Strain Fitness in Pantoea sp. MT58 around IAI47_09320

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,964,198	+		IAI47_09315	0.62	-1.5
1,964,198	+		IAI47_09315	0.62	+1.9
1,964,198	+		IAI47_09315	0.62	+1.7
1,964,199	-		IAI47_09315	0.62	-0.7
1,964,206	+		IAI47_09315	0.62	-2.1
1,964,206	+		IAI47_09315	0.62	-0.8
1,964,206	+		IAI47_09315	0.62	+1.3
1,964,206	+		IAI47_09315	0.62	+2.9
1,964,206	+		IAI47_09315	0.62	-2.0
1,964,207	-		IAI47_09315	0.62	-1.0
1,964,207	-		IAI47_09315	0.62	+1.9
1,964,207	-		IAI47_09315	0.62	+0.9
1,964,207	-		IAI47_09315	0.62	-0.8
1,964,207	-		IAI47_09315	0.62	+1.7
1,964,207	-		IAI47_09315	0.62	-0.9
1,964,207	-		IAI47_09315	0.62	+1.2
1,964,207	-		IAI47_09315	0.62	-1.4
1,964,263	+		IAI47_09315	0.65	+0.3
1,964,264	-		IAI47_09315	0.65	+0.6
1,964,295	-		IAI47_09315	0.66	+1.0
1,964,295	-		IAI47_09315	0.66	+0.3
1,964,295	-		IAI47_09315	0.66	+0.0
1,964,295	-		IAI47_09315	0.66	+0.5
1,964,358	-		IAI47_09315	0.69	-0.3
1,964,358	-		IAI47_09315	0.69	-0.4
1,964,358	-		IAI47_09315	0.69	+0.6
1,964,368	+		IAI47_09315	0.70	+0.9
1,964,369	-		IAI47_09315	0.70	+1.6
1,964,369	-		IAI47_09315	0.70	-0.7
1,964,369	-		IAI47_09315	0.70	+1.2
1,964,369	-		IAI47_09315	0.70	+1.4
1,964,378	+		IAI47_09315	0.70	+1.2
1,964,378	+		IAI47_09315	0.70	+0.8
1,964,378	+		IAI47_09315	0.70	+0.0
1,964,379	-		IAI47_09315	0.70	+0.3
1,964,583	-		IAI47_09315	0.80	-1.1
1,964,583	-		IAI47_09315	0.80	+1.5
1,964,643	-		IAI47_09315	0.83	-1.2
1,964,643	-		IAI47_09315	0.83	-1.5
1,964,741	+		IAI47_09315	0.88	-0.1
1,964,742	-		IAI47_09315	0.88	+2.2
1,964,742	-		IAI47_09315	0.88	+0.4
1,964,755	+		IAI47_09315	0.88	+0.9
1,964,756	-		IAI47_09315	0.89	+0.5
1,964,757	-		IAI47_09315	0.89	+1.2
1,964,829	-				+2.6
1,964,839	+				-0.7
1,964,839	+				+1.0
1,964,839	+				-0.2
1,964,840	-				-0.2
1,964,840	-				+0.7
1,964,860	+				+0.8
1,964,860	+				+0.6
1,964,860	+				-0.7
1,964,962	-				+0.2
1,964,997	+				-0.1
1,964,997	+				+0.7
1,964,998	-				+0.3
1,965,049	+				+1.2
1,965,049	+				+2.0
1,965,050	-				-1.0
1,965,054	+				+2.0
1,965,055	-				+1.2
1,965,055	-				+0.8
1,965,064	+				+1.7
1,965,161	-				+0.3
1,965,181	+				-0.4
1,965,182	-				+0.3
1,965,182	-				+0.3
1,965,278	-				-0.4
1,965,278	-				+0.0
1,965,300	+				-1.2
1,965,300	+				-0.6
1,965,301	-				-1.9
