Strain Fitness in Pantoea sp. MT58 around IAI47_03770

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_03765 and IAI47_03770 are separated by 23 nucleotidesIAI47_03770 and IAI47_03775 are separated by 80 nucleotides IAI47_03765: IAI47_03765 - glycine cleavage system aminomethyltransferase GcvT, at 785,057 to 786,154 _03765 IAI47_03770: IAI47_03770 - glycine cleavage system protein GcvH, at 786,178 to 786,564 _03770 IAI47_03775: IAI47_03775 - aminomethyl-transferring glycine dehydrogenase, at 786,645 to 789,518 _03775 Position (kb) 786 787Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 785.258 kb on + strand, within IAI47_03765at 785.258 kb on + strand, within IAI47_03765at 785.259 kb on - strand, within IAI47_03765at 785.309 kb on + strand, within IAI47_03765at 785.309 kb on + strand, within IAI47_03765at 785.360 kb on + strand, within IAI47_03765at 785.360 kb on + strand, within IAI47_03765at 785.450 kb on + strand, within IAI47_03765at 785.450 kb on + strand, within IAI47_03765at 785.451 kb on - strand, within IAI47_03765at 785.458 kb on + strand, within IAI47_03765at 785.458 kb on + strand, within IAI47_03765at 785.458 kb on + strand, within IAI47_03765at 785.458 kb on + strand, within IAI47_03765at 785.459 kb on - strand, within IAI47_03765at 785.459 kb on - strand, within IAI47_03765at 785.605 kb on + strand, within IAI47_03765at 785.639 kb on + strand, within IAI47_03765at 785.703 kb on + strand, within IAI47_03765at 785.703 kb on + strand, within IAI47_03765at 785.704 kb on - strand, within IAI47_03765at 785.762 kb on + strand, within IAI47_03765at 786.195 kb on + strandat 786.195 kb on + strandat 786.195 kb on + strandat 786.195 kb on + strandat 786.196 kb on - strandat 786.205 kb on + strandat 786.206 kb on - strandat 786.206 kb on - strandat 786.250 kb on + strand, within IAI47_03770at 786.250 kb on + strand, within IAI47_03770at 786.250 kb on + strand, within IAI47_03770at 786.250 kb on + strand, within IAI47_03770at 786.250 kb on + strand, within IAI47_03770at 786.251 kb on - strand, within IAI47_03770at 786.261 kb on + strand, within IAI47_03770at 786.261 kb on + strand, within IAI47_03770at 786.262 kb on - strand, within IAI47_03770at 786.262 kb on - strand, within IAI47_03770at 786.264 kb on + strand, within IAI47_03770at 786.264 kb on + strand, within IAI47_03770at 786.265 kb on - strand, within IAI47_03770at 786.265 kb on - strand, within IAI47_03770at 786.284 kb on + strand, within IAI47_03770at 786.299 kb on + strand, within IAI47_03770at 786.299 kb on + strand, within IAI47_03770at 786.299 kb on + strand, within IAI47_03770at 786.299 kb on + strand, within IAI47_03770at 786.299 kb on + strand, within IAI47_03770at 786.299 kb on + strand, within IAI47_03770at 786.299 kb on + strand, within IAI47_03770at 786.299 kb on + strand, within IAI47_03770at 786.300 kb