Strain Fitness in Pantoea sp. MT58 around IAI47_06480

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,325,010	+				+1.7
1,325,010	+				+2.9
1,325,010	+				-1.0
1,325,044	-				-0.7
1,325,044	-				+0.8
1,325,044	-				-0.4
1,325,082	-				+0.1
1,325,082	-				-1.1
1,325,154	+				-0.6
1,325,154	+				-0.9
1,325,154	+				-2.1
1,325,154	+				-0.3
1,325,154	+				+1.4
1,325,155	-				-1.2
1,325,155	-				-1.1
1,325,166	+				-1.0
1,325,167	-				-1.3
1,325,167	-				-1.7
1,325,172	+				+0.1
1,325,172	+				-2.5
1,325,173	-				-0.1
1,325,198	+				-0.7
1,325,198	+				-1.0
1,325,198	+				+0.2
1,325,227	+				+1.2
1,325,227	+				-2.0
1,325,227	+				-0.2
1,325,227	+				+1.0
1,325,227	+				-1.5
1,325,227	+				+0.3
1,325,228	-				-0.2
1,325,228	-				-0.9
1,325,316	+				+1.1
1,325,316	+				-0.7
1,325,316	+				-1.4
1,325,316	+				+2.9
1,325,316	+				+2.1
1,325,316	+				-0.5
1,325,317	-				+0.7
1,325,317	-				+2.0
1,325,317	-				+2.5
1,325,317	-				-0.4
1,325,317	-				+0.4
1,325,317	-				+0.9
1,325,317	-				+0.2
1,325,317	-				+0.4
1,325,317	-				-1.5
1,325,355	+				+0.4
1,325,355	+				-0.3
1,325,356	-				+0.4
1,325,356	-				-2.4
1,325,432	-		IAI47_06475	0.18	+0.7
1,325,432	-		IAI47_06475	0.18	-0.6
1,325,529	+		IAI47_06475	0.33	+0.9
1,325,619	-		IAI47_06475	0.47	+1.4
1,325,696	-		IAI47_06475	0.59	-0.4
1,325,716	+		IAI47_06475	0.62	-0.6
1,325,716	+		IAI47_06475	0.62	+0.4
1,325,716	+		IAI47_06475	0.62	+1.4
1,325,717	-				-0.1
1,325,717	-		IAI47_06475	0.62	-1.1
1,325,747	-		IAI47_06475	0.66	+0.7
1,325,748	+		IAI47_06475	0.67	-0.1
1,325,752	+		IAI47_06475	0.67	+0.7
1,325,752	+		IAI47_06475	0.67	+0.1
1,325,761	+		IAI47_06475	0.69	+2.1
1,325,762	-		IAI47_06475	0.69	+0.7
1,325,762	-		IAI47_06475	0.69	+3.4
1,325,762	-		IAI47_06475	0.69	+0.9
1,325,762	-		IAI47_06475	0.69	+1.3
1,325,762	-		IAI47_06475	0.69	+1.0
1,325,762	-		IAI47_06475	0.69	+1.3
1,325,764	+		IAI47_06475	0.69	-1.4
1,325,765	-		IAI47_06475	0.69	+0.4
1,325,776	-		IAI47_06475	0.71	-0.9
1,325,791	+		IAI47_06475	0.73	+2.3
1,325,791	+		IAI47_06475	0.73	+3.4
1,325,791	+		IAI47_06475	0.73	+2.9
1,325,791	+		IAI47_06475	0.73	+1.9
1,325,836	+		IAI47_06475	0.80	+1.3
1,325,837	-		IAI47_06475	0.80	+0.4
1,325,837	-		IAI47_06475	0.80	+2.4
1,325,837	-		IAI47_06475	0.80	+1.5
1,325,870	+		IAI47_06475	0.85	+1.5
1,325,870	+		IAI47_06475	0.85	+1.9
1,325,871	-		IAI47_06475	0.85	+0.6
1,325,871	-		IAI47_06475	0.85	+0.4
