Strain Fitness in Pantoea sp. MT58 around IAI47_05815

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_05805 and IAI47_05810 overlap by 8 nucleotidesIAI47_05810 and IAI47_05815 overlap by 4 nucleotidesIAI47_05815 and IAI47_05820 overlap by 1 nucleotidesIAI47_05820 and IAI47_05825 overlap by 20 nucleotidesIAI47_05825 and IAI47_05830 are separated by 150 nucleotidesIAI47_05830 and IAI47_05835 overlap by 4 nucleotides IAI47_05805: IAI47_05805 - DNA replication protein, at 1,203,031 to 1,203,735 _05805 IAI47_05810: IAI47_05810 - hypothetical protein, at 1,203,728 to 1,203,880 _05810 IAI47_05815: IAI47_05815 - hypothetical protein, at 1,203,877 to 1,204,101 _05815 IAI47_05820: IAI47_05820 - DUF3850 domain-containing protein, at 1,204,101 to 1,204,364 _05820 IAI47_05825: IAI47_05825 - hypothetical protein, at 1,204,345 to 1,204,710 _05825 IAI47_05830: IAI47_05830 - hypothetical protein, at 1,204,861 to 1,205,028 _05830 IAI47_05835: IAI47_05835 - hypothetical protein, at 1,205,025 to 1,205,225 _05835 Position (kb) 1203 1204 1205Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1202.891 kb on - strandat 1203.030 kb on + strandat 1203.031 kb on - strandat 1203.031 kb on - strandat 1203.146 kb on + strand, within IAI47_05805at 1203.176 kb on + strand, within IAI47_05805at 1203.176 kb on + strand, within IAI47_05805at 1203.176 kb on + strand, within IAI47_05805at 1203.176 kb on + strand, within IAI47_05805at 1203.276 kb on + strand, within IAI47_05805at 1203.276 kb on + strand, within IAI47_05805at 1203.276 kb on + strand, within IAI47_05805at 1203.276 kb on + strand, within IAI47_05805at 1203.276 kb on + strand, within IAI47_05805at 1203.276 kb on + strand, within IAI47_05805at 1203.277 kb on - strand, within IAI47_05805at 1203.277 kb on - strand, within IAI47_05805at 1203.277 kb on - strand, within IAI47_05805at 1203.277 kb on - strand, within IAI47_05805at 1203.277 kb on - strand, within IAI47_05805at 1203.412 kb on + strand, within IAI47_05805at 1203.451 kb on + strand, within IAI47_05805at 1203.451 kb on + strand, within IAI47_05805at 1203.451 kb on + strand, within IAI47_05805at 1203.451 kb on + strand, within IAI47_05805at 1203.451 kb on + strand, within IAI47_05805at 1203.451 kb on + strand, within IAI47_05805at 1203.451 kb on + strand, within IAI47_05805at 1203.451 kb on + strand, within IAI47_05805at 1203.451 kb on + strand, within IAI47_05805at 1203.451 kb on + strand, within IAI47_05805at 1203.451 kb on + strand, within IAI47_05805at 1203.451 kb on + strand, within IAI47_05805at 1203.452 kb on - strand, within IAI47_05805at 1203.452 kb on - strand, within IAI47_05805at 1203.452 kb on - strand, within IAI47_05805at 1203.452 kb on - strand, within IAI47_05805at 1203.452 kb on - strand, within IAI47_05805at 1203.452 kb on - strand, within IAI47_05805at 1203.452 kb on - strand, within IAI47_05805at 1203.452 kb on - strand, within IAI47_05805at 1203.452 kb on - strand, within IAI47_05805at 1203.747 kb on + strand, within