Strain Fitness in Pantoea sp. MT58 around IAI47_08385

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,776,035	-		IAI47_08380	0.20	+0.2
1,776,047	+		IAI47_08380	0.21	+1.1
1,776,048	-		IAI47_08380	0.22	-1.1
1,776,048	-		IAI47_08380	0.22	+0.2
1,776,048	-		IAI47_08380	0.22	-1.1
1,776,048	-		IAI47_08380	0.22	+0.6
1,776,076	-		IAI47_08380	0.24	+0.3
1,776,146	-		IAI47_08380	0.30	+0.8
1,776,146	-		IAI47_08380	0.30	-1.4
1,776,146	-		IAI47_08380	0.30	-0.5
1,776,149	+		IAI47_08380	0.30	+0.5
1,776,149	+		IAI47_08380	0.30	-0.5
1,776,150	-		IAI47_08380	0.30	+0.3
1,776,150	-		IAI47_08380	0.30	-0.2
1,776,209	+		IAI47_08380	0.36	-1.2
1,776,210	-		IAI47_08380	0.36	-1.9
1,776,210	-		IAI47_08380	0.36	+0.4
1,776,299	+		IAI47_08380	0.43	-2.2
1,776,300	-		IAI47_08380	0.44	+1.3
1,776,300	-		IAI47_08380	0.44	+1.7
1,776,300	-		IAI47_08380	0.44	-0.6
1,776,339	-		IAI47_08380	0.47	-2.1
1,776,339	-		IAI47_08380	0.47	+0.1
1,776,454	+		IAI47_08380	0.57	+0.7
1,776,455	-		IAI47_08380	0.57	-0.7
1,776,455	-		IAI47_08380	0.57	+0.4
1,776,464	+		IAI47_08380	0.58	-0.0
1,776,465	-		IAI47_08380	0.58	-1.8
1,776,597	+		IAI47_08380	0.69	+2.4
1,776,597	+		IAI47_08380	0.69	+0.5
1,776,598	-		IAI47_08380	0.70	+1.7
1,776,598	-		IAI47_08380	0.70	+0.1
1,776,717	+		IAI47_08380	0.80	-0.0
1,776,717	+		IAI47_08380	0.80	+0.0
1,776,718	-		IAI47_08380	0.80	+0.1
1,776,718	-		IAI47_08380	0.80	-0.5
1,776,882	+				+0.4
1,776,883	-				+1.7
1,776,895	+				-0.2
1,776,895	+				-0.0
1,776,895	+				+1.9
1,776,895	+				+2.4
1,776,895	+				+2.7
1,776,896	-				+0.6
1,776,896	-				+0.1
1,776,896	-				+1.4
1,776,896	-				+2.5
1,776,896	-				-0.5
1,776,896	-				+0.3
1,776,896	-				-1.4
1,776,921	-				+2.1
1,776,946	+				+0.7
1,776,946	+				-0.5
1,776,946	+				-0.5
1,776,946	+				-1.3
1,776,946	+				-0.2
1,776,947	-				-1.1
1,776,947	-				+0.0
1,776,950	+				-2.0
1,776,951	-				+1.1
1,776,951	-				+1.4
1,776,951	-				-0.3
1,776,971	-				+0.2
1,776,971	-				+1.1
1,776,985	+				+1.5
1,776,985	+				-1.0
1,776,985	+				+0.9
1,776,986	-				+2.9
1,776,986	-				+1.0
1,776,986	-				-1.5
1,776,986	-				+1.1
1,776,986	-				+0.2
1,777,018	+				+0.1
1,777,018	+				-1.1
1,777,018	+				+1.1
1,777,018	+				+0.6
1,777,018	+				-0.9
1,777,018	+				-0.5
1,777,018	+				+0.4
1,777,018	+				-0.1
1,777,018	+				+0.4
1,777,018	+				-1.3
1,777,019	-				-0.7
1,777,019	-				+0.4
1,777,019	-				+0.9
1,777,019	-				+1.0
1,777,199	+		IAI47_08385	0.22	+1.1
1,777,199	+		IAI47_08385	0.22	+1.1
1,777,200	-		IAI47_08385	0.22	+1.2
1,777,200	-		IAI47_08385	0.22	+1.3
1,777,230	+		IAI47_08385	0.26	+0.7
1,777,230	+		IAI47_08385	0.26	+2.3
1,777,231	-		IAI47_08385	0.26	+0.5
