2,574,773	+		IAI47_12155	0.15	-1.5
2,574,773	+		IAI47_12155	0.15	-2.0
2,574,773	+		IAI47_12155	0.15	-2.0
2,574,774	-		IAI47_12155	0.15	-2.4
2,574,774	-		IAI47_12155	0.15	+0.8
2,574,774	-		IAI47_12155	0.15	-2.4
2,574,777	+		IAI47_12155	0.15	-1.5
2,574,777	+		IAI47_12155	0.15	-1.1
2,574,778	-		IAI47_12155	0.16	-2.0
2,574,778	-		IAI47_12155	0.16	-2.2
2,574,778	-		IAI47_12155	0.16	-0.3
2,574,833	+		IAI47_12155	0.24	-2.0
2,574,833	+		IAI47_12155	0.24	-1.8
2,574,833	+		IAI47_12155	0.24	-1.2
2,574,834	-		IAI47_12155	0.24	-1.3
2,574,837	+		IAI47_12155	0.24	-1.9
2,574,837	+		IAI47_12155	0.24	-1.0
2,574,837	+		IAI47_12155	0.24	-1.2
2,574,837	+		IAI47_12155	0.24	-1.7
2,574,837	+		IAI47_12155	0.24	-0.7
2,574,838	-		IAI47_12155	0.24	-3.1
2,574,838	-		IAI47_12155	0.24	-0.3
2,574,838	-		IAI47_12155	0.24	-2.3
2,574,838	-		IAI47_12155	0.24	-0.6
2,574,932	-		IAI47_12155	0.38	-2.1
2,574,951	+		IAI47_12155	0.41	-1.4
2,574,952	-		IAI47_12155	0.41	-0.4
2,574,952	-		IAI47_12155	0.41	-0.3
2,574,952	-		IAI47_12155	0.41	-1.5
2,575,048	+		IAI47_12155	0.56	-0.6
2,575,152	+		IAI47_12155	0.71	-2.8
2,575,153	-		IAI47_12155	0.71	+0.8
2,575,188	+		IAI47_12155	0.76	-2.8
2,575,188	+		IAI47_12155	0.76	+0.4
2,575,189	-		IAI47_12155	0.76	-0.7
2,575,194	+		IAI47_12155	0.77	-0.5
2,575,195	-		IAI47_12155	0.77	-0.3
2,575,195	-		IAI47_12155	0.77	-3.4
2,575,203	+		IAI47_12155	0.79	-1.1
2,575,203	+		IAI47_12155	0.79	-2.0
2,575,204	-		IAI47_12155	0.79	-0.8
2,575,204	-		IAI47_12155	0.79	+1.2
2,575,204	-		IAI47_12155	0.79	-1.9
2,575,204	-		IAI47_12155	0.79	-1.7
2,575,219	+		IAI47_12155	0.81	+0.1
2,575,220	-		IAI47_12155	0.81	-1.4
2,575,220	-		IAI47_12155	0.81	-3.2
2,575,290	+				-0.4
2,575,290	+				-0.9
2,575,290	+				-2.1
2,575,291	-				+0.4
2,575,299	+				-0.1
2,575,299	+				-0.8
2,575,299	+				-1.8
2,575,299	+				-1.5
2,575,299	+				-0.6
2,575,300	-				-0.2
2,575,300	-				-1.8
2,575,300	-				-3.0
2,575,348	-				-2.1
2,575,348	-				-0.2
2,575,348	-				+1.3
2,575,430	+		IAI47_12160	0.17	-1.2
2,575,430	+		IAI47_12160	0.17	-2.7
2,575,431	-		IAI47_12160	0.18	-0.4
2,575,431	-		IAI47_12160	0.18	-1.4
2,575,496	+		IAI47_12160	0.34	-2.8
2,575,497	-		IAI47_12160	0.34	-1.2
2,575,532	+		IAI47_12160	0.42	-1.0