on - strand, within IAI47_03770at 786.300 kb on - strand, within IAI47_03770at 786.300 kb on - strand, within IAI47_03770at 786.300 kb on - strand, within IAI47_03770at 786.300 kb on - strand, within IAI47_03770at 786.300 kb on - strand, within IAI47_03770at 786.300 kb on - strand, within IAI47_03770at 786.384 kb on + strand, within IAI47_03770at 786.384 kb on + strand, within IAI47_03770at 786.384 kb on + strand, within IAI47_03770at 786.385 kb on - strand, within IAI47_03770at 786.385 kb on - strand, within IAI47_03770at 786.385 kb on - strand, within IAI47_03770at 786.385 kb on - strand, within IAI47_03770at 786.385 kb on - strand, within IAI47_03770at 786.385 kb on - strand, within IAI47_03770at 786.385 kb on - strand, within IAI47_03770at 786.385 kb on - strand, within IAI47_03770at 786.386 kb on - strand, within IAI47_03770at 786.388 kb on + strand, within IAI47_03770at 786.388 kb on + strand, within IAI47_03770at 786.388 kb on + strand, within IAI47_03770at 786.388 kb on + strand, within IAI47_03770at 786.388 kb on + strand, within IAI47_03770at 786.388 kb on + strand, within IAI47_03770at 786.388 kb on + strand, within IAI47_03770at 786.388 kb on + strand, within IAI47_03770at 786.388 kb on + strand, within IAI47_03770at 786.388 kb on + strand, within IAI47_03770at 786.388 kb on + strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.389 kb on - strand, within IAI47_03770at 786.399 kb on + strand, within IAI47_03770at 786.400 kb on - strand, within IAI47_03770at 786.466 kb on + strand, within IAI47_03770at 786.466 kb on + strand, within IAI47_03770at 786.466 kb on + strand, within IAI47_03770at 786.467 kb on - strand, within IAI47_03770at 786.482 kb on + strand, within IAI47_03770at 786.482 kb on + strand, within IAI47_03770at 786.482 kb on + strand, within IAI47_03770at 786.482 kb on + strand, within IAI47_03770at 786.482 kb on + strand, within IAI47_03770at 786.482 kb on + strand, within IAI47_03770at 786.486 kb on + strand, within IAI47_03770at 786.541 kb on + strandat 786.541 kb on + strandat 786.541 kb on + strandat 786.541 kb on + strandat 786.541 kb on + strandat 786.541 kb on + strandat 786.542 kb on - strandat 786.542 kb on - strandat 786.542 kb on - strandat 786.542 kb on - strandat 786.542 kb on - strandat 786.542 kb on - strandat 786.542 kb on - strandat 786.542 kb on - strandat 786.543 kb on + strandat 786.543 kb on + strandat 786.543 kb on + strandat 786.543 kb on + strandat 786.543 kb on + strandat 786.543 kb on + strandat 786.544 kb on - strandat 786.544 kb on - strandat 786.544 kb on - strandat 786.544 kb on - strandat 786.544 kb on - strandat 786.544 kb on - strandat 786.562 kb on + strandat 786.563 kb on - strandat 786.637 kb on + strandat 786.637 kb on + strandat 786.637 kb on + strandat 786.637 kb on + strandat 786.638 kb on - strandat 786.638 kb on - strandat 