Strain Fitness in Pantoea sp. MT58 around IAI47_06515

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,355,112	+		IAI47_06510	0.66	+2.1
1,355,112	+		IAI47_06510	0.66	-1.3
1,355,112	+		IAI47_06510	0.66	+0.0
1,355,129	-		IAI47_06510	0.67	-1.8
1,355,254	+		IAI47_06510	0.78	+0.2
1,355,254	+		IAI47_06510	0.78	+0.6
1,355,254	+		IAI47_06510	0.78	+0.5
1,355,254	+		IAI47_06510	0.78	-0.1
1,355,255	-		IAI47_06510	0.78	-0.8
1,355,255	-		IAI47_06510	0.78	-1.4
1,355,258	+		IAI47_06510	0.78	-0.8
1,355,259	-		IAI47_06510	0.79	+0.2
1,355,259	-		IAI47_06510	0.79	-1.1
1,355,259	-		IAI47_06510	0.79	-0.8
1,355,330	+		IAI47_06510	0.85	+1.0
1,355,330	+		IAI47_06510	0.85	+1.3
1,355,331	-		IAI47_06510	0.85	-2.3
1,355,331	-		IAI47_06510	0.85	+0.0
1,355,331	-		IAI47_06510	0.85	-0.3
1,355,331	-		IAI47_06510	0.85	+0.6
1,355,333	+		IAI47_06510	0.85	-1.5
1,355,333	+		IAI47_06510	0.85	+0.6
1,355,333	+		IAI47_06510	0.85	-0.3
1,355,333	+		IAI47_06510	0.85	+0.1
1,355,333	+		IAI47_06510	0.85	+0.9
1,355,333	+		IAI47_06510	0.85	-0.8
1,355,334	-		IAI47_06510	0.85	+1.4
1,355,334	-		IAI47_06510	0.85	+0.9
1,355,334	-		IAI47_06510	0.85	+0.7
1,355,334	-		IAI47_06510	0.85	-0.0
1,355,334	-		IAI47_06510	0.85	-0.1
1,355,336	+		IAI47_06510	0.85	-0.3
1,355,345	+		IAI47_06510	0.86	-0.1
1,355,345	+		IAI47_06510	0.86	-1.9
1,355,345	+		IAI47_06510	0.86	-1.9
1,355,346	-		IAI47_06510	0.86	-0.7
1,355,346	-		IAI47_06510	0.86	-0.2
1,355,460	-				-1.0
1,355,479	+				+0.6
1,355,532	+				-0.1
1,355,532	+				+0.9
1,355,533	-				+0.5
1,355,533	-				+0.8
1,355,533	-				+0.3
1,355,544	+				-2.4
1,355,545	-				+0.8
1,355,553	-				+2.3
1,355,579	-				-0.1
1,355,665	+				-1.8
1,355,665	+				+0.3
1,355,666	-				+0.6
1,355,667	+				-3.6
1,355,667	+				-1.0
1,355,668	-				+2.6
1,355,671	-				-1.7
1,355,671	-				+0.8
1,355,671	-				-1.3
1,355,723	+				+0.8
1,355,734	-				+0.1
1,355,734	-				+0.4
1,355,760	-				+0.3
1,355,760	-				-0.8
1,355,762	+				+2.2
1,355,762	+				-0.1
1,355,763	-				+3.2
1,355,770	+				-1.1
1,355,795	+				-1.0
1,355,795	+				-0.7
1,355,795	+				+1.2
1,355,795	+				+0.2
1,355,796	-				+1.1
1,355,810	+				+0.2
1,355,850	-				+2.1
1,355,861	-				+0.2
1,355,925	+				-2.7
1,355,925	+				+0.0
1,355,926	-				+0.2
1,355,926	-				+0.2
1,355,941	-				+0.7
1,355,953	-				-2.2
1,356,009	+				-0.2
1,356,010	-				+1.0
1,356,052	+				-0.4
1,356,053	-				+2.7
1,356,079	-				-0.1
1,356,088	+				-2.1
1,356,090	+				-0.5
1,356,090	+				+2.0
1,356,090	+				+0.8
1,356,091	-				-1.8
1,356,091	-				-1.2
1,356,100	+				-1.3
1,356,182	+				+0.1
1,356,183	-				-1.0
1,356,184	+				-1.3