IAI47_05810at 1203.748 kb on - strand, within IAI47_05810at 1203.765 kb on - strand, within IAI47_05810at 1203.832 kb on - strand, within IAI47_05810at 1203.847 kb on - strand, within IAI47_05810at 1203.887 kb on + strandat 1203.888 kb on - strandat 1203.888 kb on - strandat 1203.888 kb on - strandat 1203.888 kb on - strandat 1203.888 kb on - strandat 1203.888 kb on - strandat 1203.888 kb on - strandat 1203.899 kb on + strandat 1203.903 kb on + strand, within IAI47_05815at 1203.903 kb on + strand, within IAI47_05815at 1203.903 kb on + strand, within IAI47_05815at 1203.904 kb on - strand, within IAI47_05815at 1203.930 kb on + strand, within IAI47_05815at 1203.931 kb on - strand, within IAI47_05815at 1203.931 kb on - strand, within IAI47_05815at 1203.931 kb on - strand, within IAI47_05815at 1203.931 kb on - strand, within IAI47_05815at 1204.043 kb on + strand, within IAI47_05815at 1204.044 kb on - strand, within IAI47_05815at 1204.198 kb on + strand, within IAI47_05820at 1204.198 kb on + strand, within IAI47_05820at 1204.198 kb on + strand, within IAI47_05820at 1204.199 kb on - strand, within IAI47_05820at 1204.199 kb on - strand, within IAI47_05820at 1204.210 kb on + strand, within IAI47_05820at 1204.210 kb on + strand, within IAI47_05820at 1204.211 kb on - strand, within IAI47_05820at 1204.211 kb on - strand, within IAI47_05820at 1204.211 kb on - strand, within IAI47_05820at 1204.211 kb on - strand, within IAI47_05820at 1204.213 kb on + strand, within IAI47_05820at 1204.213 kb on + strand, within IAI47_05820at 1204.213 kb on + strand, within IAI47_05820at 1204.213 kb on + strand, within IAI47_05820at 1204.213 kb on + strand, within IAI47_05820at 1204.213 kb on + strand, within IAI47_05820at 1204.214 kb on - strand, within IAI47_05820at 1204.214 kb on - strand, within IAI47_05820at 1204.214 kb on - strand, within IAI47_05820at 1204.236 kb on + strand, within IAI47_05820at 1204.236 kb on + strand, within IAI47_05820at 1204.236 kb on + strand, within IAI47_05820at 1204.237 kb on - strand, within IAI47_05820at 1204.237 kb on - strand, within IAI47_05820at 1204.237 kb on - strand, within IAI47_05820at 1204.237 kb on - strand, within IAI47_05820at 1204.237 kb on - strand, within IAI47_05820at 1204.264 kb on + strand, within IAI47_05820at 1204.264 kb on + strand, within IAI47_05820at 1204.264 kb on + strand, within IAI47_05820at 1204.264 kb on + strand, within IAI47_05820at 1204.265 kb on - strand, within IAI47_05820at 1204.265 kb on - strand, within IAI47_05820at 1204.265 kb on - strand, within IAI47_05820at 1204.291 kb on - strand, within IAI47_05820at 1204.291 kb on - strand, within IAI47_05820at 1204.313 kb on + strand, within IAI47_05820at 1204.313 kb on + strand, within IAI47_05820at 1204.313 kb on + strand, within IAI47_05820at 1204.313 kb on + strand, within IAI47_05820at 1204.313 kb on + strand, within IAI47_05820at 1204.313 kb on + strand, within IAI47_05820at 1204.313 kb on + strand, within IAI47_05820at 1204.313 kb