786.643 kb on + strandat 786.643 kb on + strandat 786.643 kb on + strandat 786.643 kb on + strandat 786.698 kb on + strandat 786.791 kb on + strandat 786.792 kb on - strandat 786.792 kb on - strandat 786.792 kb on - strandat 786.885 kb on + strandat 786.902 kb on + strandat 786.903 kb on - strandat 786.910 kb on - strandat 786.910 kb on - strandat 786.910 kb on - strandat 786.910 kb on - strandat 786.944 kb on + strand, within IAI47_03775at 786.944 kb on + strand, within IAI47_03775at 786.944 kb on + strand, within IAI47_03775at 786.944 kb on + strand, within IAI47_03775at 786.945 kb on - strand, within IAI47_03775at 786.945 kb on - strand, within IAI47_03775at 786.945 kb on - strand, within IAI47_03775at 786.945 kb on - strand, within IAI47_03775at 786.945 kb on - strand, within IAI47_03775at 786.945 kb on - strand, within IAI47_03775at 786.947 kb on + strand, within IAI47_03775at 786.947 kb on + strand, within IAI47_03775at 786.947 kb on + strand, within IAI47_03775at 786.947 kb on + strand, within IAI47_03775at 786.947 kb on + strand, within IAI47_03775at 786.947 kb on + strand, within IAI47_03775at 786.947 kb on + strand, within IAI47_03775at 786.947 kb on + strand, within IAI47_03775at 786.947 kb on + strand, within IAI47_03775at 786.948 kb on - strand, within IAI47_03775at 786.948 kb on - strand, within IAI47_03775at 786.948 kb on - strand, within IAI47_03775at 786.948 kb on - strand, within IAI47_03775at 786.948 kb on - strand, within IAI47_03775at 786.969 kb on + strand, within IAI47_03775at 786.970 kb on - strand, within IAI47_03775at 786.970 kb on - strand, within IAI47_03775at 786.978 kb on + strand, within IAI47_03775at 786.978 kb on + strand, within IAI47_03775at 786.978 kb on + strand, within IAI47_03775at 786.978 kb on + strand, within IAI47_03775at 786.978 kb on + strand, within IAI47_03775at 786.978 kb on + strand, within IAI47_03775at 786.979 kb on - strand, within IAI47_03775at 786.979 kb on - strand, within IAI47_03775at 786.979 kb on - strand, within IAI47_03775at 786.979 kb on - strand, within IAI47_03775at 786.979 kb on - strand, within IAI47_03775at 786.979 kb on - strand, within IAI47_03775at 786.979 kb on - strand, within IAI47_03775at 786.979 kb on - strand, within IAI47_03775at 786.979 kb on - strand, within IAI47_03775at 786.980 kb on + strand, within IAI47_03775at 786.981 kb on - strand, within IAI47_03775at 786.981 kb on - strand, within IAI47_03775at 787.056 kb on - strand, within IAI47_03775at 787.056 kb on - strand, within IAI47_03775at 787.067 kb on + strand, within IAI47_03775at 787.067 kb on + strand, within IAI47_03775at 787.139 kb on + strand, within IAI47_03775at 787.139 kb on + strand, within IAI47_03775at 787.140 kb on - strand, within IAI47_03775at 787.140 kb on - strand, within IAI47_03775at 787.140 kb on - strand, within IAI47_03775at 