1,356,184	+				-2.1
1,356,187	+				-2.1
1,356,187	+				+0.4
1,356,188	-				+1.4
1,356,188	-				-0.4
1,356,205	-				-0.7
1,356,218	-				-0.3
1,356,236	+		IAI47_06515	0.12	-0.5
1,356,236	+		IAI47_06515	0.12	-0.2
1,356,236	+		IAI47_06515	0.12	-0.3
1,356,237	-		IAI47_06515	0.12	+1.3
1,356,237	-		IAI47_06515	0.12	-1.3
1,356,237	-		IAI47_06515	0.12	+0.9
1,356,275	+		IAI47_06515	0.15	-0.5
1,356,275	+		IAI47_06515	0.15	+1.1
1,356,275	+		IAI47_06515	0.15	-0.3
1,356,275	+		IAI47_06515	0.15	-1.7
1,356,275	+		IAI47_06515	0.15	+0.4
1,356,276	-		IAI47_06515	0.15	+0.0
1,356,276	-		IAI47_06515	0.15	-1.0
1,356,276	-		IAI47_06515	0.15	+0.7
1,356,276	-		IAI47_06515	0.15	-0.6
1,356,276	-		IAI47_06515	0.15	-0.1
1,356,344	+		IAI47_06515	0.21	+1.5
1,356,344	+		IAI47_06515	0.21	+0.7
1,356,357	+		IAI47_06515	0.22	-0.2
1,356,357	+		IAI47_06515	0.22	-0.3
1,356,357	+		IAI47_06515	0.22	+1.1
1,356,358	-		IAI47_06515	0.23	-0.7
1,356,446	+		IAI47_06515	0.30	-1.0
1,356,446	+		IAI47_06515	0.30	-0.7
1,356,447	-		IAI47_06515	0.31	+0.6
1,356,447	-		IAI47_06515	0.31	+0.5
1,356,454	+		IAI47_06515	0.31	+0.1
1,356,454	+		IAI47_06515	0.31	-0.4
1,356,454	+		IAI47_06515	0.31	+1.2
1,356,455	-		IAI47_06515	0.31	-0.8
1,356,455	-		IAI47_06515	0.31	-1.6
1,356,465	+		IAI47_06515	0.32	-1.1
1,356,470	+		IAI47_06515	0.33	-0.7
1,356,470	+		IAI47_06515	0.33	-1.2
1,356,470	+		IAI47_06515	0.33	-1.0
1,356,470	+		IAI47_06515	0.33	+0.4
1,356,470	+		IAI47_06515	0.33	-1.3
1,356,470	+		IAI47_06515	0.33	+0.5
1,356,470	+		IAI47_06515	0.33	+0.6
1,356,471	-		IAI47_06515	0.33	+0.5
1,356,471	-		IAI47_06515	0.33	+0.5
1,356,471	-		IAI47_06515	0.33	+0.3
1,356,471	-		IAI47_06515	0.33	-0.7
1,356,471	-		IAI47_06515	0.33	+0.2
1,356,471	-		IAI47_06515	0.33	+0.2
1,356,471	-		IAI47_06515	0.33	+0.4
1,356,471	-		IAI47_06515	0.33	-1.2
1,356,518	-		IAI47_06515	0.37	-1.3
1,356,521	+		IAI47_06515	0.37	-1.3
1,356,521	+		IAI47_06515	0.37	+0.0
1,356,521	+		IAI47_06515	0.37	-0.6
1,356,521	+		IAI47_06515	0.37	+1.3
1,356,521	+		IAI47_06515	0.37	-0.8
1,356,521	+		IAI47_06515	0.37	+1.7
1,356,521	+		IAI47_06515	0.37	+2.3
1,356,521	+		IAI47_06515	0.37	+1.0
1,356,522	-		IAI47_06515	0.37	-0.4
1,356,522	-		IAI47_06515	0.37	+0.9
1,356,522	-		IAI47_06515	0.37	+0.5
1,356,522	-		IAI47_06515	0.37	-0.4
1,356,522	-		IAI47_06515	0.37	+0.3
1,356,522	-		IAI47_06515	0.37	-1.3
1,356,532	+		IAI47_06515	0.38	+1.7
1,356,533	-		IAI47_06515	0.38	-2.3
1,356,542	+		IAI47_06515	0.39	+1.1
1,356,543	-		IAI47_06515	0.39	-1.8
1,356,543	-		IAI47_06515	0.39	-1.8
1,356,575	-		IAI47_06515	0.42	+0.9
1,356,575	-		IAI47_06515	0.42	-1.8
