Strain Fitness in Pantoea sp. MT58 around IAI47_08675

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,831,991	+		IAI47_08665	0.74	+1.5
1,831,992	-		IAI47_08665	0.74	-0.2
1,831,992	-		IAI47_08665	0.74	+2.0
1,832,003	+		IAI47_08665	0.75	-0.5
1,832,004	-		IAI47_08665	0.75	+1.1
1,832,004	-		IAI47_08665	0.75	+0.8
1,832,051	+		IAI47_08665	0.79	-1.3
1,832,051	+		IAI47_08665	0.79	-1.1
1,832,051	+		IAI47_08665	0.79	+2.5
1,832,051	+		IAI47_08665	0.79	+0.8
1,832,051	+		IAI47_08665	0.79	+2.1
1,832,051	+		IAI47_08665	0.79	+1.2
1,832,051	+		IAI47_08665	0.79	-0.6
1,832,052	-		IAI47_08665	0.79	+0.1
1,832,052	-		IAI47_08665	0.79	-1.7
1,832,052	-		IAI47_08665	0.79	-1.1
1,832,052	-		IAI47_08665	0.79	+0.5
1,832,052	-		IAI47_08665	0.79	+0.4
1,832,052	-		IAI47_08665	0.79	-1.1
1,832,058	+		IAI47_08665	0.79	+0.5
1,832,058	+		IAI47_08665	0.79	+0.8
1,832,058	+		IAI47_08665	0.79	-0.5
1,832,059	-		IAI47_08665	0.79	-0.7
1,832,059	-		IAI47_08665	0.79	+0.4
1,832,059	-		IAI47_08665	0.79	-0.5
1,832,059	-		IAI47_08665	0.79	+1.7
1,832,059	-		IAI47_08665	0.79	-1.4
1,832,069	+		IAI47_08665	0.80	+0.1
1,832,069	+		IAI47_08665	0.80	+2.3
1,832,070	-		IAI47_08665	0.80	-1.4
1,832,070	-		IAI47_08665	0.80	+1.3
1,832,070	-		IAI47_08665	0.80	+1.3
1,832,070	-		IAI47_08665	0.80	+1.1
1,832,070	-		IAI47_08665	0.80	+1.1
1,832,313	-				-0.6
1,832,333	+				+0.4
1,832,333	+				-0.6
1,832,333	+				+0.4
1,832,333	+				-1.3
1,832,334	-				-0.8
1,832,334	-				+2.0
1,832,334	-				+0.5
1,832,334	-				-0.0
1,832,334	-				+0.4
1,832,376	-				+0.9
1,832,376	-				+0.3
1,832,382	+				-0.6
1,832,383	-				-1.3
1,832,443	+				-0.1
1,832,462	+				+1.0
1,832,463	-				-1.6
1,832,463	-				+0.4
1,832,484	+				+1.6
1,832,484	+				+0.5
1,832,484	+				+0.1
1,832,484	+				-1.7
1,832,485	-				-0.5
1,832,485	-				+1.2
1,832,485	-				+1.5
1,832,485	-				-1.8
1,832,485	-				-0.8
1,832,485	-				+1.9
1,832,485	-				-0.4
1,832,485	-				+0.0
1,832,485	-				-0.3
1,832,607	+		IAI47_08670	0.57	-1.4
1,832,607	+		IAI47_08670	0.57	-0.6
1,832,607	+		IAI47_08670	0.57	-1.1
1,832,607	+		IAI47_08670	0.57	+0.6
1,832,607	+		IAI47_08670	0.57	+0.2
1,832,608	-		IAI47_08670	0.58	-0.8
1,832,608	-		IAI47_08670	0.58	+2.4
1,832,759	+				-1.0
1,832,760	-				-0.9
1,832,760	-				+0.7
1,832,764	+				-0.8
1,832,764	+				+2.4
1,832,764	+				+0.5
1,832,765	-				-1.7
1,832,765	-				-2.2
1,832,765	-				-0.6
1,832,773	+				-1.4
1,832,774	-				-1.6
1,832,781	+				+1.9
1,832,781	+				+1.3
1,832,782	-				-0.8
1,832,782	-				+0.1
1,832,782	-				-0.5
1,832,782	-				-0.3
1,832,782	-				-0.8
1,832,782	-				-1.3
1,832,789	+				-0.5
1,832,789	+				+0.8
1,832,789	+				-0.1
1,832,806	+				+0.9
1,832,807	-				-0.3
1,832,841	+				-0.0
1,832,934	+				-0.4
1,832,936	+				+1.1
1,832,936	+				+1.5
1,832,936	+				-0.6