787.140 kb on - strand, within IAI47_03775at 787.178 kb on + strand, within IAI47_03775at 787.178 kb on + strand, within IAI47_03775at 787.178 kb on + strand, within IAI47_03775at 787.178 kb on + strand, within IAI47_03775at 787.179 kb on - strand, within IAI47_03775at 787.179 kb on - strand, within IAI47_03775at 787.179 kb on - strand, within IAI47_03775at 787.179 kb on - strand, within IAI47_03775at 787.329 kb on + strand, within IAI47_03775at 787.329 kb on + strand, within IAI47_03775at 787.391 kb on + strand, within IAI47_03775at 787.392 kb on - strand, within IAI47_03775at 787.392 kb on - strand, within IAI47_03775at 787.405 kb on + strand, within IAI47_03775at 787.405 kb on + strand, within IAI47_03775at 787.436 kb on + strand, within IAI47_03775at 787.436 kb on + strand, within IAI47_03775at 787.436 kb on + strand, within IAI47_03775at 787.436 kb on + strand, within IAI47_03775at 787.437 kb on - strand, within IAI47_03775at 787.437 kb on - strand, within IAI47_03775at 787.437 kb on - strand, within IAI47_03775at 787.523 kb on + strand, within IAI47_03775at 787.523 kb on + strand, within IAI47_03775at 787.523 kb on + strand, within IAI47_03775at 787.524 kb on - strand, within IAI47_03775at 787.524 kb on - strand, within IAI47_03775at 787.532 kb on + strand, within IAI47_03775at 787.532 kb on + strand, within IAI47_03775at 787.533 kb on - strand, within IAI47_03775at 787.533 kb on - strand, within IAI47_03775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
remove
785,258 + IAI47_03765 0.18 -0.8
785,258 + IAI47_03765 0.18 -1.8
785,259 - IAI47_03765 0.18 -0.5
785,309 + IAI47_03765 0.23 -2.0
785,309 + IAI47_03765 0.23 -0.5
785,360 + IAI47_03765 0.28 +0.6
785,360 + IAI47_03765 0.28 +1.1
785,450 + IAI47_03765 0.36 -1.3
785,450 + IAI47_03765 0.36 +1.0
785,451 - IAI47_03765 0.36 -0.9
785,458 + IAI47_03765 0.37 -1.4
785,458 + IAI47_03765 0.37 -1.0
785,458 + IAI47_03765 0.37 -2.0
785,458 + IAI47_03765 0.37 -2.1
785,459 - IAI47_03765 0.37 +2.1
785,459 - IAI47_03765 0.37 +0.7
785,605 + IAI47_03765 0.50 -0.3
785,639 + IAI47_03765 0.53 -0.7
785,703 + IAI47_03765 0.59 -1.3
785,703 + IAI47_03765 0.59 -1.7
785,704 - IAI47_03765 0.59 -0.6
785,762 + IAI47_03765 0.64 +2.3
786,195 + -0.7
786,195 + +0.9
786,195 + -1.0
786,195 + +0.3
786,196 - -0.7
786,205 + -2.3
786,206 - -1.5
786,206 - -1.0
786,250 + IAI47_03770 0.19 +0.2
786,250 + IAI47_03770 0.19 -1.2
786,250 + IAI47_03770 0.19 -0.9
786,250 + IAI47_03770 0.19 +0.1
786,250 + IAI47_03770 0.19 +1.6
786,251 - IAI47_03770 0.19 -1.9
786,261 + IAI47_03770 0.21 -3.2
786,261 + IAI47_03770 0.21 +0.1
786,262 - IAI47_03770 0.22 -2.3
786,262 - IAI47_03770 0.22 -1.5
786,264 + IAI47_03770 0.22 -0.8
786,264 + IAI47_03770 0.22 -2.0
786,265 - IAI47_03770 0.22 +0.5
786,265 - IAI47_03770 0.22 -0.4
786,284 + IAI47_03770 0.27 +1.8
786,299 + IAI47_03770 0.31 -0.5