on + strand, within IAI47_05820at 1204.314 kb on - strand, within IAI47_05820at 1204.314 kb on - strand, within IAI47_05820at 1204.314 kb on - strand, within IAI47_05820at 1204.314 kb on - strand, within IAI47_05820at 1204.314 kb on - strand, within IAI47_05820at 1204.314 kb on - strand, within IAI47_05820at 1204.314 kb on - strand, within IAI47_05820at 1204.403 kb on + strand, within IAI47_05825at 1204.403 kb on + strand, within IAI47_05825at 1204.404 kb on - strand, within IAI47_05825at 1204.404 kb on - strand, within IAI47_05825at 1204.404 kb on - strand, within IAI47_05825at 1204.404 kb on - strand, within IAI47_05825at 1204.418 kb on + strand, within IAI47_05825at 1204.470 kb on - strand, within IAI47_05825at 1204.583 kb on + strand, within IAI47_05825at 1204.583 kb on + strand, within IAI47_05825at 1204.583 kb on + strand, within IAI47_05825at 1204.614 kb on + strand, within IAI47_05825at 1204.618 kb on + strand, within IAI47_05825at 1204.619 kb on - strand, within IAI47_05825at 1204.619 kb on - strand, within IAI47_05825at 1204.711 kb on + strandat 1204.711 kb on + strandat 1204.711 kb on + strandat 1204.711 kb on + strandat 1204.712 kb on - strandat 1204.712 kb on - strandat 1204.712 kb on - strandat 1204.712 kb on - strandat 1204.712 kb on - strandat 1204.712 kb on - strandat 1204.719 kb on + strandat 1204.737 kb on - strandat 1204.737 kb on - strandat 1204.797 kb on + strandat 1204.797 kb on + strandat 1204.798 kb on - strandat 1204.798 kb on - strandat 1204.798 kb on - strandat 1204.798 kb on - strandat 1204.798 kb on - strandat 1204.839 kb on + strandat 1204.839 kb on + strandat 1204.839 kb on + strandat 1204.840 kb on - strandat 1204.840 kb on - strandat 1204.840 kb on - strandat 1204.840 kb on - strandat 1204.843 kb on + strandat 1204.843 kb on + strandat 1204.843 kb on + strandat 1204.843 kb on + strandat 1204.843 kb on + strandat 1204.844 kb on - strandat 1204.844 kb on - strandat 1204.844 kb on - strandat 1204.844 kb on - strandat 1204.844 kb on - strandat 1204.948 kb on + strand, within IAI47_05830at 1204.948 kb on + strand, within IAI47_05830at 1204.963 kb on - strand, within IAI47_05830at 1204.963 kb on - strand, within IAI47_05830at 1205.035 kb on + strandat 1205.035 kb on + strandat 1205.035 kb on + strandat 1205.035 kb on + strandat 1205.035 kb on + strandat 1205.036 kb on - strandat 1205.036 kb on - strandat 1205.036 kb on - strandat 1205.058 kb on + strand, within IAI47_05835at 1205.058 kb on + strand, within IAI47_05835at 1205.058 kb on + strand, within IAI47_05835at 1205.058 kb on + strand, within IAI47_05835at 1205.058 kb on + strand, within IAI47_05835at 1205.058 kb on + strand, within IAI47_05835at 1205.058 kb on + strand, within IAI47_05835at 1205.058 kb on + strand, within IAI47_05835at 1205.058 kb on + strand, within IAI47_05835at 1205.058 kb on + strand, within IAI47_05835at 1205.059 kb on - strand, within IAI47_05835at 1205.059 kb on - strand, within IAI47_05835at 1205.059 kb on - strand, within IAI47_05835at 1205.059 kb on - strand, within IAI47_05835at 1205.059 kb on - strand, within IAI47_05835