1,832,937	-				-1.2
1,832,937	-				+0.8
1,832,937	-				-0.5
1,832,937	-				-0.7
1,832,948	-				-1.2
1,832,982	-				+0.1
1,832,982	-				+0.2
1,832,982	-				+2.8
1,833,060	+		IAI47_08675	0.13	-1.5
1,833,060	+		IAI47_08675	0.13	-1.9
1,833,061	-		IAI47_08675	0.13	+0.4
1,833,061	-		IAI47_08675	0.13	+1.1
1,833,061	-		IAI47_08675	0.13	+1.2
1,833,076	+		IAI47_08675	0.16	+0.8
1,833,076	+		IAI47_08675	0.16	+0.3
1,833,076	+		IAI47_08675	0.16	+1.4
1,833,076	+		IAI47_08675	0.16	-0.4
1,833,077	-		IAI47_08675	0.16	+1.5
1,833,100	-		IAI47_08675	0.19	+2.2
1,833,122	-		IAI47_08675	0.23	-0.2
1,833,370	+		IAI47_08675	0.61	+1.3
1,833,370	+		IAI47_08675	0.61	+0.4
1,833,371	-		IAI47_08675	0.61	+1.4
1,833,392	+		IAI47_08675	0.64	+1.4
1,833,392	+		IAI47_08675	0.64	-0.0
1,833,393	-		IAI47_08675	0.65	+0.8
1,833,418	+		IAI47_08675	0.68	+0.6
1,833,419	-		IAI47_08675	0.69	-1.3
1,833,419	-		IAI47_08675	0.69	+0.7
1,833,515	+		IAI47_08675	0.83	+1.9
1,833,515	+		IAI47_08675	0.83	+0.6
1,833,534	+		IAI47_08675	0.86	-2.0
1,833,535	-		IAI47_08675	0.86	+1.3
1,833,566	+				-1.2
1,833,566	+				+0.1
1,833,566	+				-0.6
1,833,566	+				-1.0
1,833,566	+				-1.3
1,833,566	+				-0.6
1,833,567	-				+1.5
1,833,567	-				+0.1
1,833,568	+				-1.7
1,833,568	+				-0.4
1,833,568	+				-1.6
1,833,569	-				-0.3
1,833,569	-				+0.2
1,833,569	-				+1.3
1,833,569	-				+1.7
1,833,625	+				-0.7
1,833,625	+				+1.8
1,833,664	+				-1.4
1,833,665	-				-1.4
1,833,665	-				+1.5
1,833,721	+				-2.1
1,833,721	+				+2.6
1,833,721	+				+1.7
1,833,722	-				-0.9
1,833,722	-				+0.1
1,833,722	-				+0.3
1,833,763	+				-1.1
1,833,763	+				-0.2
1,833,764	-				+0.9
1,833,764	-				+0.0
1,833,768	-				-1.1
1,833,768	-				-2.2
1,833,971	+		IAI47_08680	0.24	+2.5
1,834,008	+		IAI47_08680	0.26	+3.1
1,834,008	+		IAI47_08680	0.26	-0.1
1,834,008	+		IAI47_08680	0.26	-0.8
1,834,009	-		IAI47_08680	0.26	+1.2
1,834,009	-		IAI47_08680	0.26	-0.1
1,834,010	+		IAI47_08680	0.26	+1.1
1,834,010	+		IAI47_08680	0.26	-1.4
1,834,011	-		IAI47_08680	0.26	-0.8
1,834,079	+		IAI47_08680	0.31	-1.5
1,834,088	+		IAI47_08680	0.32	+1.7
1,834,088	+		IAI47_08680	0.32	-1.1
1,834,088	+		IAI47_08680	0.32	-1.4
1,834,089	-		IAI47_08680	0.32	-0.3
1,834,089	-		IAI47_08680	0.32	+1.3
1,834,089	-		IAI47_08680	0.32	-1.1
1,834,089	-		IAI47_08680	0.32	-0.8
1,834,089	-		IAI47_08680	0.32	-1.6
1,834,090	+		IAI47_08680	0.32	+1.3
1,834,091	-		IAI47_08680	0.32	-0.5
1,834,091	-		IAI47_08680	0.32	-0.6
1,834,186	+		IAI47_08680	0.38	-0.1
1,834,186	+		IAI47_08680	0.38	-0.3
1,834,187	-		IAI47_08680	0.38	+2.8
1,834,187	-		IAI47_08680	0.38	-0.4
1,834,313	+		IAI47_08680	0.47	-0.5
1,834,314	-		IAI47_08680	0.47	-1.6
1,834,314	-		IAI47_08680	0.47	+0.3
1,834,314	-		IAI47_08680	0.47	-0.3
1,834,325	-		IAI47_08680	0.48	+0.1
1,834,540	-		IAI47_08680	0.62	-1.0