786,299 + IAI47_03770 0.31 -1.7
786,299 + IAI47_03770 0.31 -1.6
786,299 + IAI47_03770 0.31 -1.9
786,299 + IAI47_03770 0.31 -0.8
786,299 + IAI47_03770 0.31 -2.5
786,299 + IAI47_03770 0.31 +0.5
786,299 + IAI47_03770 0.31 -1.8
786,300 - IAI47_03770 0.32 +1.0
786,300 - IAI47_03770 0.32 -1.7
786,300 - IAI47_03770 0.32 +2.4
786,300 - IAI47_03770 0.32 -0.8
786,300 - IAI47_03770 0.32 -1.8
786,300 - IAI47_03770 0.32 -2.1
786,300 - IAI47_03770 0.32 -2.7
786,384 + IAI47_03770 0.53 -2.2
786,384 + IAI47_03770 0.53 +0.2
786,384 + IAI47_03770 0.53 -1.4
786,385 - IAI47_03770 0.53 -0.6
786,385 - IAI47_03770 0.53 +2.3
786,385 - IAI47_03770 0.53 +0.3
786,385 - IAI47_03770 0.53 -0.1
786,385 - IAI47_03770 0.53 -0.1
786,385 - IAI47_03770 0.53 -1.3
786,385 - IAI47_03770 0.53 -0.0
786,385 - IAI47_03770 0.53 -1.8
786,386 - IAI47_03770 0.54 -0.9
786,388 + IAI47_03770 0.54 -1.4
786,388 + IAI47_03770 0.54 -1.8
786,388 + IAI47_03770 0.54 -0.7
786,388 + IAI47_03770 0.54 -1.0
786,388 + IAI47_03770 0.54 -1.0
786,388 + IAI47_03770 0.54 -0.8
786,388 + IAI47_03770 0.54 -3.1
786,388 + IAI47_03770 0.54 -1.7
786,388 + IAI47_03770 0.54 -0.8
786,388 + IAI47_03770 0.54 +0.7
786,388 + IAI47_03770 0.54 -2.3
786,389 - IAI47_03770 0.55 -0.7
786,389 - IAI47_03770 0.55 -1.8
786,389 - IAI47_03770 0.55 -0.9
786,389 - IAI47_03770 0.55 +0.7
786,389 - IAI47_03770 0.55 -0.1
786,389 - IAI47_03770 0.55 +2.9
786,389 - IAI47_03770 0.55 -1.9
786,389 - IAI47_03770 0.55 -0.3
786,389 - IAI47_03770 0.55 +0.5
786,389 - IAI47_03770 0.55 -1.1
786,389 - IAI47_03770 0.55 -1.7
786,389 - IAI47_03770 0.55 -0.6
786,389 - IAI47_03770 0.55 -0.2
786,389 - IAI47_03770 0.55 -1.0
786,389 - IAI47_03770 0.55 -1.8
786,389 - IAI47_03770 0.55 -3.0
786,389 - IAI47_03770 0.55 -0.6
786,399 + IAI47_03770 0.57 -1.9
786,400 - IAI47_03770 0.57 -2.0
786,466 + IAI47_03770 0.74 -0.5
786,466 + IAI47_03770 0.74 -2.6
786,466 + IAI47_03770 0.74 -2.0
786,467 - IAI47_03770 0.75 -0.6
786,482 + IAI47_03770 0.79 -1.9
786,482 + IAI47_03770 0.79 -1.4
786,482 + IAI47_03770 0.79 -1.5
786,482 + IAI47_03770 0.79 +1.2
786,482 + IAI47_03770 0.79 -2.5
786,482 + IAI47_03770 0.79 -0.7
786,486 + IAI47_03770 0.80 -1.3
786,541 + -1.1
786,541 + -0.3
786,541 + +0.8
786,541 + -1.8
786,541 + +0.2
786,541 + -2.2
786,542 - -0.3
786,542 - -1.0
786,542 - +2.1
786,542 - -2.9
786,542 - -0.1
786,542 - -1.6
786,542 - -3.5
786,542 - +0.5
786,543 + +3.0
786,543 + +0.5
786,543 + -0.8
786,543 + -2.0
786,543 + -0.4
786,543 + +0.8
786,544 - -0.8
786,544 - -2.2
786,544 - +1.6
786,544 - +2.1
786,544 - -1.9
786,544 - -1.5
786,562 + +1.1
786,563 - -0.5
786,637 + -0.1
786,637 + -1.9
786,637 + -1.7
786,637 + -2.0
786,638 - -2.6
786,638 - -0.2
786,643 + -1.5
786,643 + +1.8
786,643 + -0.9
786,643 + +0.4
786,698 + +0.6
786,791 + -0.8
786,792 - -1.8
786,792 - +1.6
786,792 - -1.5
786,885 + -0.9
786,902 + +1.3
786,903 - +0.3
786,910 - -0.5