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,202,891 - -0.6
1,203,030 + -1.2
1,203,031 - +0.7
1,203,031 - +1.6
1,203,146 + IAI47_05805 0.16 -1.7
1,203,176 + IAI47_05805 0.21 -1.4
1,203,176 + IAI47_05805 0.21 -0.6
1,203,176 + IAI47_05805 0.21 +0.3
1,203,176 + IAI47_05805 0.21 -1.5
1,203,276 + IAI47_05805 0.35 +0.4
1,203,276 + IAI47_05805 0.35 +0.0
1,203,276 + IAI47_05805 0.35 +0.8
1,203,276 + IAI47_05805 0.35 -0.7
1,203,276 + IAI47_05805 0.35 -1.4
1,203,276 + IAI47_05805 0.35 -1.4
1,203,277 - IAI47_05805 0.35 -0.2
1,203,277 - IAI47_05805 0.35 -0.0
1,203,277 - IAI47_05805 0.35 +2.5
1,203,277 - IAI47_05805 0.35 -0.5
1,203,277 - IAI47_05805 0.35 -1.4
1,203,412 + IAI47_05805 0.54 +0.1
1,203,451 + IAI47_05805 0.60 +0.3
1,203,451 + IAI47_05805 0.60 +1.5
1,203,451 + IAI47_05805 0.60 -0.6
1,203,451 + IAI47_05805 0.60 +1.2
1,203,451 + IAI47_05805 0.60 -0.6
1,203,451 + IAI47_05805 0.60 +0.8
1,203,451 + IAI47_05805 0.60 -0.3
1,203,451 + IAI47_05805 0.60 -3.0
1,203,451 + IAI47_05805 0.60 +2.1
1,203,451 + IAI47_05805 0.60 +0.8
1,203,451 + IAI47_05805 0.60 -1.0
1,203,451 + IAI47_05805 0.60 -1.4
1,203,452 - IAI47_05805 0.60 -0.9
1,203,452 - IAI47_05805 0.60 +0.3
1,203,452 - IAI47_05805 0.60 -0.8
1,203,452 - IAI47_05805 0.60 +1.3
1,203,452 - IAI47_05805 0.60 -1.6
1,203,452 - IAI47_05805 0.60 -1.8
1,203,452 - IAI47_05805 0.60 -0.3
1,203,452 - IAI47_05805 0.60 -0.3
1,203,452 - IAI47_05805 0.60 -1.3
1,203,747 + IAI47_05810 0.12 +0.3
1,203,748 - IAI47_05810 0.13 +1.7
1,203,765 - IAI47_05810 0.24 +0.3
1,203,832 - IAI47_05810 0.68 +1.6
1,203,847 - IAI47_05810 0.78 -0.9
1,203,887 + +0.8
1,203,888 - -0.5
1,203,888 - +1.1
1,203,888 - +1.3
1,203,888 - +2.9
1,203,888 - -1.2
1,203,888 - +1.1
1,203,888 - -1.1
1,203,899 + +0.5
1,203,903 + IAI47_05815 0.12 +1.2
1,203,903 + IAI47_05815 0.12 -2.0
1,203,903 + IAI47_05815 0.12 -2.3
1,203,904 - IAI47_05815 0.12 -1.3
1,203,930 + IAI47_05815 0.24 -2.5
1,203,931 - IAI47_05815 0.24 +1.6
1,203,931 - IAI47_05815 0.24 +0.7
1,203,931 - IAI47_05815 0.24 +0.7
1,203,931 - IAI47_05815 0.24 -1.1
1,204,043 + IAI47_05815 0.74 -2.8
1,204,044 - IAI47_05815 0.74 -0.3
1,204,198 + IAI47_05820 0.37 +2.4
1,204,198 + IAI47_05820 0.37 +1.3
1,204,198 + IAI47_05820 0.37 +1.0
1,204,199 - IAI47_05820 0.37 +0.1
1,204,199 - IAI47_05820 0.37 -2.1
1,204,210 + IAI47_05820 0.41 +0.3
1,204,210 + IAI47_05820 0.41 -0.2
1,204,211 - IAI47_05820 0.42 +2.8
1,204,211 - IAI47_05820 0.42 +0.0
1,204,211 - IAI47_05820 0.42 +1.4
1,204,211 - IAI47_05820 0.42 -2.0
1,204,213 + IAI47_05820 0.42 -2.4
1,204,213 + IAI47_05820 0.42 -1.4
1,204,213 + IAI47_05820 0.42 -0.1
1,204,213 + IAI47_05820 0.42 +3.6
1,204,213 + IAI47_05820 0.42 -1.1
1,204,213 + IAI47_05820 0.42 +0.1
1,204,214 - IAI47_05820 0.43 +3.5
1,204,214 - IAI47_05820 0.43 +0.2
1,204,214 - IAI47_05820 0.43 -2.0
1,204,236 + IAI47_05820 0.51 +0.7
1,204,236 + IAI47_05820 0.51 +0.8