1,325,955	-				+1.9
1,325,959	+				-0.4
1,325,959	+				+0.1
1,325,968	+				+1.7
1,325,969	-				+1.4
1,325,976	-				+0.5
1,326,001	+				+1.6
1,326,001	+				+0.7
1,326,001	+				-0.3
1,326,001	+				+1.3
1,326,002	-				-3.6
1,326,002	-				-1.5
1,326,012	-				-1.4
1,326,012	-				+0.6
1,326,023	+				+1.9
1,326,023	+				-0.4
1,326,029	+				-0.4
1,326,030	-				-2.1
1,326,030	-				+0.4
1,326,030	-				-0.4
1,326,053	+				+1.7
1,326,053	+				-0.7
1,326,053	+				-1.1
1,326,054	-				-1.1
1,326,067	-				-1.4
1,326,067	-				-0.5
1,326,124	-				+3.1
1,326,154	+				+0.7
1,326,155	-				+1.3
1,326,177	-				-1.4
1,326,177	-				+1.0
1,326,178	+				-0.3
1,326,178	+				-1.0
1,326,178	+				+1.1
1,326,178	+				+1.1
1,326,179	-				-1.0
1,326,179	-				-1.2
1,326,179	-				-1.1
1,326,179	-				+1.0
1,326,179	-				+0.7
1,326,180	-				-1.0
1,326,201	+				-1.0
1,326,241	-		IAI47_06480	0.10	+0.7
1,326,336	-		IAI47_06480	0.14	-0.7
1,326,423	-		IAI47_06480	0.17	+1.0
1,326,533	+		IAI47_06480	0.21	-1.0
1,326,534	-		IAI47_06480	0.21	-2.8
1,326,534	-		IAI47_06480	0.21	-1.8
1,326,538	-		IAI47_06480	0.21	-2.3
1,326,538	-		IAI47_06480	0.21	+0.4
1,326,538	-		IAI47_06480	0.21	-2.2
1,326,638	+		IAI47_06480	0.25	+0.2
1,326,639	-		IAI47_06480	0.25	-0.5
1,326,639	-		IAI47_06480	0.25	-0.7
1,326,640	+		IAI47_06480	0.25	-0.4
1,326,641	-		IAI47_06480	0.25	-0.7
1,326,641	-		IAI47_06480	0.25	-2.7
1,326,641	-		IAI47_06480	0.25	-1.7
1,326,707	+		IAI47_06480	0.28	+0.7
1,326,707	+		IAI47_06480	0.28	-0.3
1,326,707	+		IAI47_06480	0.28	+1.0
1,326,708	-		IAI47_06480	0.28	-1.6
1,326,708	-		IAI47_06480	0.28	-2.1
1,326,742	+		IAI47_06480	0.29	-0.3
1,326,866	+		IAI47_06480	0.34	+0.4
1,326,867	-		IAI47_06480	0.34	-1.4
1,326,910	+		IAI47_06480	0.35	-0.1
1,326,911	-		IAI47_06480	0.36	-1.4
1,326,987	-		IAI47_06480	0.38	+1.3
1,326,987	-		IAI47_06480	0.38	-2.5
1,327,125	-		IAI47_06480	0.44	-1.1
1,327,125	-		IAI47_06480	0.44	-1.7
1,327,125	-		IAI47_06480	0.44	-3.1
1,327,131	+		IAI47_06480	0.44	-0.8
1,327,132	-		IAI47_06480	0.44	-1.3
1,327,132	-		IAI47_06480	0.44	-1.3
1,327,132	-		IAI47_06480	0.44	+0.7
1,327,132	-		IAI47_06480	0.44	+1.2
1,327,132	-		IAI47_06480	0.44	-3.3
1,327,174	-		IAI47_06480	0.45	-1.5
1,327,260	-		IAI47_06480	0.49	-1.7
1,327,362	-		IAI47_06480	0.52	-2.4
1,327,362	-		IAI47_06480	0.52	-0.8
1,327,374	-		IAI47_06480	0.53	-2.0
1,327,374	-		IAI47_06480	0.53	-0.1