786,910 - -1.9
786,910 - -2.2
786,910 - -1.8
786,944 + IAI47_03775 0.10 +0.7
786,944 + IAI47_03775 0.10 +0.9
786,944 + IAI47_03775 0.10 -0.8
786,944 + IAI47_03775 0.10 -1.6
786,945 - IAI47_03775 0.10 -0.5
786,945 - IAI47_03775 0.10 -0.5
786,945 - IAI47_03775 0.10 -1.1
786,945 - IAI47_03775 0.10 -1.2
786,945 - IAI47_03775 0.10 -1.1
786,945 - IAI47_03775 0.10 -0.5
786,947 + IAI47_03775 0.11 -0.7
786,947 + IAI47_03775 0.11 -0.5
786,947 + IAI47_03775 0.11 -0.8
786,947 + IAI47_03775 0.11 -2.3
786,947 + IAI47_03775 0.11 -2.3
786,947 + IAI47_03775 0.11 -1.3
786,947 + IAI47_03775 0.11 -0.6
786,947 + IAI47_03775 0.11 -2.1
786,947 + IAI47_03775 0.11 +0.3
786,948 - IAI47_03775 0.11 +1.6
786,948 - IAI47_03775 0.11 -2.2
786,948 - IAI47_03775 0.11 +0.6
786,948 - IAI47_03775 0.11 -0.8
786,948 - IAI47_03775 0.11 -1.3
786,969 + IAI47_03775 0.11 -1.6
786,970 - IAI47_03775 0.11 -1.1
786,970 - IAI47_03775 0.11 -0.2
786,978 + IAI47_03775 0.12 -1.3
786,978 + IAI47_03775 0.12 -2.7
786,978 + IAI47_03775 0.12 -0.5
786,978 + IAI47_03775 0.12 -1.7
786,978 + IAI47_03775 0.12 -0.9
786,978 + IAI47_03775 0.12 -0.6
786,979 - IAI47_03775 0.12 +1.4
786,979 - IAI47_03775 0.12 -1.2
786,979 - IAI47_03775 0.12 -0.3
786,979 - IAI47_03775 0.12 +0.1
786,979 - IAI47_03775 0.12 -0.9
786,979 - IAI47_03775 0.12 -2.9
786,979 - IAI47_03775 0.12 -0.0
786,979 - IAI47_03775 0.12 -0.0
786,979 - IAI47_03775 0.12 -0.4
786,980 + IAI47_03775 0.12 -1.9
786,981 - IAI47_03775 0.12 -0.7
786,981 - IAI47_03775 0.12 +0.2
787,056 - IAI47_03775 0.14 -1.9
787,056 - IAI47_03775 0.14 -0.7
787,067 + IAI47_03775 0.15 +0.9
787,067 + IAI47_03775 0.15 -0.9
787,139 + IAI47_03775 0.17 -1.4
787,139 + IAI47_03775 0.17 +0.4
787,140 - IAI47_03775 0.17 +0.6
787,140 - IAI47_03775 0.17 -2.1
787,140 - IAI47_03775 0.17 +0.2
787,140 - IAI47_03775 0.17 -2.0
787,178 + IAI47_03775 0.19 -1.3
787,178 + IAI47_03775 0.19 -0.3
787,178 + IAI47_03775 0.19 -1.3
787,178 + IAI47_03775 0.19 -1.8
787,179 - IAI47_03775 0.19 -0.9
787,179 - IAI47_03775 0.19 -0.8
787,179 - IAI47_03775 0.19 +0.5
787,179 - IAI47_03775 0.19 +0.3
787,329 + IAI47_03775 0.24 -0.8
787,329 + IAI47_03775 0.24 -0.0
787,391 + IAI47_03775 0.26 -0.1
787,392 - IAI47_03775 0.26 -0.3
787,392 - IAI47_03775 0.26 -0.7
787,405 + IAI47_03775 0.26 -2.7
787,405 + IAI47_03775 0.26 -3.2
787,436 + IAI47_03775 0.28 -1.5
787,436 + IAI47_03775 0.28 -0.2
787,436 + IAI47_03775 0.28 -3.0
787,436 + IAI47_03775 0.28 +1.0
787,437 - IAI47_03775 0.28 -1.7
787,437 - IAI47_03775 0.28 -0.6
787,437 - IAI47_03775 0.28 -0.7
787,523 + IAI47_03775 0.31 -0.7
787,523 + IAI47_03775 0.31 -2.2
787,523 + IAI47_03775 0.31 -1.8
787,524 - IAI47_03775 0.31 -1.2
787,524 - IAI47_03775 0.31 -1.4
787,532 + IAI47_03775 0.31 -3.2
787,532 + IAI47_03775 0.31 -1.1
787,533 - IAI47_03775 0.31 -2.0
787,533 - IAI47_03775 0.31 -1.6

Or see this region's nucleotide sequence