2,575,533	-		IAI47_12160	0.43	-1.2
2,575,533	-		IAI47_12160	0.43	-1.6
2,575,632	+		IAI47_12160	0.67	-1.4
2,575,632	+		IAI47_12160	0.67	-1.2
2,575,633	-		IAI47_12160	0.67	-0.5
2,575,633	-		IAI47_12160	0.67	-0.4
2,575,640	+		IAI47_12160	0.69	-1.7
2,575,640	+		IAI47_12160	0.69	-1.1
2,575,640	+		IAI47_12160	0.69	+2.3
2,575,640	+		IAI47_12160	0.69	-1.4
2,575,640	+		IAI47_12160	0.69	-2.2
2,575,640	+		IAI47_12160	0.69	-1.9
2,575,640	+		IAI47_12160	0.69	-0.8
2,575,641	-		IAI47_12160	0.69	+0.2
2,575,641	-		IAI47_12160	0.69	-0.1
2,575,641	-		IAI47_12160	0.69	-0.4
2,575,641	-		IAI47_12160	0.69	-0.7
2,575,641	-		IAI47_12160	0.69	-1.0
2,575,641	-		IAI47_12160	0.69	-0.8
2,575,641	-		IAI47_12160	0.69	-0.2
2,575,641	-		IAI47_12160	0.69	-1.2
2,575,641	-		IAI47_12160	0.69	-1.3
2,575,647	+		IAI47_12160	0.71	+0.7
2,575,647	+		IAI47_12160	0.71	+0.6
2,575,687	-		IAI47_12160	0.81	-1.5
2,575,702	+		IAI47_12160	0.84	-0.7
2,575,702	+		IAI47_12160	0.84	-0.1
2,575,703	-		IAI47_12160	0.85	+0.2
2,575,703	-		IAI47_12160	0.85	+0.2
2,575,749	+				-3.4
2,575,750	-				-1.4
2,575,768	+				-0.4
2,575,768	+				-0.4
2,575,768	+				-1.3
2,575,768	+				+1.2
2,575,768	+				+2.8
2,575,768	+				-2.4
2,575,768	+				-2.9
2,575,768	+				-1.3
2,575,768	+				-0.0
2,575,769	-				+0.1
2,575,769	-				+1.1
2,575,769	-				+0.7
2,575,779	+				+1.2
2,575,779	+				-1.3
2,575,779	+				-2.0
2,575,780	-				-3.7
2,575,780	-				-0.4
2,575,780	-				-2.2
2,575,834	+		IAI47_12165	0.16	+1.5
2,575,863	-		IAI47_12165	0.23	+0.4
2,575,877	+		IAI47_12165	0.27	-0.4
2,575,877	+		IAI47_12165	0.27	-1.0
2,575,878	-		IAI47_12165	0.27	-1.5
2,575,878	-		IAI47_12165	0.27	-0.3
2,575,878	-		IAI47_12165	0.27	+0.7
2,575,878	-		IAI47_12165	0.27	-0.0
2,575,881	+		IAI47_12165	0.28	+0.1
2,575,881	+		IAI47_12165	0.28	+2.2
2,575,881	+		IAI47_12165	0.28	+1.0
2,575,881	+		IAI47_12165	0.28	-0.7
2,575,881	+		IAI47_12165	0.28	+0.3
2,575,882	-		IAI47_12165	0.28	-2.5
2,575,882	-		IAI47_12165	0.28	-0.1
2,575,882	-		IAI47_12165	0.28	+2.1
2,575,882	-		IAI47_12165	0.28	-1.3
2,575,882	-		IAI47_12165	0.28	-1.1
2,575,882	-		IAI47_12165	0.28	-1.8
2,575,882	-		IAI47_12165	0.28	-1.4
2,575,928	+		IAI47_12165	0.39	+2.4
2,575,928	+		IAI47_12165	0.39	-3.2
2,575,929	-		IAI47_12165	0.39	-1.6