1,327,374	-		IAI47_06480	0.53	-2.8
1,327,412	-		IAI47_06480	0.54	-1.3
1,327,463	+		IAI47_06480	0.56	-0.1
1,327,463	+		IAI47_06480	0.56	+0.0
1,327,463	+		IAI47_06480	0.56	-0.3
1,327,464	-		IAI47_06480	0.56	-0.6
1,327,464	-		IAI47_06480	0.56	-0.6
1,327,464	-		IAI47_06480	0.56	-2.0
1,327,464	-		IAI47_06480	0.56	-0.9
1,327,464	-		IAI47_06480	0.56	+1.6
1,327,464	-		IAI47_06480	0.56	-1.1
1,327,464	-		IAI47_06480	0.56	+1.2
1,327,464	-		IAI47_06480	0.56	-1.8
1,327,464	-		IAI47_06480	0.56	-1.6
1,327,464	-		IAI47_06480	0.56	+0.2
1,327,467	-		IAI47_06480	0.56	-1.4
1,327,467	-		IAI47_06480	0.56	-1.5
1,327,467	-		IAI47_06480	0.56	-0.1
1,327,467	-		IAI47_06480	0.56	-1.8
1,327,514	+		IAI47_06480	0.58	-0.7
1,327,515	-		IAI47_06480	0.58	+0.7
1,327,515	-		IAI47_06480	0.58	-0.6
1,327,515	-		IAI47_06480	0.58	+0.5
1,327,549	+		IAI47_06480	0.60	+0.7
1,327,550	-		IAI47_06480	0.60	-1.2
1,327,724	+		IAI47_06480	0.66	+0.2
1,327,725	-		IAI47_06480	0.66	+0.3
1,327,752	-		IAI47_06480	0.67	+0.9
1,327,752	-		IAI47_06480	0.67	+0.2
1,327,765	+		IAI47_06480	0.68	+0.9
1,327,785	-		IAI47_06480	0.68	+1.4
1,327,820	+		IAI47_06480	0.70	+2.0
1,327,821	-		IAI47_06480	0.70	-0.6
1,327,931	+		IAI47_06480	0.74	+0.1
1,327,931	+		IAI47_06480	0.74	+1.5
1,327,931	+		IAI47_06480	0.74	-1.0
1,327,985	+		IAI47_06480	0.76	+0.7
1,328,008	+		IAI47_06480	0.77	-1.1
1,328,009	-		IAI47_06480	0.77	+0.2
1,328,133	-		IAI47_06480	0.81	+3.7
1,328,148	-				+0.3
1,328,148	-		IAI47_06480	0.82	+0.6
1,328,206	+		IAI47_06480	0.84	+2.5
1,328,206	+		IAI47_06480	0.84	-0.1
1,328,251	+		IAI47_06480	0.86	-0.5
1,328,282	+		IAI47_06480	0.87	-0.3
1,328,283	-		IAI47_06480	0.87	-0.1
1,328,283	-		IAI47_06480	0.87	-1.4
1,328,322	-		IAI47_06480	0.89	+0.2
1,328,341	+		IAI47_06480	0.89	-1.5
1,328,342	-		IAI47_06480	0.89	+1.2
1,328,342	-		IAI47_06480	0.89	-0.7
1,328,344	+		IAI47_06480	0.89	-3.1
1,328,344	+		IAI47_06480	0.89	+2.3
1,328,345	-		IAI47_06480	0.89	+1.2
1,328,345	-		IAI47_06480	0.89	+0.7
1,328,422	+				+1.4
1,328,422	+				-0.8
1,328,422	+				+0.7
1,328,423	-				+2.3
1,328,423	-				+1.2
1,328,423	-				+0.7
1,328,423	-				-0.3
1,328,423	-				+1.2
1,328,423	-				+1.8
1,328,424	+				-0.4
1,328,424	+				+0.4
1,328,424	+				+1.0
1,328,424	+				-0.7
1,328,424	+				-1.9
1,328,425	-				+2.3
1,328,425	-				+2.0
1,328,456	+				-0.4
1,328,457	-				+0.3
1,328,494	+				-1.0
1,328,528	+				-1.6
1,328,528	+				+1.7