1,777,231	-		IAI47_08385	0.26	-1.7
1,777,232	+		IAI47_08385	0.27	+0.1
1,777,232	+		IAI47_08385	0.27	-1.5
1,777,233	-		IAI47_08385	0.27	-0.7
1,777,277	-		IAI47_08385	0.33	-0.2
1,777,331	+		IAI47_08385	0.40	+0.1
1,777,332	-		IAI47_08385	0.40	+0.9
1,777,358	+		IAI47_08385	0.43	+1.6
1,777,358	+		IAI47_08385	0.43	+0.0
1,777,442	-		IAI47_08385	0.54	+2.0
1,777,522	+		IAI47_08385	0.65	+0.3
1,777,522	+		IAI47_08385	0.65	+1.9
1,777,523	-		IAI47_08385	0.65	+0.0
1,777,523	-		IAI47_08385	0.65	-1.9
1,777,523	-		IAI47_08385	0.65	-1.1
1,777,544	+		IAI47_08385	0.68	+2.9
1,777,544	+		IAI47_08385	0.68	+1.0
1,777,544	+		IAI47_08385	0.68	+1.6
1,777,544	+		IAI47_08385	0.68	+1.4
1,777,544	+		IAI47_08385	0.68	+1.3
1,777,544	+		IAI47_08385	0.68	+1.1
1,777,544	+		IAI47_08385	0.68	-0.5
1,777,545	-		IAI47_08385	0.68	+0.7
1,777,545	-		IAI47_08385	0.68	-0.1
1,777,547	+		IAI47_08385	0.68	+0.8
1,777,547	+		IAI47_08385	0.68	+1.4
1,777,547	+		IAI47_08385	0.68	+0.7
1,777,548	-		IAI47_08385	0.69	+0.9
1,777,548	-		IAI47_08385	0.69	+1.1
1,777,548	-		IAI47_08385	0.69	+0.9
1,777,548	-		IAI47_08385	0.69	+0.5
1,777,713	+				-1.3
1,777,713	+				+0.1
1,777,720	+				+0.2
1,777,720	+				-0.1
1,777,721	-				-0.6
1,777,818	+				-0.7
1,777,839	+				+1.0
1,777,840	-				-1.7
1,777,852	+				-1.3
1,777,903	+				-0.1
1,777,948	+				+0.1
1,777,948	+				+2.1
1,777,948	+				-0.5
1,777,948	+				+0.4
1,777,948	+				-1.2
1,777,948	+				-0.1
1,777,948	+				-0.6
1,777,949	-				-0.1
1,777,949	-				-0.2
1,777,949	-				-0.9
1,777,949	-				+1.7
1,777,985	+				+1.4
1,777,986	-				-0.6
1,777,986	-				-1.5
1,778,027	-				-0.6
1,778,069	+				-1.0
1,778,069	+				-0.3
1,778,069	+				+0.8
1,778,070	-				+2.7
1,778,070	-				+1.7
1,778,070	-				-1.7
1,778,074	+				+0.2
1,778,075	-				+0.3
1,778,100	+				-1.3
1,778,101	-				-0.9
1,778,182	+		IAI47_08390	0.13	-1.6
1,778,182	+		IAI47_08390	0.13	+0.4
1,778,188	+		IAI47_08390	0.13	-2.5
1,778,188	+		IAI47_08390	0.13	+1.0
1,778,188	+		IAI47_08390	0.13	-2.1
1,778,189	-		IAI47_08390	0.13	+0.0
1,778,189	-		IAI47_08390	0.13	-0.3
1,778,189	-		IAI47_08390	0.13	+0.1
1,778,189	-		IAI47_08390	0.13	-0.7
1,778,324	+		IAI47_08390	0.29	+2.5
1,778,341	+		IAI47_08390	0.31	-1.0
1,778,341	+		IAI47_08390	0.31	+0.5
1,778,341	+		IAI47_08390	0.31	+0.7
1,778,341	+		IAI47_08390	0.31	+0.1
1,778,341	+		IAI47_08390	0.31	+0.4
1,778,342	-		IAI47_08390	0.32	+3.5
1,778,342	-		IAI47_08390	0.32	-1.5
1,778,342	-		IAI47_08390	0.32	-1.2
1,778,342	-		IAI47_08390	0.32	+1.5
1,778,342	-		IAI47_08390	0.32	+0.5
1,778,342	-		IAI47_08390	0.32	+1.1
1,778,342	-		IAI47_08390	0.32	-0.1
1,778,342	-		IAI47_08390	0.32	-2.6