1,356,624	-		IAI47_06515	0.46	-0.8
1,356,713	+		IAI47_06515	0.54	-0.8
1,356,713	+		IAI47_06515	0.54	+2.0
1,356,713	+		IAI47_06515	0.54	+0.6
1,356,713	+		IAI47_06515	0.54	+0.4
1,356,713	+		IAI47_06515	0.54	+0.6
1,356,713	+		IAI47_06515	0.54	-3.0
1,356,713	+		IAI47_06515	0.54	+1.4
1,356,713	+		IAI47_06515	0.54	-2.1
1,356,713	+		IAI47_06515	0.54	-0.3
1,356,713	+		IAI47_06515	0.54	-2.0
1,356,714	-		IAI47_06515	0.55	-3.6
1,356,714	-		IAI47_06515	0.55	-0.7
1,356,714	-		IAI47_06515	0.55	-1.3
1,356,714	-		IAI47_06515	0.55	-0.2
1,356,767	-		IAI47_06515	0.59	-2.0
1,356,767	-		IAI47_06515	0.59	+0.9
1,356,796	+		IAI47_06515	0.62	+1.0
1,356,827	+		IAI47_06515	0.65	+0.5
1,356,827	+		IAI47_06515	0.65	-0.2
1,356,827	+		IAI47_06515	0.65	+0.7
1,356,827	+		IAI47_06515	0.65	+0.9
1,356,828	-		IAI47_06515	0.65	+1.7
1,356,830	-		IAI47_06515	0.65	-0.9
1,356,830	-		IAI47_06515	0.65	+0.4
1,356,845	+		IAI47_06515	0.66	+0.7
1,356,845	+		IAI47_06515	0.66	-1.3
1,356,863	+		IAI47_06515	0.68	+0.8
1,356,878	+		IAI47_06515	0.69	+0.2
1,356,878	+		IAI47_06515	0.69	-1.2
1,356,878	+		IAI47_06515	0.69	+0.6
1,356,879	-		IAI47_06515	0.69	-0.5
1,356,879	-		IAI47_06515	0.69	+1.0
1,356,974	+		IAI47_06515	0.78	-0.1
1,356,974	+		IAI47_06515	0.78	-2.3
1,356,975	-		IAI47_06515	0.78	+0.7
1,357,010	+		IAI47_06515	0.81	+0.6
1,357,010	+		IAI47_06515	0.81	-1.5
1,357,011	-		IAI47_06515	0.81	+0.5
1,357,011	-		IAI47_06515	0.81	-1.2
1,357,070	-		IAI47_06515	0.87	-1.3
1,357,088	+		IAI47_06515	0.88	+1.8
1,357,088	+		IAI47_06515	0.88	-0.4
1,357,088	+		IAI47_06515	0.88	+1.6
1,357,088	+		IAI47_06515	0.88	+0.3
1,357,088	+		IAI47_06515	0.88	-0.8
1,357,088	+		IAI47_06515	0.88	+1.2
1,357,088	+		IAI47_06515	0.88	-0.0
1,357,088	+		IAI47_06515	0.88	+0.7
1,357,089	-		IAI47_06515	0.88	-0.1
1,357,089	-		IAI47_06515	0.88	-0.3
1,357,089	-		IAI47_06515	0.88	-1.3
1,357,091	+		IAI47_06515	0.88	+1.0
1,357,091	+		IAI47_06515	0.88	-1.0
1,357,092	-		IAI47_06515	0.88	+0.5
1,357,092	-		IAI47_06515	0.88	+0.5
1,357,111	+				-0.0
1,357,111	+				+3.5
1,357,111	+				+0.6
1,357,111	+				-0.4
1,357,111	+				-0.9
1,357,111	+				-1.3
1,357,111	+				-2.1
1,357,111	+				+1.7
1,357,111	+				+1.3
1,357,111	+				+1.7
1,357,111	+				-1.1
1,357,112	-				+1.7
1,357,112	-				+0.2
1,357,112	-				+2.7
1,357,112	-				-0.7
1,357,112	-				-0.6
1,357,112	-				+0.7
1,357,112	-				-0.0
1,357,112	-				-1.4
1,357,115	+				-0.4
1,357,115	+				+0.8
1,357,115	+				-1.2
1,357,115	+				+0.9
1,357,115	+				-1.6
1,357,115	+				+0.3
1,357,115	+				-2.2
1,357,115	+				-2.4
1,357,115	+				-0.8
1,357,115	+				+1.3
1,357,116	-				+0.3