1,328,529	-				-0.3
1,328,529	-				-0.1
1,328,529	-				-0.6
1,328,529	-				+1.4
1,328,537	+				-0.8
1,328,537	+				+0.7
1,328,538	-				+1.0
1,328,538	-				+1.2
1,328,615	+				-1.0
1,328,616	-				-1.2
1,328,618	-				+1.0
1,328,624	+				-1.2
1,328,624	+				+1.4
1,328,624	+				-1.2
1,328,624	+				+0.7
1,328,624	+				+1.2
1,328,624	+				+0.3
1,328,624	+				+2.7
1,328,625	-				+1.8
1,328,625	-				-0.6
1,328,625	-				-1.4
1,328,625	-				-1.4
1,328,625	-				+0.8
1,328,625	-				+1.8
1,328,625	-				+0.0
1,328,625	-				+0.2
1,328,625	-				+0.3
1,328,625	-				-0.3
1,328,625	-				-1.6
1,328,625	-				+1.6
1,328,636	+				+1.9
1,328,637	-				-1.3
1,328,637	-				+0.7
1,328,646	-				-0.3
1,328,746	+				-0.1
1,328,747	-				-0.2
1,328,747	-				+0.7
1,328,767	-		IAI47_06485	0.11	-0.3
1,328,817	+		IAI47_06485	0.15	-0.4
1,328,817	+		IAI47_06485	0.15	-0.1
1,328,817	+		IAI47_06485	0.15	-2.2
1,328,818	-		IAI47_06485	0.15	+0.4
1,328,818	-		IAI47_06485	0.15	+0.5
1,328,818	-		IAI47_06485	0.15	-0.2
1,328,937	+		IAI47_06485	0.25	+0.4
1,328,937	+		IAI47_06485	0.25	+1.5
1,328,938	-		IAI47_06485	0.25	-1.1
1,328,938	-		IAI47_06485	0.25	+0.5
1,329,013	-		IAI47_06485	0.32	-0.4
1,329,050	+		IAI47_06485	0.35	-1.2
1,329,066	-		IAI47_06485	0.37	+1.9
1,329,066	-		IAI47_06485	0.37	-0.4
1,329,073	+		IAI47_06485	0.37	-1.2
1,329,074	-		IAI47_06485	0.37	-1.1
1,329,265	+		IAI47_06485	0.54	+0.7
1,329,265	+		IAI47_06485	0.54	-2.4
1,329,266	-		IAI47_06485	0.54	-0.8
1,329,274	+		IAI47_06485	0.55	-1.0
1,329,274	+		IAI47_06485	0.55	+1.8
1,329,275	-		IAI47_06485	0.55	-0.4
1,329,275	-		IAI47_06485	0.55	+0.5
1,329,286	-		IAI47_06485	0.56	+1.4
1,329,345	+		IAI47_06485	0.61	+0.1
1,329,345	+		IAI47_06485	0.61	+1.3
1,329,345	+		IAI47_06485	0.61	+0.9
1,329,346	-		IAI47_06485	0.61	+0.4
1,329,346	-		IAI47_06485	0.61	+0.6
1,329,346	-		IAI47_06485	0.61	-1.6
1,329,391	-		IAI47_06485	0.65	-1.8
1,329,391	-		IAI47_06485	0.65	-1.5
1,329,422	+		IAI47_06485	0.67	-1.4
1,329,423	-		IAI47_06485	0.67	-0.8
1,329,423	-		IAI47_06485	0.67	+0.6
1,329,469	+		IAI47_06485	0.71	+1.3
1,329,469	+		IAI47_06485	0.71	+1.0
1,329,470	-		IAI47_06485	0.72	+1.9
1,329,529	+		IAI47_06485	0.77	+0.5
1,329,532	+		IAI47_06485	0.77	-0.3
1,329,532	+		IAI47_06485	0.77	+1.1
1,329,533	-		IAI47_06485	0.77	+0.7
1,329,533	-		IAI47_06485	0.77	+0.3
1,329,533	-		IAI47_06485	0.77	-1.0
1,329,618	+		IAI47_06485	0.84	+0.3