1,965,301	-				+1.2
1,965,301	-				-1.4
1,965,301	-				+2.1
1,965,366	-				-1.7
1,965,472	+		IAI47_09320	0.14	-2.4
1,965,473	-		IAI47_09320	0.14	-0.4
1,965,481	+		IAI47_09320	0.15	-0.7
1,965,482	-		IAI47_09320	0.15	-1.8
1,965,482	-		IAI47_09320	0.15	-1.5
1,965,587	+		IAI47_09320	0.20	+0.5
1,965,655	+		IAI47_09320	0.24	-0.1
1,965,655	+		IAI47_09320	0.24	-1.7
1,965,655	+		IAI47_09320	0.24	-1.6
1,965,735	-		IAI47_09320	0.28	-1.3
1,965,821	+		IAI47_09320	0.32	+0.5
1,965,821	+		IAI47_09320	0.32	+1.0
1,965,821	+		IAI47_09320	0.32	-1.6
1,965,821	+		IAI47_09320	0.32	-1.0
1,965,821	+		IAI47_09320	0.32	+0.5
1,965,822	-		IAI47_09320	0.32	-0.8
1,965,822	-		IAI47_09320	0.32	+0.6
1,965,824	+		IAI47_09320	0.33	-0.4
1,965,824	+		IAI47_09320	0.33	-0.2
1,965,824	+		IAI47_09320	0.33	+0.1
1,965,825	-		IAI47_09320	0.33	-1.0
1,965,825	-		IAI47_09320	0.33	-0.5
1,965,840	+		IAI47_09320	0.33	-0.8
1,965,892	+		IAI47_09320	0.36	-0.4
1,965,893	-		IAI47_09320	0.36	-0.7
1,965,893	-		IAI47_09320	0.36	-0.7
1,965,896	+		IAI47_09320	0.36	+0.9
1,965,897	-		IAI47_09320	0.36	+0.1
1,965,968	+		IAI47_09320	0.40	+0.3
1,966,019	+		IAI47_09320	0.43	+0.1
1,966,019	+		IAI47_09320	0.43	-1.0
1,966,055	+		IAI47_09320	0.44	-0.0
1,966,193	-		IAI47_09320	0.52	-0.4
1,966,193	-		IAI47_09320	0.52	-1.1
1,966,266	+		IAI47_09320	0.55	-1.2
1,966,267	-		IAI47_09320	0.55	-1.4
1,966,267	-		IAI47_09320	0.55	-0.2
1,966,355	+		IAI47_09320	0.60	-0.7
1,966,356	-		IAI47_09320	0.60	-1.0
1,966,358	+		IAI47_09320	0.60	-1.2
1,966,359	-		IAI47_09320	0.60	-1.3
1,966,372	+		IAI47_09320	0.61	-0.6
1,966,372	+		IAI47_09320	0.61	-0.7
1,966,372	+		IAI47_09320	0.61	+0.1
1,966,372	+		IAI47_09320	0.61	-0.2
1,966,372	+		IAI47_09320	0.61	-1.4
1,966,373	-		IAI47_09320	0.61	-1.9
1,966,379	+		IAI47_09320	0.61	-1.8
1,966,403	+		IAI47_09320	0.62	-1.7
1,966,403	+		IAI47_09320	0.62	-0.1
1,966,404	-		IAI47_09320	0.62	+0.4
1,966,429	+		IAI47_09320	0.64	-0.1
1,966,430	-		IAI47_09320	0.64	-1.8
1,966,430	-		IAI47_09320	0.64	-1.3
1,966,454	+		IAI47_09320	0.65	-0.9
1,966,454	+		IAI47_09320	0.65	+1.6
1,966,493	-		IAI47_09320	0.67	-1.8
1,966,493	-		IAI47_09320	0.67	-1.2
1,966,509	-		IAI47_09320	0.68	-2.5
1,966,680	-		IAI47_09320	0.77	-0.3
1,966,680	-		IAI47_09320	0.77	-0.5
1,966,689	-		IAI47_09320	0.77	+0.8
1,966,700	-		IAI47_09320	0.78	+0.7
