Strain Fitness in Pantoea sp. MT58 around IAI47_11210

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,369,791	+		IAI47_11205	0.58	+2.0
2,369,880	-		IAI47_11205	0.62	-0.8
2,369,933	+		IAI47_11205	0.65	+3.0
2,369,934	-		IAI47_11205	0.65	+1.0
2,369,955	-		IAI47_11205	0.66	-1.5
2,370,033	+		IAI47_11205	0.70	+0.6
2,370,034	-		IAI47_11205	0.70	-1.5
2,370,036	+		IAI47_11205	0.70	+1.2
2,370,051	+		IAI47_11205	0.70	-1.2
2,370,051	+		IAI47_11205	0.70	-0.8
2,370,128	+		IAI47_11205	0.74	+0.6
2,370,129	-		IAI47_11205	0.74	+2.0
2,370,142	+		IAI47_11205	0.75	+1.0
2,370,169	+		IAI47_11205	0.76	-0.2
2,370,169	+		IAI47_11205	0.76	+1.5
2,370,226	+		IAI47_11205	0.79	-0.5
2,370,226	+		IAI47_11205	0.79	-0.1
2,370,226	+		IAI47_11205	0.79	-0.4
2,370,227	-		IAI47_11205	0.79	+1.4
2,370,228	+		IAI47_11205	0.79	+1.0
2,370,228	+		IAI47_11205	0.79	+0.6
2,370,267	+		IAI47_11205	0.81	-0.7
2,370,281	+		IAI47_11205	0.81	+2.4
2,370,281	+		IAI47_11205	0.81	+2.0
2,370,281	+		IAI47_11205	0.81	-1.8
2,370,282	-		IAI47_11205	0.81	+0.6
2,370,282	-		IAI47_11205	0.81	+0.6
2,370,282	-		IAI47_11205	0.81	-0.7
2,370,320	+		IAI47_11205	0.83	-0.8
2,370,320	+		IAI47_11205	0.83	+2.6
2,370,320	+		IAI47_11205	0.83	-1.5
2,370,320	+		IAI47_11205	0.83	+1.8
2,370,320	+		IAI47_11205	0.83	+1.3
2,370,381	+		IAI47_11205	0.86	+0.0
2,370,394	-		IAI47_11205	0.87	+2.3
2,370,409	-		IAI47_11205	0.87	-1.0
2,370,472	+				-0.5
2,370,473	-				+2.0
2,370,546	+				-0.4
2,370,546	+				-1.8
2,370,547	-				-1.0
2,370,547	-				-1.1
2,370,547	-				-1.5
2,370,557	+				-0.2
2,370,558	-				-1.1
2,370,565	+				+0.3
2,370,565	+				+0.1
2,370,565	+				-0.7
2,370,565	+				-1.5
2,370,566	-				-0.9
2,370,566	-				-0.5
2,370,566	-				-0.4
2,370,575	+				-0.3
2,370,576	-				+0.6
2,370,629	+				-1.2
2,370,672	+				-0.8
2,370,672	+				-1.5
2,370,673	-				-0.6
2,370,687	+				+0.5
2,370,687	+				-3.7
2,370,687	+				-1.1
2,370,687	+				-2.1
2,370,687	+				-2.1
2,370,688	-				-0.9
2,370,688	-				-2.2
2,370,688	-				+0.2
2,370,697	+				-2.2
2,370,697	+				-0.2
2,370,697	+				-0.3
2,370,697	+				-3.7
2,370,698	-				-0.6
2,370,698	-				-2.7
2,370,698	-				-3.2
2,370,698	-				+0.0
2,370,698	-				-0.1
2,370,715	+				+0.6
2,370,715	+				-0.7
2,370,716	-				-1.6
2,370,774	+		IAI47_11210	0.12	-2.1
2,370,774	+		IAI47_11210	0.12	-2.9
2,370,774	+		IAI47_11210	0.12	-4.5
2,370,775	-		IAI47_11210	0.12	+0.2
2,370,775	-		IAI47_11210	0.12	-1.1
2,370,775	-		IAI47_11210	0.12	+0.3
2,370,775	-		IAI47_11210	0.12	+0.1
2,370,838	-		IAI47_11210	0.21	-1.5
2,370,905	+		IAI47_11210	0.31	-0.3
2,370,905	+		IAI47_11210	0.31	-1.8
2,370,905	+		IAI47_11210	0.31	-2.0
2,370,906	-		IAI47_11210	0.31	-0.8
2,370,906	-		IAI47_11210	0.31	-0.2
2,370,906	-		IAI47_11210	0.31	+0.9
2,370,906	-		IAI47_11210	0.31	+0.9
2,370,906	-		IAI47_11210	0.31	-2.0
2,370,906	-		IAI47_11210	0.31	-2.8
2,370,920	+		IAI47_11210	0.33	-0.4
2,370,921	-		IAI47_11210	0.33	-1.2
2,371,052	+		IAI47_11210	0.52	-0.6
2,371,052	+		IAI47_11210	0.52	-0.7
2,371,052	+		IAI47_11210	0.52	-0.9
2,371,052	+		IAI47_11210	0.52	-2.7
2,371,053	-		IAI47_11210	0.52	-0.7
2,371,088	+		IAI47_11210	0.57	-1.7
2,371,088	+		IAI47_11210	0.57	-1.4
2,371,089	-		IAI47_11210	0.57	-0.6