1,204,236 + IAI47_05820 0.51 +0.5
1,204,237 - IAI47_05820 0.52 -0.9
1,204,237 - IAI47_05820 0.52 +1.1
1,204,237 - IAI47_05820 0.52 +3.0
1,204,237 - IAI47_05820 0.52 +1.0
1,204,237 - IAI47_05820 0.52 +1.4
1,204,264 + IAI47_05820 0.62 +3.4
1,204,264 + IAI47_05820 0.62 -1.2
1,204,264 + IAI47_05820 0.62 -2.0
1,204,264 + IAI47_05820 0.62 -0.8
1,204,265 - IAI47_05820 0.62 +0.0
1,204,265 - IAI47_05820 0.62 -0.6
1,204,265 - IAI47_05820 0.62 +0.3
1,204,291 - IAI47_05820 0.72 -0.6
1,204,291 - IAI47_05820 0.72 +2.3
1,204,313 + IAI47_05820 0.80 -1.4
1,204,313 + IAI47_05820 0.80 -0.3
1,204,313 + IAI47_05820 0.80 -0.7
1,204,313 + IAI47_05820 0.80 -1.4
1,204,313 + IAI47_05820 0.80 -0.0
1,204,313 + IAI47_05820 0.80 -1.1
1,204,313 + IAI47_05820 0.80 -1.2
1,204,313 + IAI47_05820 0.80 +0.0
1,204,314 - IAI47_05820 0.81 -0.8
1,204,314 - IAI47_05820 0.81 +1.8
1,204,314 - IAI47_05820 0.81 +4.5
1,204,314 - IAI47_05820 0.81 -0.4
1,204,314 - IAI47_05820 0.81 +0.4
1,204,314 - IAI47_05820 0.81 -0.6
1,204,314 - IAI47_05820 0.81 +0.4
1,204,403 + IAI47_05825 0.16 +0.3
1,204,403 + IAI47_05825 0.16 -1.0
1,204,404 - IAI47_05825 0.16 -0.5
1,204,404 - IAI47_05825 0.16 +0.6
1,204,404 - IAI47_05825 0.16 +0.5
1,204,404 - IAI47_05825 0.16 -0.8
1,204,418 + IAI47_05825 0.20 +1.3
1,204,470 - IAI47_05825 0.34 -0.6
1,204,583 + IAI47_05825 0.65 -3.5
1,204,583 + IAI47_05825 0.65 +0.6
1,204,583 + IAI47_05825 0.65 +0.1
1,204,614 + IAI47_05825 0.73 +0.4
1,204,618 + IAI47_05825 0.75 -1.4
1,204,619 - IAI47_05825 0.75 -1.1
1,204,619 - IAI47_05825 0.75 +0.7
1,204,711 + -0.1
1,204,711 + -0.6
1,204,711 + +2.5
1,204,711 + -2.0
1,204,712 - -1.9
1,204,712 - -1.1
1,204,712 - -0.2
1,204,712 - -0.3
1,204,712 - -0.9
1,204,712 - -1.5
1,204,719 + -0.6
1,204,737 - -0.2
1,204,737 - -1.1
1,204,797 + +0.2
1,204,797 + -0.9
1,204,798 - -2.0
1,204,798 - -0.1
1,204,798 - +0.1
1,204,798 - +0.5
1,204,798 - -0.1
1,204,839 + +0.5
1,204,839 + -1.4
1,204,839 + -0.4
1,204,840 - +1.7
1,204,840 - +1.4
1,204,840 - +0.3
1,204,840 - +0.1
1,204,843 + +0.9
1,204,843 + -0.6
1,204,843 + +0.2
1,204,843 + +2.7
1,204,843 + +0.7
1,204,844 - -0.9
1,204,844 - -0.5
1,204,844 - +0.2
1,204,844 - +2.5
1,204,844 - -1.2
1,204,948 + IAI47_05830 0.52 -0.2
1,204,948 + IAI47_05830 0.52 +0.2
1,204,963 - IAI47_05830 0.61 +2.7
1,204,963 - IAI47_05830 0.61 +0.9
1,205,035 + -2.1
1,205,035 + +0.1
1,205,035 + -0.1
1,205,035 + +0.9
1,205,035 + -0.4
1,205,036 - -0.1
1,205,036 - -0.8
1,205,036 - +1.9
1,205,058 + IAI47_05835 0.16 +0.2
1,205,058 + IAI47_05835 0.16 -0.9
1,205,058 + IAI47_05835 0.16 -3.1
1,205,058 + IAI47_05835 0.16 +3.3
1,205,058 + IAI47_05835 0.16 +1.0
1,205,058 + IAI47_05835 0.16 +1.4
1,205,058 + IAI47_05835 0.16 +0.7
1,205,058 + IAI47_05835 0.16 -0.7
1,205,058 + IAI47_05835 0.16 +0.7
1,205,058 + IAI47_05835 0.16 -1.7
1,205,059 - IAI47_05835 0.17 -2.3
1,205,059 - IAI47_05835 0.17 +0.8
1,205,059 - IAI47_05835 0.17 -1.2
1,205,059 - IAI47_05835 0.17 -2.4
1,205,059 - IAI47_05835 0.17 -2.1

Or see this region's nucleotide sequence