1,357,116	-				-1.1
1,357,116	-				-1.7
1,357,116	-				-1.1
1,357,116	-				+0.7
1,357,116	-				+1.7
1,357,116	-				+0.4
1,357,116	-				+0.1
1,357,116	-				-0.7
1,357,116	-				+0.0
1,357,125	-				-0.1
1,357,178	-				-1.7
1,357,197	+				-0.5
1,357,197	+				-0.6
1,357,197	+				-1.4
1,357,197	+				-1.6
1,357,197	+				-0.3
1,357,197	+				-1.3
1,357,198	-				+0.8
1,357,198	-				-1.7
1,357,198	-				-0.6
1,357,209	-				-0.7
1,357,209	-				-2.0
1,357,217	+				-1.1
1,357,217	+				+0.2
1,357,217	+				-1.1
1,357,217	+				+1.0
1,357,217	+				-1.0
1,357,217	+				+1.1
1,357,217	+				-1.9
1,357,217	+				+0.6
1,357,218	-				+0.4
1,357,238	+				-1.1
1,357,238	+				-1.0
1,357,257	+		IAI47_06520	0.10	+1.4
1,357,257	+		IAI47_06520	0.10	-0.3
1,357,257	+		IAI47_06520	0.10	+1.1
1,357,258	-		IAI47_06520	0.11	-1.2
1,357,270	-		IAI47_06520	0.17	+0.1
1,357,270	-		IAI47_06520	0.17	+0.8
1,357,326	+		IAI47_06520	0.46	-1.7
1,357,326	+		IAI47_06520	0.46	-0.1
1,357,326	+		IAI47_06520	0.46	-1.3
1,357,326	+		IAI47_06520	0.46	-0.8
1,357,326	+		IAI47_06520	0.46	-0.1
1,357,326	+		IAI47_06520	0.46	-0.7
1,357,327	-		IAI47_06520	0.46	-0.5
1,357,327	-		IAI47_06520	0.46	-2.3
1,357,327	-		IAI47_06520	0.46	-0.8
1,357,327	-		IAI47_06520	0.46	-1.1
1,357,327	-		IAI47_06520	0.46	+0.8
1,357,327	-		IAI47_06520	0.46	-1.1
1,357,449	+				-1.3
1,357,449	+				+2.1
1,357,450	-				-0.3
1,357,487	+				-0.7
1,357,487	+				-0.8
1,357,525	+				+0.9
1,357,525	+				-1.0
1,357,525	+				-1.0
1,357,525	+				+0.7
1,357,525	+				-1.5
1,357,574	-				-0.3
1,357,637	+				-0.6
1,357,637	+				-2.1
1,357,637	+				-2.1
1,357,637	+				+1.3
1,357,637	+				-1.3
1,357,637	+				-1.7
1,357,637	+				-0.4
1,357,638	-				+0.9
1,357,638	-				-0.1
1,357,640	-				+1.4
1,357,684	+				+0.4
1,357,684	+				-0.4
1,357,684	+				-1.8
1,357,684	+				-1.3
1,357,685	-				-1.3
1,357,685	-				+1.0
1,357,685	-				+2.9
1,357,685	-				+0.7
1,357,695	+				-1.1
1,357,695	+				+1.2
1,357,695	+				+0.5
1,357,695	+				+1.6
1,357,696	-				-0.1
1,357,696	-				+0.5
1,357,696	-				-2.0
1,357,696	-				+1.6
1,357,696	-				-0.8
1,357,696	-				+0.6
1,357,703	+				-0.3
1,357,703	+				-0.6
1,357,704	-				-2.1
1,357,704	-				+0.7
1,357,704	-				+2.1
1,357,704	-				+1.6
1,357,713	-				+0.3
1,357,713	-				-0.5
1,357,713	-				+1.4
1,357,713	-				-0.8
1,357,713	-				-0.8
1,357,713	-				+0.1
1,357,713	-				+0.6
1,357,718	+				+0.4
1,357,719	-				-0.1
1,357,747	+				+0.4
1,357,747	+				+0.7
1,357,747	+				+1.7
1,357,748	-				+1.2
1,357,748	-				+0.7
1,357,783	+				-0.1
1,357,793	+				-1.3
1,357,794	-				-0.5
1,357,819	-				-1.3
1,357,841	-				+0.3