2,371,149	+		IAI47_11210	0.66	-0.8
2,371,149	+		IAI47_11210	0.66	-0.9
2,371,150	-		IAI47_11210	0.66	-2.6
2,371,150	-		IAI47_11210	0.66	-0.8
2,371,237	+		IAI47_11210	0.79	-2.5
2,371,237	+		IAI47_11210	0.79	-0.2
2,371,237	+		IAI47_11210	0.79	-0.5
2,371,237	+		IAI47_11210	0.79	-1.0
2,371,238	-		IAI47_11210	0.79	+1.6
2,371,238	-		IAI47_11210	0.79	-0.7
2,371,238	-		IAI47_11210	0.79	-1.1
2,371,238	-		IAI47_11210	0.79	-1.5
2,371,238	-		IAI47_11210	0.79	-2.3
2,371,248	+		IAI47_11210	0.80	-0.7
2,371,248	+		IAI47_11210	0.80	-1.7
2,371,249	-		IAI47_11210	0.80	+0.5
2,371,249	-		IAI47_11210	0.80	-2.6
2,371,249	-		IAI47_11210	0.80	-1.2
2,371,254	+		IAI47_11210	0.81	-0.7
2,371,254	+		IAI47_11210	0.81	-1.8
2,371,254	+		IAI47_11210	0.81	-1.0
2,371,254	+		IAI47_11210	0.81	-1.9
2,371,254	+		IAI47_11210	0.81	-3.4
2,371,255	-		IAI47_11210	0.81	-0.1
2,371,320	-				+0.5
2,371,356	+				+0.1
2,371,356	+				-0.8
2,371,356	+				-1.6
2,371,356	+				-2.5
2,371,357	-				-0.3
2,371,357	-				-1.9
2,371,357	-				-1.8
2,371,357	-				-2.0
2,371,366	+				-1.6
2,371,367	-				-0.9
2,371,417	+				-1.9
2,371,418	-				-0.5
2,371,549	-		IAI47_11215	0.11	+1.4
2,371,628	+		IAI47_11215	0.18	+0.1
2,371,635	+		IAI47_11215	0.19	-0.4
2,371,635	+		IAI47_11215	0.19	+1.0
2,371,635	+		IAI47_11215	0.19	+0.2
2,371,636	-		IAI47_11215	0.19	-0.8
2,371,636	-		IAI47_11215	0.19	-2.3
2,371,636	-		IAI47_11215	0.19	-1.5
2,371,705	+		IAI47_11215	0.25	-0.2
2,371,705	+		IAI47_11215	0.25	-0.2
2,371,705	+		IAI47_11215	0.25	-0.7
2,371,705	+		IAI47_11215	0.25	+1.6
2,371,705	+		IAI47_11215	0.25	-1.2
2,371,705	+		IAI47_11215	0.25	-1.1
2,371,705	+		IAI47_11215	0.25	-3.5
2,371,706	-		IAI47_11215	0.25	+0.5
2,371,706	-		IAI47_11215	0.25	-0.7
2,371,706	-		IAI47_11215	0.25	-1.7
2,371,706	-		IAI47_11215	0.25	-0.1
2,371,859	+		IAI47_11215	0.38	-0.5
2,371,859	+		IAI47_11215	0.38	-2.4
2,371,860	-		IAI47_11215	0.38	+1.7
2,372,034	+		IAI47_11215	0.54	+0.1
2,372,111	+		IAI47_11215	0.61	-2.1
2,372,112	-		IAI47_11215	0.61	-3.3
2,372,149	-		IAI47_11215	0.64	-1.5
2,372,149	-		IAI47_11215	0.64	-0.4
2,372,175	+		IAI47_11215	0.66	-3.6
2,372,183	+		IAI47_11215	0.67	-1.1
2,372,183	+		IAI47_11215	0.67	+1.4
2,372,183	+		IAI47_11215	0.67	-1.1
2,372,184	-		IAI47_11215	0.67	+1.0
2,372,184	-		IAI47_11215	0.67	-1.3
2,372,184	-		IAI47_11215	0.67	-1.1
2,372,197	+		IAI47_11215	0.68	-2.3
2,372,197	+		IAI47_11215	0.68	-0.4
2,372,197	+		IAI47_11215	0.68	-1.7
2,372,197	+		IAI47_11215	0.68	+0.8
2,372,197	+		IAI47_11215	0.68	+0.1
2,372,197	+		IAI47_11215	0.68	-1.8
2,372,198	-		IAI47_11215	0.68	-1.5
2,372,198	-		IAI47_11215	0.68	-0.3
2,372,198	-		IAI47_11215	0.68	-1.3
2,372,198	-		IAI47_11215	0.68	-2.6
2,372,198	-		IAI47_11215	0.68	-0.2
2,372,198	-		IAI47_11215	0.68	+0.5
2,372,220	+		IAI47_11215	0.70	-0.5
2,372,220	+		IAI47_11215	0.70	-1.0
2,372,220	+		IAI47_11215	0.70	-1.0
2,372,240	+		IAI47_11215	0.72	-2.8
2,372,240	+		IAI47_11215	0.72	-1.5
2,372,240	+		IAI47_11215	0.72	+0.3
2,372,240	+		IAI47_11215	0.72	+1.2
2,372,241	-		IAI47_11215	0.72	+1.0
2,372,304	+		IAI47_11215	0.77	+2.3
2,372,328	+		IAI47_11215	0.80	-0.5
2,372,329	-		IAI47_11215	0.80	-0.8
2,372,372	+		IAI47_11215	0.83	-0.7