2,575,929	-		IAI47_12165	0.39	-2.0
2,576,068	+		IAI47_12165	0.73	-1.8
2,576,093	+		IAI47_12165	0.79	-1.9
2,576,093	+		IAI47_12165	0.79	-0.0
2,576,094	-		IAI47_12165	0.79	-2.2
2,576,094	-		IAI47_12165	0.79	-1.0
2,576,094	-		IAI47_12165	0.79	-2.6
2,576,193	+				-1.4
2,576,194	-				-0.2
2,576,217	+				-0.9
2,576,217	+				+1.2
2,576,217	+				-1.4
2,576,218	-				+0.0
2,576,249	+				+0.5
2,576,250	-				-1.5
2,576,257	+				-1.4
2,576,257	+				-2.2
2,576,257	+				-1.4
2,576,258	-				-0.2
2,576,258	-				-1.5
2,576,258	-				-2.1
2,576,268	+				+1.2
2,576,294	-				+0.8
2,576,300	+				-1.1
2,576,301	-				-2.1
2,576,301	-				+0.4
2,576,301	-				+0.3
2,576,301	-				-0.2
2,576,344	+				-3.1
2,576,344	+				-2.4
2,576,468	+		IAI47_12170	0.20	-3.2
2,576,553	+		IAI47_12170	0.33	-2.1
2,576,554	-		IAI47_12170	0.33	+0.2
2,576,554	-		IAI47_12170	0.33	-0.0
2,576,554	-		IAI47_12170	0.33	-0.3
2,576,590	+		IAI47_12170	0.39	-1.3
2,576,590	+		IAI47_12170	0.39	+1.8
2,576,590	+		IAI47_12170	0.39	+0.9
2,576,590	+		IAI47_12170	0.39	-2.5
2,576,590	+		IAI47_12170	0.39	-0.1
2,576,590	+		IAI47_12170	0.39	+0.5
2,576,591	-		IAI47_12170	0.39	-0.1
2,576,591	-		IAI47_12170	0.39	+0.4
2,576,591	-		IAI47_12170	0.39	-0.4
2,576,591	-		IAI47_12170	0.39	-2.2
2,576,591	-		IAI47_12170	0.39	+0.2
2,576,592	+		IAI47_12170	0.39	-0.5
2,576,592	+		IAI47_12170	0.39	-2.8
2,576,592	+		IAI47_12170	0.39	-1.4
2,576,592	+		IAI47_12170	0.39	-1.4
2,576,592	+		IAI47_12170	0.39	-0.6
2,576,593	-		IAI47_12170	0.39	+0.2
2,576,593	-		IAI47_12170	0.39	-0.9
2,576,593	-		IAI47_12170	0.39	-2.7
2,576,593	-		IAI47_12170	0.39	-2.9
2,576,600	+		IAI47_12170	0.40	+0.1
2,576,600	+				+0.5
2,576,600	+		IAI47_12170	0.40	-1.8
2,576,601	-		IAI47_12170	0.40	-1.2
2,576,601	-		IAI47_12170	0.40	-1.2
2,576,623	+		IAI47_12170	0.44	-1.8
2,576,623	+		IAI47_12170	0.44	-3.1
2,576,623	+		IAI47_12170	0.44	+0.3
2,576,623	+		IAI47_12170	0.44	+0.9
2,576,623	+		IAI47_12170	0.44	+1.8
2,576,623	+		IAI47_12170	0.44	-1.9
2,576,623	+		IAI47_12170	0.44	+0.0
2,576,624	-		IAI47_12170	0.44	-0.7
2,576,624	-		IAI47_12170	0.44	-0.8
2,576,624	-		IAI47_12170	0.44	-2.6
2,576,658	+		IAI47_12170	0.49	-0.2
2,576,658	+		IAI47_12170	0.49	+1.2
2,576,659	-		IAI47_12170	0.49	-2.1