1,966,700	-		IAI47_09320	0.78	+0.4
1,966,700	-		IAI47_09320	0.78	-2.4
1,966,719	+		IAI47_09320	0.79	-0.7
1,966,720	-		IAI47_09320	0.79	-1.6
1,966,720	-		IAI47_09320	0.79	-1.5
1,966,743	+		IAI47_09320	0.80	-1.3
1,966,743	+		IAI47_09320	0.80	-1.3
1,966,949	+				-0.9
1,966,949	+				-0.3
1,966,952	+				+1.4
1,966,952	+				+0.3
1,966,953	-				+0.5
1,967,051	+				-1.8
1,967,130	-				-0.4
1,967,169	+				+0.6
1,967,170	-				-2.6
1,967,302	-				+0.2
1,967,369	+				-1.2
1,967,369	+				-0.6
1,967,369	+				+1.6
1,967,369	+				+1.0
1,967,370	-				-0.7
1,967,370	-				-1.8
1,967,370	-				-0.5
1,967,370	-				+0.9
1,967,394	+				+0.3
1,967,395	-				-0.3
1,967,395	-				-0.6
1,967,397	+				-1.2
1,967,397	+				-0.2
1,967,397	+				+1.4
1,967,397	+				+1.7
1,967,399	+				-0.4
1,967,400	-				-1.1
1,967,434	-				-1.8
1,967,434	-				-0.2
1,967,434	-				-1.1
1,967,434	-				-0.6
1,967,499	+		IAI47_09325	0.11	-1.4
1,967,499	+		IAI47_09325	0.11	-0.0
1,967,500	-		IAI47_09325	0.11	+0.6
1,967,500	-		IAI47_09325	0.11	-1.2
1,967,500	-		IAI47_09325	0.11	-2.0
1,967,582	+		IAI47_09325	0.15	-0.8
1,967,583	-		IAI47_09325	0.15	-1.8
1,967,583	-		IAI47_09325	0.15	-0.5
1,967,583	-		IAI47_09325	0.15	+2.3
1,967,583	-		IAI47_09325	0.15	-0.7
1,967,583	-		IAI47_09325	0.15	-1.0
1,967,694	+		IAI47_09325	0.20	+0.8
1,967,729	+		IAI47_09325	0.21	-0.3
1,967,730	-		IAI47_09325	0.21	-1.3
1,967,730	-		IAI47_09325	0.21	-0.7
1,967,793	+		IAI47_09325	0.24	-0.6
1,967,794	-		IAI47_09325	0.24	-0.8
1,967,813	+		IAI47_09325	0.25	-0.4
1,967,813	+		IAI47_09325	0.25	-0.8
1,967,814	-		IAI47_09325	0.25	-0.7
1,967,814	-		IAI47_09325	0.25	-1.2
1,967,814	-		IAI47_09325	0.25	-1.2
1,967,814	-		IAI47_09325	0.25	-0.7
1,967,919	+		IAI47_09325	0.29	-2.0
1,967,949	+		IAI47_09325	0.31	+0.6
1,967,950	-		IAI47_09325	0.31	-0.6
1,967,967	+		IAI47_09325	0.31	+0.6
1,967,970	+		IAI47_09325	0.32	-1.0
1,967,971	-		IAI47_09325	0.32	-0.4
1,967,971	-		IAI47_09325	0.32	-0.8
1,968,072	+		IAI47_09325	0.36	+1.2
1,968,073	-		IAI47_09325	0.36	-0.1
1,968,078	+		IAI47_09325	0.36	+1.0
1,968,078	+		IAI47_09325	0.36	-1.0
1,968,079	-		IAI47_09325	0.36	-0.0
1,968,079	-		IAI47_09325	0.36	+0.6
1,968,079	-		IAI47_09325	0.36	-0.2
1,968,079	-		IAI47_09325	0.36	-0.8
1,968,079	-		IAI47_09325	0.36	-0.4
1,968,079	-		IAI47_09325	0.36	-0.2