1,778,368	+		IAI47_08390	0.35	-1.1
1,778,368	+		IAI47_08390	0.35	+1.4
1,778,368	+		IAI47_08390	0.35	-1.1
1,778,403	-		IAI47_08390	0.39	+0.7
1,778,408	+		IAI47_08390	0.39	-0.2
1,778,408	+		IAI47_08390	0.39	-0.6
1,778,409	-		IAI47_08390	0.39	+1.5
1,778,434	+		IAI47_08390	0.42	+0.1
1,778,434	+		IAI47_08390	0.42	+1.4
1,778,435	-		IAI47_08390	0.43	+3.6
1,778,470	+		IAI47_08390	0.47	-1.0
1,778,470	+		IAI47_08390	0.47	+0.2
1,778,470	+		IAI47_08390	0.47	+1.7
1,778,470	+		IAI47_08390	0.47	-0.3
1,778,471	-		IAI47_08390	0.47	+0.5
1,778,471	-		IAI47_08390	0.47	+0.5
1,778,471	-		IAI47_08390	0.47	-0.5
1,778,500	+		IAI47_08390	0.50	-1.3
1,778,501	-		IAI47_08390	0.50	-1.2
1,778,522	-		IAI47_08390	0.53	+1.5
1,778,522	-		IAI47_08390	0.53	+1.1
1,778,546	-		IAI47_08390	0.56	-0.3
1,778,546	-		IAI47_08390	0.56	+0.3
1,778,558	+		IAI47_08390	0.57	-1.1
1,778,558	+		IAI47_08390	0.57	+0.6
1,778,558	+		IAI47_08390	0.57	-1.0
1,778,558	+		IAI47_08390	0.57	-0.9
1,778,558	+		IAI47_08390	0.57	+0.3
1,778,559	-		IAI47_08390	0.57	-1.1
1,778,559	-		IAI47_08390	0.57	-0.6
1,778,559	-		IAI47_08390	0.57	+1.1
1,778,564	+		IAI47_08390	0.58	-0.1
1,778,564	+		IAI47_08390	0.58	+0.6
1,778,564	+		IAI47_08390	0.58	+0.6
1,778,564	+		IAI47_08390	0.58	-0.4
1,778,565	-		IAI47_08390	0.58	+0.3
1,778,565	-		IAI47_08390	0.58	-1.7
1,778,569	+		IAI47_08390	0.58	-1.2
1,778,577	+		IAI47_08390	0.59	-0.2
1,778,636	+		IAI47_08390	0.66	+1.1
1,778,696	+		IAI47_08390	0.73	-0.3
1,778,696	+		IAI47_08390	0.73	-0.3
1,778,696	+		IAI47_08390	0.73	+0.7
1,778,696	+		IAI47_08390	0.73	-0.3
1,778,697	-		IAI47_08390	0.74	+0.9
1,778,697	-		IAI47_08390	0.74	-1.6
1,778,697	-		IAI47_08390	0.74	+1.5
1,778,702	+		IAI47_08390	0.74	+0.3
1,778,702	+		IAI47_08390	0.74	-1.0
1,778,702	+		IAI47_08390	0.74	+0.5
1,778,702	+		IAI47_08390	0.74	+0.8
1,778,702	+		IAI47_08390	0.74	+1.6
1,778,702	+		IAI47_08390	0.74	+0.0
1,778,702	+		IAI47_08390	0.74	+0.3
1,778,702	+		IAI47_08390	0.74	+0.2
1,778,702	+		IAI47_08390	0.74	-0.1
1,778,702	+		IAI47_08390	0.74	+1.4
1,778,702	+		IAI47_08390	0.74	-1.8
1,778,702	+		IAI47_08390	0.74	-2.1
1,778,702	+		IAI47_08390	0.74	-0.1
1,778,703	-		IAI47_08390	0.74	-1.3
1,778,703	-		IAI47_08390	0.74	+0.7
1,778,703	-		IAI47_08390	0.74	-0.5
1,778,703	-		IAI47_08390	0.74	-1.1
1,778,703	-		IAI47_08390	0.74	+0.9
1,778,703	-		IAI47_08390	0.74	+0.4
1,778,703	-		IAI47_08390	0.74	-0.4
1,778,703	-		IAI47_08390	0.74	+1.3
1,778,703	-		IAI47_08390	0.74	+1.1
1,778,703	-		IAI47_08390	0.74	+0.7
1,778,703	-		IAI47_08390	0.74	-1.4
1,778,724	+		IAI47_08390	0.77	+1.3
1,778,725	-		IAI47_08390	0.77	-0.6
1,778,732	-		IAI47_08390	0.78	-0.3
1,778,732	-		IAI47_08390	0.78	+1.3